View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_low_17 (Length: 256)
Name: NF1796_low_17
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 35181050 - 35180901
Alignment:
| Q |
14 |
ttctcttaactttttgtacattctttagaagaataagtgaagttttgttgagttttactagctgataatcaaattatattattattctcctgtaaatttg |
113 |
Q |
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| T |
35181050 |
ttctcttaactttttgtacattctttagaagaataagtgaagttttgttgagttttactagctgataatcaaattatattattattctcctgtaaatttg |
35180951 |
T |
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| Q |
114 |
gtgataatttagtttatcatctttctttcttttaggccagaatttgcaga |
163 |
Q |
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| T |
35180950 |
gtgataatttagtttatcatctttctttcttttaggccagaatttgcaga |
35180901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 35180859 - 35180786
Alignment:
| Q |
166 |
ttggctcataaattctcaacctttacttaatggttgctaattttgttttctttgttggcttgattccttatact |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35180859 |
ttggctcataaattctcaacctttacttaatggttgctaattttgttttctttgttggcttgattccttatact |
35180786 |
T |
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