View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1796_low_19 (Length: 249)

Name: NF1796_low_19
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1796_low_19
NF1796_low_19
[»] chr6 (4 HSPs)
chr6 (15-249)||(24885194-24885428)
chr6 (22-243)||(2407524-2407756)
chr6 (75-243)||(2405634-2405802)
chr6 (166-240)||(15863463-15863536)
[»] chr4 (6 HSPs)
chr4 (46-243)||(51686414-51686611)
chr4 (17-243)||(41930588-41930810)
chr4 (68-243)||(50904627-50904800)
chr4 (69-181)||(30708258-30708370)
chr4 (69-186)||(12892256-12892373)
chr4 (113-186)||(40886235-40886308)
[»] chr3 (5 HSPs)
chr3 (44-243)||(11380584-11380783)
chr3 (27-243)||(18752050-18752265)
chr3 (22-243)||(42759949-42760176)
chr3 (22-97)||(49195059-49195134)
chr3 (167-228)||(12374023-12374084)
[»] chr8 (4 HSPs)
chr8 (69-243)||(5300896-5301070)
chr8 (22-181)||(45133070-45133240)
chr8 (167-243)||(5680148-5680223)
chr8 (167-243)||(21176015-21176090)
[»] chr7 (6 HSPs)
chr7 (69-243)||(11629910-11630084)
chr7 (58-181)||(37344890-37345013)
chr7 (69-243)||(41735034-41735204)
chr7 (69-186)||(17747275-17747392)
chr7 (69-186)||(16488740-16488857)
chr7 (22-51)||(37345041-37345070)
[»] chr1 (4 HSPs)
chr1 (69-243)||(23273002-23273176)
chr1 (22-243)||(11197165-11197393)
chr1 (15-181)||(38119680-38119851)
chr1 (44-186)||(16269334-16269476)
[»] chr5 (10 HSPs)
chr5 (69-243)||(42539092-42539267)
chr5 (71-243)||(15939947-15940115)
chr5 (69-243)||(36503252-36503422)
chr5 (69-243)||(38971347-38971517)
chr5 (22-51)||(15940228-15940257)
chr5 (44-77)||(42539270-42539303)
chr5 (194-243)||(42937370-42937419)
chr5 (15-51)||(38971561-38971597)
chr5 (15-51)||(42937291-42937327)
chr5 (44-76)||(42937335-42937367)
[»] chr2 (4 HSPs)
chr2 (69-243)||(7417091-7417261)
chr2 (71-243)||(25514641-25514808)
chr2 (69-186)||(15546988-15547105)
chr2 (44-77)||(7417264-7417297)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 24885194 - 24885428
Alignment:
Q  15 actgccaaggcgtcctgaagccataaaatggcagaacttgttacatgtgtttttacacattgtttcaatgccaaatcataaagtcaatcaaagaaaatta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24885194 actgccaaggcgtcctgaagccataaaatggcagaacttgttacatgtgtttttacacattgtttcaatgccaaatcataaagtcaatcaaagaaaatta 24885293  T
Q  115 ccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24885294 ccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgca 24885393  T
Q  215 acggaacgaacaaaatgtcatgaaaatattactac 249  Q
    |||||||||||||||||||||||||||||||||||    
T  24885394 acggaacgaacaaaatgtcatgaaaatattactac 24885428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 2407756 - 2407524
Alignment:
Q  22 aggcgtcctgaagccataaaatggcagaacttgttacatgtgtttttacacattgt-----------ttcaatgccaaatcataaagtcaatcaaagaaa 110  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||    
T  2407756 aggcttcctgaagccataaaatggcagaacctgttacatgtgtttttacacattgtaaacacattgtttcaatgccaaatcataaagtcaatcaaagaaa 2407657  T
Q  111 attaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaa 210  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  2407656 attaccaacataattaaaattgaaaatatgatacgaaaacgaacaattgttataaaaatatgtcatcgaaataccaacaaagtaacaaatgtcattaaaa 2407557  T
Q  211 tgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    | |||||||||||||||||||| ||||||||||    
T  2407556 tacaacggaacgaacaaaatgttatgaaaatat 2407524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 2405634 - 2405802
Alignment:
Q  75 tgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtc 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||    
T  2405634 tgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaaccaataattatcataaaaatatgtc 2405733  T
Q  175 atcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  2405734 atcgaaataccaacaaagtaacaaatgtcatgaaaatacaacggaacgaataaaatgtcatgaaaatat 2405802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 15863536 - 15863463
Alignment:
Q  166 aaatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaa 240  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||  || ||||||||| ||||||||||||||    
T  15863536 aaatatgtcatcaaaatacaaagaaactaacaaatgtcatgaaaatagaaaggaacgaac-aaatgtcatgaaaa 15863463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 51686611 - 51686414
Alignment:
Q  46 cagaacttgttacatgtgtttttacacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacg 145  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51686611 cagaacttgttacatgtgtttttacacattgtctcaatgccaaatcataaagtcaatcaaagaaaattaccaacattattgaaattgaaaatatgatacg 51686512  T
Q  146 gaaacgaacaattgtcataaaaatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51686511 gaaacgaacaattgtcataaaaatatgtcatcgaaataccaacaaagtaacaaatgtcatgaaaatacaacggaacgaacaaaatgtcatgaaaatat 51686414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 41930588 - 41930810
Alignment:
Q  17 tgccaaggcgtcctgaagccataaaatggcagaacttgttacatgtgtttttacacattgtttcaatgccaaatcataaagtcaatcaaagaaaattacc 116  Q
    |||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41930588 tgccgaggcatcctgaagccataaaatggcataacctgttacatgtgtttttacacattgtttcaatgccaaatcataaagccaatcaaagaaaattacc 41930687  T
Q  117 aacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaac 216  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||  |||||  ||  |||||||||||||||||| ||||    
T  41930688 aacataattgaaattgaaaatatgatacggaaatgaacaattgtcataaatatatgtcatcgaa--acaaagtaa-caacaaatgtcatgaaaatacaac 41930784  T
Q  217 ggaacgaacaaaatgtcatgaaaatat 243  Q
    | ||||  | |||| ||||||||||||    
T  41930785 gaaacg-gccaaatatcatgaaaatat 41930810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 68 - 243
Target Start/End: Complemental strand, 50904800 - 50904627
Alignment:
Q  68 tacacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaa 167  Q
    ||||||||||||||||| ||||||||||||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50904800 tacacattgtttcaatgtcaaatcataaagtcaataaaa--aatttaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaa 50904703  T
Q  168 atatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    ||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||    
T  50904702 atatgtcatcgaaataccaacaaagtaacaaatgtcatgaatatacaacagaacgaacaaaatgtcatgaaaatat 50904627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 30708370 - 30708258
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30708370 acacattgtttcaatgtcaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaata 30708271  T
Q  169 tatgtcatcgaaa 181  Q
    |||||||||||||    
T  30708270 tatgtcatcgaaa 30708258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 12892373 - 12892256
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    |||||||||||||||||||||||||||| | ||| ||   ||||||||||||||||| ||||||||||| |||||||  ||| | ||||||||||| |||    
T  12892373 acacattgtttcaatgccaaatcataaatttaataaacagaaattaccaacataatttaaattgaaaatttgatacgagaaccagcaattgtcatagaaa 12892274  T
Q  169 tatgtcatcgaaatacaa 186  Q
    ||||||||| ||||||||    
T  12892273 tatgtcatcaaaatacaa 12892256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 40886235 - 40886308
Alignment:
Q  113 taccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtcatcgaaatacaa 186  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||||| ||||||| |||||| ||||||||||||||    
T  40886235 taccaacatcatttaaattgaaaatatgatacgaaaaccaacaaatgtcatagaaatatttcatcgaaatacaa 40886308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 44 - 243
Target Start/End: Original strand, 11380584 - 11380783
Alignment:
Q  44 ggcagaacttgttacatgtgtttttacacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgata 143  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11380584 ggcagaacctgttacatgtgtttttacacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattaaaaatatgata 11380683  T
Q  144 cggaaacgaacaattgtcataaaaatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    ||||||||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  11380684 cggaaacgaacaattgtcatataaaaaggtcattgaaatacaaacaaagtaacaaatgtcattaaaatacaacagaacgaacaaaatgtcatgaaaatat 11380783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 18752265 - 18752050
Alignment:
Q  27 tcctgaagccataaaatggcagaacttgttacatgtgtttttacacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattg 126  Q
    |||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||| |  ||||||||||| ||||||||    
T  18752265 tcctgaagccaataaatggcagaacctgttacatgtgtttttacacattgtttcaatgccaaatgatgaagttaattagcgaaaattaccagcataattg 18752166  T
Q  127 aaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaaca 226  Q
    ||||||||||||||||||| |||||||||||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||     
T  18752165 aaattgaaaatatgatacgaaaacgaacaattgtcatacaataatgtcatcgaaatacaaacagagtaacaaatgtcatgaaaatgcaacagaacgaac- 18752067  T
Q  227 aaatgtcatgaaaatat 243  Q
    |||||||||||||||||    
T  18752066 aaatgtcatgaaaatat 18752050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 42760176 - 42759949
Alignment:
Q  22 aggcgtcctgaagccataaaatggcagaacttgttacatgtgtttttacac-----------attgtttcaatgccaaatcataaagtcaatcaaagaaa 110  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||           |||||||||||| |||||||||||||||||||||||||    
T  42760176 aggcgtcctgaagccataaaatggcagaacctgttacatgtgtttttacacgttgttaaaacattgtttcaatgtcaaatcataaagtcaatcaaagaaa 42760077  T
Q  111 attaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaa 210  Q
     |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||  |||||  ||  |||||||||||||||||    
T  42760076 -ttaccaacataattgaaactgaaaatatgatacggaaacggacaattgtcataaatatatgtcatcgaa--acaaagtaa-caacaaatgtcatgaaaa 42759981  T
Q  211 tgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    | ||||| |||| || |||||||||||||||||    
T  42759980 tacaacgaaacg-accaaatgtcatgaaaatat 42759949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 49195059 - 49195134
Alignment:
Q  22 aggcgtcctgaagccataaaatggcagaacttgttacatgtgtttttacacattgtttcaatgccaaatcataaag 97  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||    
T  49195059 aggcgtcctgaagccataaaatggcagaacctgttgcatgtgtttttacacattgtttcaatgctaaatcataaag 49195134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 12374084 - 12374023
Alignment:
Q  167 aatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaa 228  Q
    ||||||||||| || |||||| ||| ||| |||||||||||||||  |||| ||||||||||    
T  12374084 aatatgtcatcaaactacaaagaaactaagaaatgtcatgaaaatataacgaaacgaacaaa 12374023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 5300896 - 5301070
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5300896 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattactaacataattgaaattgaaaatatgatacagaaacgaacaattgtcataaaaa 5300995  T
Q  169 tatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5300996 tatgtcattgaaataccaacaaagtaacaaatgtcatgaaaatacaacggaacgaacaaaatgtcatgaaaatat 5301070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 45133240 - 45133070
Alignment:
Q  22 aggcgtcctgaagccataaaatggcagaacttgttacatgtgtttttacacattgt-----------ttcaatgccaaatcataaagtcaatcaaagaaa 110  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||           ||||||||||||||||||||| |||||||||||    
T  45133240 aggcatcctgaagccataaaatggcagaacctgttacatgtgtttttacacattgtaaacacattgtttcaatgccaaatcataaagttaatcaaagaaa 45133141  T
Q  111 attaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtcatcgaaa 181  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45133140 attaccaacaaaattgaaattgaaaatatgatacggaaacgaacaattttcataaaaatatgtcatcgaaa 45133070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 5680223 - 5680148
Alignment:
Q  167 aatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||  |||||||||||| |||||||||||||||||    
T  5680223 aatatgtcatcaaaatacaaacaaactaaaaaatgtcatgaaaataaaacggaacgaac-aaatgtcatgaaaatat 5680148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 21176015 - 21176090
Alignment:
Q  167 aatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||| ||| ||| |||||||||||||    
T  21176015 aatatgtcatcaaaatacaaacaaactaaaaaatgtcatgaaaatacaacggaactaac-aaaggtcatgaaaatat 21176090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 11629910 - 11630084
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11629910 acacattgtttcaatgtcaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacgaaaacgaacaattgtcataaaaa 11630009  T
Q  169 tatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||    
T  11630010 tatgtcatcgaaataccaacaaagtaacaaatgtcatgaaaatataacggaacgaacaaaatgtcataaaaatat 11630084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 58 - 181
Target Start/End: Complemental strand, 37345013 - 37344890
Alignment:
Q  58 catgtgtttttacacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37345013 catgtgtttttacacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacgaaaacgaacaat 37344914  T
Q  158 tgtcataaaaatatgtcatcgaaa 181  Q
    ||||||||| ||||||| ||||||    
T  37344913 tgtcataaatatatgtcgtcgaaa 37344890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 41735204 - 41735034
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| |    
T  41735204 acacattctttcaatgtcaaatcataaagtcaatcaaagaaaattactaacataattgaaattgaaaatatgatatggaaacaaacaattgtcataaata 41735105  T
Q  169 tatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    |||||| |||||  |||||  ||  |||||||||||||||||| ||||| ||||  | |||||||||||||||||    
T  41735104 tatgtcgtcgaa--acaaagtaa-caacaaatgtcatgaaaatacaacgaaacg-gctaaatgtcatgaaaatat 41735034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 17747275 - 17747392
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    |||||||||||||||||||||||||||  | ||| | | |||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||| |||    
T  17747275 acacattgtttcaatgccaaatcataatattaataagataaaattaccaacataatttaaattgaaaatatgatacgaaaaccaacaactgtcatagaaa 17747374  T
Q  169 tatgtcatcgaaatacaa 186  Q
    ||||||||| ||||||||    
T  17747375 tatgtcatcaaaatacaa 17747392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 16488857 - 16488740
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    |||||||||||||||||||||||||||| | ||| ||   ||||||||||||||||| ||||||||||| ||||||| |||  || |||||||||| |||    
T  16488857 acacattgtttcaatgccaaatcataaatttaataaacagaaattaccaacataatttaaattgaaaatttgatacgaaaaacaataattgtcatagaaa 16488758  T
Q  169 tatgtcatcgaaatacaa 186  Q
    | ||||||||||||||||    
T  16488757 tgtgtcatcgaaatacaa 16488740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 37345070 - 37345041
Alignment:
Q  22 aggcgtcctgaagccataaaatggcagaac 51  Q
    ||||||||||||||||||||||||||||||    
T  37345070 aggcgtcctgaagccataaaatggcagaac 37345041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 23273002 - 23273176
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23273002 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatatggaaacgaacaattgtcataaaaa 23273101  T
Q  169 tatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    |||||||||||||||| |||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||    
T  23273102 tatgtcatcgaaataccaacaaagtaacaaatgtcatgaaagtacaacagaacgaacaaaatgtcttgaaaatat 23273176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 11197393 - 11197165
Alignment:
Q  22 aggcgtcctgaagccataaaatggcagaacttgttacatgtgtttttacacattgt-----------ttcaatgccaaatcataaagtcaatcaaagaaa 110  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||    
T  11197393 aggcgtcctgaagccataaaatggcagaacctgttacatgtgtttttacacattgtaaacacattgtttcaatgccaaatcataaagtcaatcaaagaaa 11197294  T
Q  111 attaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||||  |||||  ||  |||||||||||||||||    
T  11197293 attaccaacataattgaaattgaaaatatgatacggaaatgaacaattgtcataaatatatatcgtcgaa--acaaagtaa-caacaaatgtcatgaaaa 11197197  T
Q  211 tgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    | ||||| || | || ||||||||| |||||||    
T  11197196 tacaacgaaatg-accaaatgtcataaaaatat 11197165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 38119680 - 38119851
Alignment:
Q  15 actgccaaggcgtcctgaagccataaaatggcagaacttgttacatgtgtttttacac-----------attgtttcaatgccaaatcataaagtcaatc 103  Q
    |||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||           ||||||||||||||||||||||||||||| |    
T  38119680 actgccgaggcgtcctgaagccataaaatggcagaacctgttatatgtgtttttacacattgtaaacacattgtttcaatgccaaatcataaagtcaacc 38119779  T
Q  104 aaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaatatgtcatcgaaa 181  Q
    ||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  38119780 aaagaaaattaccaacat------aattgaaaatatgatacggaaacgaacaattgtcataaatatatgtcgtcgaaa 38119851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 16269334 - 16269476
Alignment:
Q  44 ggcagaacttgttacatgtgtttttacacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgata 143  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||    
T  16269334 ggcagaacctgttaaatgtgtttttacacattttttcaatgccaaatcataaagttaataaacaaaaattaccaacataattgaaattgaaaatatgata 16269433  T
Q  144 cggaaacgaacaattgtcataaaaatatgtcatcgaaatacaa 186  Q
    |  |||||||||| | ||||| |||||||||||| ||||||||    
T  16269434 caaaaacgaacaaatatcatagaaatatgtcatcaaaatacaa 16269476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 42539267 - 42539092
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcata-aaa 167  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42539267 acacattatttcaatgccaactcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 42539168  T
Q  168 atatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    | |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  42539167 aaatgttatcgaaatacaaacaaagtaacaaatgtcatgaaaatacaacgaaacgaacaaaatgtcatgaaaatat 42539092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 15940115 - 15939947
Alignment:
Q  71 acattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaata 170  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15940115 acattatttcaatgccaaatcataaagttaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaaaaattgtcataaaaata 15940016  T
Q  171 tgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    ||||||||||  |||||  ||  |||||||||||||||||| ||||| ||||  | |||||||||||||||||    
T  15940015 tgtcatcgaa--acaaagtaa-caacaaatgtcatgaaaatacaacgaaacggtc-aaatgtcatgaaaatat 15939947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 36503252 - 36503422
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |    
T  36503252 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaatgaacaattgccataaata 36503351  T
Q  169 tatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    |||||| |||||  |||||  ||  |||||||||||||||||| ||||| ||||  | |||||||||||||||||    
T  36503352 tatgtcgtcgaa--acaaagtaa-caacaaatgtcatgaaaatacaacgaaacg-gccaaatgtcatgaaaatat 36503422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 38971517 - 38971347
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  38971517 acacattgttttaaagccaaatcataaagtcaatcaaagaaaattatcaacataattgaaattgaaaatatgatatggaaacgaacaattgtcataaata 38971418  T
Q  169 tatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    |||||| |||||  |||||  ||  |||||||||||| ||||| ||||| ||||  | |||||||||||||||||    
T  38971417 tatgtcgtcgaa--acaaagtaa-caacaaatgtcataaaaatacaacgaaacg-gccaaatgtcatgaaaatat 38971347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 15940257 - 15940228
Alignment:
Q  22 aggcgtcctgaagccataaaatggcagaac 51  Q
    ||||||||||||||||||||||||||||||    
T  15940257 aggcgtcctgaagccataaaatggcagaac 15940228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 42539303 - 42539270
Alignment:
Q  44 ggcagaacttgttacatgtgtttttacacattgt 77  Q
    |||||||| |||||||||||||||||||||||||    
T  42539303 ggcagaacctgttacatgtgtttttacacattgt 42539270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 42937370 - 42937419
Alignment:
Q  194 aacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    |||| |||||||||| || ||||  |||||||||||||||||||||||||    
T  42937370 aacacatgtcatgaatatacaacataacgaacaaaatgtcatgaaaatat 42937419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 38971597 - 38971561
Alignment:
Q  15 actgccaaggcgtcctgaagccataaaatggcagaac 51  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  38971597 actgccgaggagtcctgaagccataaaatggcagaac 38971561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 42937291 - 42937327
Alignment:
Q  15 actgccaaggcgtcctgaagccataaaatggcagaac 51  Q
    |||||| |||| |||||||||||||||||||||||||    
T  42937291 actgccgaggcttcctgaagccataaaatggcagaac 42937327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 42937335 - 42937367
Alignment:
Q  44 ggcagaacttgttacatgtgtttttacacattg 76  Q
    |||||||| ||||||||||||||||||||||||    
T  42937335 ggcagaacctgttacatgtgtttttacacattg 42937367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 7417261 - 7417091
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |    
T  7417261 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatatggaaacgaacaattatcataaata 7417162  T
Q  169 tatgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    ||||||||||||  |||||  ||  |||||||||||||||||| ||||| ||||  | |||| ||||||||||||    
T  7417161 tatgtcatcgaa--acaaagtaa-caacaaatgtcatgaaaatacaacgaaacg-gccaaatatcatgaaaatat 7417091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 25514641 - 25514808
Alignment:
Q  71 acattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaata 170  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25514641 acattgtttcaatgccaaatcataaagttaatcaaagaaa-ttaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaata 25514739  T
Q  171 tgtcatcgaaatacaaacaaagtaacaaatgtcatgaaaatgcaacggaacgaacaaaatgtcatgaaaatat 243  Q
    |||||| |||  |||||  ||  |||||||||||||||||| ||||| ||||  | |||||||||||||||||    
T  25514740 tgtcattgaa--acaaagtaa-caacaaatgtcatgaaaatacaacgaaacg-gccaaatgtcatgaaaatat 25514808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 15547105 - 15546988
Alignment:
Q  69 acacattgtttcaatgccaaatcataaagtcaatcaaagaaaattaccaacataattgaaattgaaaatatgatacggaaacgaacaattgtcataaaaa 168  Q
    |||||||||||||||||||||| ||||| | ||| || | ||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||| |||    
T  15547105 acacattgtttcaatgccaaataataaatttaataaacggaaattaccaacataatttaaattgaaaatttgatacgaaaaccaacaattgtcatagaaa 15547006  T
Q  169 tatgtcatcgaaatacaa 186  Q
    | ||||||||||||||||    
T  15547005 tgtgtcatcgaaatacaa 15546988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 7417297 - 7417264
Alignment:
Q  44 ggcagaacttgttacatgtgtttttacacattgt 77  Q
    |||||||| |||||||||||||||||||||||||    
T  7417297 ggcagaacctgttacatgtgtttttacacattgt 7417264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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