View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_low_2 (Length: 469)
Name: NF1796_low_2
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 25 - 460
Target Start/End: Original strand, 448683 - 449126
Alignment:
| Q |
25 |
ctctctcgagagaggttgtcgtgaaatgttgcattatccatacaaaaattcaatttt-aagaagnnnnnnnncaaactttaaatgcatttttgatatcca |
123 |
Q |
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| T |
448683 |
ctctctctcgagaggttgtcgtgaaa-gttgcattatccatacaaaaattcaatttttaagaagaaaaaaaacaaactttaaatgcatttttgatatcca |
448781 |
T |
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| Q |
124 |
aacatatcacaacccaagatattctagcatattagctttcaaagttcaggtaatattacactaattaatttataaatctaatttatatatacgtaaaact |
223 |
Q |
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| T |
448782 |
aacatatcacaacccaagatattctagcatattagctttcaaagttcaggtaatattacactaattaatttataaatctaatttatatatacgtaaaact |
448881 |
T |
|
| Q |
224 |
atttttcatatacattcaatcaaatcattttatgataccattttttagttatatatgtaactttgcatgaaatgtatattttctcagtttcgttactaga |
323 |
Q |
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| T |
448882 |
atttttgatatacattcaatcaaatcattttatgataccattttttagttatatatgtaagtttgcatgaaatgtatattttctcagtctcgttactaga |
448981 |
T |
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| Q |
324 |
gatttatgaaagagatttgatttgatagaatgcataattaggaactaacttttttatgaattattctggaatatatgtgatcaaagcaaggtagcta--- |
420 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
448982 |
gatttatgaaagagatttgaattgatagaatgcataattaggaactaacttttttatcaattattctggaatatatgtgatcaaagcaagctagctatat |
449081 |
T |
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| Q |
421 |
-----ttctatatataacaatatctcttatatcttccacaggttc |
460 |
Q |
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| T |
449082 |
tctatttctatatataacaatatctcttatatcttcctcaggttc |
449126 |
T |
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