View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1796_low_3 (Length: 462)

Name: NF1796_low_3
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1796_low_3
NF1796_low_3
[»] chr3 (5 HSPs)
chr3 (1-445)||(55211409-55211846)
chr3 (1-92)||(30912043-30912135)
chr3 (1-161)||(36326480-36326640)
chr3 (32-88)||(32414760-32414816)
chr3 (13-153)||(14029319-14029469)
[»] chr7 (8 HSPs)
chr7 (1-161)||(42513062-42513224)
chr7 (1-82)||(41712282-41712364)
chr7 (13-161)||(30456308-30456456)
chr7 (1-86)||(38572287-38572373)
chr7 (66-164)||(6102956-6103056)
chr7 (13-142)||(49017128-49017258)
chr7 (40-144)||(11206499-11206604)
chr7 (13-161)||(30452703-30452847)
[»] chr6 (6 HSPs)
chr6 (13-161)||(33242849-33242998)
chr6 (1-162)||(4834707-4834870)
chr6 (1-161)||(7415627-7415789)
chr6 (1-161)||(7426574-7426736)
chr6 (1-161)||(7422635-7422797)
chr6 (60-161)||(13886589-13886691)
[»] chr1 (4 HSPs)
chr1 (13-161)||(23405475-23405624)
chr1 (1-161)||(18583886-18584048)
chr1 (35-96)||(13087701-13087763)
chr1 (69-154)||(9893800-9893886)
[»] chr8 (2 HSPs)
chr8 (16-161)||(44761971-44762117)
chr8 (16-161)||(44765278-44765424)
[»] chr5 (5 HSPs)
chr5 (1-165)||(8123516-8123682)
chr5 (1-92)||(671450-671542)
chr5 (35-162)||(41709523-41709651)
chr5 (17-161)||(24108702-24108848)
chr5 (67-161)||(10321869-10321963)
[»] chr2 (3 HSPs)
chr2 (13-144)||(45327421-45327553)
chr2 (56-161)||(31211857-31211963)
chr2 (1-54)||(31211677-31211731)
[»] chr4 (4 HSPs)
chr4 (16-161)||(36050668-36050813)
chr4 (16-161)||(36053927-36054072)
chr4 (13-161)||(27387621-27387770)
chr4 (4-39)||(20441042-20441078)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 55211846 - 55211409
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctc 99  Q
    ||||||||||||| |||||||||||| |||||||||||||||||     ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  55211846 gttagggtgcacttatcttattatgaatatgcacaagtctatat-----ttgtatgccttattatgagaatcaatgaaaaatataatgaatttatttctc 55211752  T
Q  100 tcttatctctagtttttctctaatttatggaatgtgatccctacttaaattgggtagtatcaatatcagcaacacttcttgtgcatcttctgctactgtt 199  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  55211751 tcttatctctagtttttctctaatttatggaatgtgcttcctacttaaattggatagtatcaatatcagcaacacttgttgtgcatcttctgctactgtt 55211652  T
Q  200 tagtttggcagtgggagaacacttctcgcctaacaataaaacatattgccatgattttgttgaagcaatgaattgtagcttcggtgaaatgtgtggtaag 299  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55211651 tggtttggcagtgggagaacacttctcgcctaacaataaaacatattgccatgattttgttgaagcaatgaattgtagcttcggtgaaatgtgtggtaag 55211552  T
Q  300 gtaatgtggcagtccaaagttgttggcatggaaataaatagaatctttggatatcgggttgttgtagcattacttgcttaaaaaacatctcgtcagaatt 399  Q
    |||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55211551 gtaatgtggcagtccaca---gttggcatggaaataaatagaatctttggatatcgggttgttgtagcattacttgcttaaaaaacatctcgtcagaatt 55211455  T
Q  400 tcgtcattcaaatggagaagatgaaaatcgttttgtataaatttat 445  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  55211454 tcgtcattcaaatggagaagatgaatatcgttttgtataaatttat 55211409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 30912043 - 30912135
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaattt 92  Q
    ||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  30912043 gttagggtgcacttattttattgtgagtatgcacaagtctatataagtattgtatgccttattatgagaatcaatgaaaaatataatgaattt 30912135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 36326480 - 36326640
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctc 99  Q
    ||||||||||||| |  ||||||||||||||||  |||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||| | | ||    
T  36326480 gttagggtgcacttaggttattatgagtatgca--agtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattt-tctttc 36326576  T
Q  100 tcttatctctagttttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    |||| |||||||||| |  |||||| || |||| |||||||||||||  |||||||| ||||||    
T  36326577 tcttttctctagtttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 36326640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 32414760 - 32414816
Alignment:
Q  32 acaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatga 88  Q
    ||||||||||||||| |||||||| ||||||| |||||||||| |||||||||||||    
T  32414760 acaagtctatataaacattgtatgccttattacgagaatcaataaaaaatataatga 32414816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 14029319 - 14029469
Alignment:
Q  13 tatcttattatgagtatgcacaagtctatataaatattgtatgtctt----atta-----tgagaatcaatgaaaaatataatgaatttatttctctctt 103  Q
    |||||||| ||||||||||||||| ||||||||| ||| ||||||||    ||||     | |||||||||||||||||||||||||||  || ||| ||    
T  14029319 tatcttataatgagtatgcacaagcctatataaacattatatgtcttgtggattagaaatttagaatcaatgaaaaatataatgaatttcctt-tctttt 14029417  T
Q  104 atctctagttttt--ctctaatttatggaatgtgatccctacttaaattggg 153  Q
    ||||||||||| |  |||||| || |||| |||||||||||||  |||||||    
T  14029418 atctctagtttctcactctaaattctggagtgtgatccctactcgaattggg 14029469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 42513224 - 42513062
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctc 99  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||| | | ||    
T  42513224 gttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattt-tctttc 42513126  T
Q  100 tcttatctctagttttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    |||| |||||||||| |  ||||||||| |||| |||||||||||||  |||||||| ||||||    
T  42513125 tcttttctctagtttctccctctaatttctggagtgtgatccctactcgaattgggtcgtatca 42513062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 41712282 - 41712364
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaata 82  Q
    ||||||||||||| || |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  41712282 gttagggtgcacttattttattatgagtaggcacaagtctatataagtattgtatgtcttattatgagaatgaatgaaaaata 41712364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 30456308 - 30456456
Alignment:
Q  13 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 112  Q
    |||||||||||||||||||| ||||||||||||  ||| |||| ||||| || ||||  ||||||||||||||||||||| | | |||||| ||||||||    
T  30456308 tatcttattatgagtatgca-aagtctatataagcattatatgccttatgattagaacgaatgaaaaatataatgaattt-tctttctcttttctctagt 30456405  T
Q  113 tttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    || |  |||||| || |||| |||||||||||||  |||||||| ||||||    
T  30456406 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30456456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38572373 - 38572287
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataat 86  Q
    |||||||| |||| |||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||| ||| |||||||||||    
T  38572373 gttagggtacacttatcttattatgaatatgcccaagtctatataaacattgtatgccttattatgagaattaataaaaaatataat 38572287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 6102956 - 6103056
Alignment:
Q  66 agaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt-tctc-taatttatggaatgtgatccctacttaaattgggtagtatcaat 163  Q
    ||||||||||||||||||||||||||| |||  || |||||||||||||| |||| ||||||||||| |||||| ||||||  |||||||| ||||||||    
T  6102956 agaatcaatgaaaaatataatgaattttttttgcttttatctctagttttctctcttaatttatggagtgtgattcctactcgaattgggttgtatcaat 6103055  T
Q  164 a 164  Q
    |    
T  6103056 a 6103056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 49017128 - 49017258
Alignment:
Q  13 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 112  Q
    ||||||||||||| ||| ||||||| | |||||  |||||||| |||||||||||| | |||||||||||||||  |||| | | ||| |||||||||||    
T  49017128 tatcttattatgactatccacaagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataatatattt-tctttcttttatctctagt 49017226  T
Q  113 t--tttctctaatttatggaatgtgatcccta 142  Q
    |  | ||||||||||||||| |||||||||||    
T  49017227 ttctctctctaatttatggagtgtgatcccta 49017258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 11206499 - 11206604
Alignment:
Q  40 atataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagttttt--ctctaatttatggaatgtgat 137  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||| | | |||||| |||||||||| |  |||||| || |||| ||||||    
T  11206499 atataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattt-tctttctcttttctctagtttctccctctaaattctggagtgtgat 11206597  T
Q  138 ccctact 144  Q
    | |||||    
T  11206598 ctctact 11206604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 30452703 - 30452847
Alignment:
Q  13 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 112  Q
    |||||||||||||||||||| |||||||||||    ||||||| ||||| || ||||  ||||||||||||||||||||| | | |||||| ||||||||    
T  30452703 tatcttattatgagtatgca-aagtctatata----ttgtatgccttatgattagaacgaatgaaaaatataatgaattt-tctttctcttttctctagt 30452796  T
Q  113 tttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    || |  |||||| || |||| |||||||||||||  |||||||| ||||||    
T  30452797 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 30452847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 33242849 - 33242998
Alignment:
Q  13 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 112  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||||    
T  33242849 tatcttattatgagtatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaatttcttt-tcttttatttctagt 33242947  T
Q  113 t--tttctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    |  | |||||||||| |||| ||||||| |||||  |||||||| ||||||    
T  33242948 ttctctctctaatttctggagtgtgatctctactcgaattgggtcgtatca 33242998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 4834707 - 4834870
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctc 99  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||  |||||||| || ||||| ||||||||||||||||||||||||||| | | ||    
T  4834707 gttagggtgcacttatcttattatgagtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaatataatgaattt-tctttc 4834805  T
Q  100 tcttatctctagttttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatcaa 162  Q
    |||| |||||||||| |  |||||| || |||| ||||||||||||| ||||||||| |||||||    
T  4834806 tcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgtatcaa 4834870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 7415627 - 7415789
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctc 99  Q
    |||| |||||||| |||||||||||||||  || ||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| | | ||    
T  7415627 gttatggtgcacttatcttattatgagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattt-tctttc 7415725  T
Q  100 tcttatctctagtt--tttctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    |||| |||||||||  | |||||||||| |||| ||||||||||||| || |||| | ||||||    
T  7415726 tcttttctctagtttctctctctaatttctggagtgtgatccctactcaagttggatcgtatca 7415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 7426574 - 7426736
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctc 99  Q
    |||| |||||||| ||||||||| |||||  || ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | | ||    
T  7426574 gttatggtgcacttatcttattaagagtacacataagtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattt-tctttc 7426672  T
Q  100 tcttatctctagtttttc--tctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    |||| |||||| ||| ||  |||||||| |||| |||||||||||||  |||||||| ||||||    
T  7426673 tcttttctctaatttctctttctaatttctggagtgtgatccctactcgaattgggtcgtatca 7426736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 7422635 - 7422797
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctc 99  Q
    |||| |||||||| ||||||||| |||||  || ||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| | | ||    
T  7422635 gttatggtgcacttatcttattaagagtacacataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattt-tctttc 7422733  T
Q  100 tcttatctctagtt--tttctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    |||| |||||||||  | |||||||||| | || |||||||||||||  |||||||| ||||||    
T  7422734 tcttttctctagtttctctctctaatttcttgagtgtgatccctactcgaattgggtcgtatca 7422797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 161
Target Start/End: Original strand, 13886589 - 13886691
Alignment:
Q  60 attatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagttttt--ctctaatttatggaatgtgatccctacttaaattgggtagt 157  Q
    ||||| ||||||||||||||||||||||||||| | | |||||| |||||||||| |  |||||| || |||| ||||||||||||| ||||||||| ||    
T  13886589 attattagaatcaatgaaaaatataatgaattt-tctttctcttttctctagtttctccctctaaattctggagtgtgatccctactcaaattgggtcgt 13886687  T
Q  158 atca 161  Q
    ||||    
T  13886688 atca 13886691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 23405624 - 23405475
Alignment:
Q  13 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 112  Q
    ||||||| |||| |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| | | |||||| ||||||||    
T  23405624 tatcttactatgtgtatgcacaagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattt-tctttctcttttctctagt 23405526  T
Q  113 tttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    || |  |||||| || |||| |||||||||||||| |||||||| ||||||    
T  23405525 ttctccctctaaattctggagtgtgatccctacttgaattgggtcgtatca 23405475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 18584048 - 18583886
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctc 99  Q
    ||||||||||| | ||| |||||| |||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||| |||||||  || ||    
T  18584048 gttagggtgcagttatcgtattataagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatatactgaatttcctt-tc 18583950  T
Q  100 tcttatctctagtttt-tctc-taatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    | |||||||||||||| |||| |||||| |||| ||| ||| |||||  |||||||| ||||||    
T  18583949 ttttatctctagttttctctcttaatttctggagtgtaatctctactcgaattgggtcgtatca 18583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 13087701 - 13087763
Alignment:
Q  35 agtctatataaatattgtatgtcttattatgagaatcaatg-aaaaatataatgaatttattt 96  Q
    ||||||||||| ||||||||| |||||||||||||| |||| ||||||| |||||||||||||    
T  13087701 agtctatataagtattgtatgccttattatgagaatgaatgaaaaaatacaatgaatttattt 13087763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 9893800 - 9893886
Alignment:
Q  69 atcaatgaaaaatataatgaatttatttctctcttatctctagtt--tttctctaatttatggaatgtgatccctacttaaattgggt 154  Q
    |||||||||||||||||||||||| | | ||| | ||||||||||  |||| |||| ||||| | |||||| |||||| |||||||||    
T  9893800 atcaatgaaaaatataatgaattt-tctttctttcatctctagtttctttcactaaattatgcagtgtgatacctactcaaattgggt 9893886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 44761971 - 44762117
Alignment:
Q  16 cttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt 115  Q
    |||| |||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||| ||| ||||||     
T  44761971 cttactatgtgtatgcacaagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattt-tttttctcttttctatagtttc 44762069  T
Q  116 t--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    |  |||||| || |||| |||||||||||||  |||||||| ||||||    
T  44762070 tccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 44762117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 44765278 - 44765424
Alignment:
Q  16 cttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt 115  Q
    |||| |||| ||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||||||||||||| | | |||||| ||| ||||||     
T  44765278 cttactatgtgtatgcacaagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattt-tctttctcttttctatagtttc 44765376  T
Q  116 t--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    |  |||||| || |||| ||| |||||||||  |||||||| ||||||    
T  44765377 tccctctaaattctggagtgtaatccctactcgaattgggtcgtatca 44765424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 8123516 - 8123682
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctc 99  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||||| | | ||    
T  8123516 gttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattt-tctttc 8123614  T
Q  100 tcttatctctagttttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatcaatat 165  Q
    |||| ||| || ||| |  ||||||||| || | |||||||| ||||  |||||||| ||||||||||    
T  8123615 tcttttctttaatttctccctctaatttctgaagtgtgatccatactcgaattgggtcgtatcaatat 8123682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 671450 - 671542
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaattt 92  Q
    |||||||| |||| |||||||||||||||||||||||| |||||||  |||||||| |||||||||||||| |||||||||||||||||||||    
T  671450 gttagggtacacttatcttattatgagtatgcacaagtttatataatcattgtatgccttattatgagaattaatgaaaaatataatgaattt 671542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 41709523 - 41709651
Alignment:
Q  35 agtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagttttt--ctctaatttatggaat 132  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | | |||||| ||| |||||| |  |||||| || |||| |    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattt-tctttctcttttctatagtttctccctctaaattctggagt 41709621  T
Q  133 gtgatccctacttaaattgggtagtatcaa 162  Q
    |||||| |||||  |||||||| |||||||    
T  41709622 gtgatctctactcgaattgggtcgtatcaa 41709651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 24108702 - 24108848
Alignment:
Q  17 ttattatgagtatgca-caagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagttt- 114  Q
    |||||||||||||||| |||||||||||||  |||||||||||||| || |||| ||||||||||||||||||||||  || | | || ||||||||||     
T  24108702 ttattatgagtatgcaacaagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttttgt-ttgtctctagtttt 24108800  T
Q  115 -ttctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
     |||  |||||| |||| |||||||||||||  |||||||| ||||||    
T  24108801 cttccttaatttctggagtgtgatccctactcgaattgggtcgtatca 24108848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 10321963 - 10321869
Alignment:
Q  67 gaatcaatgaaaaatataatgaatttatttctctcttatctctagtttttctct--aatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    |||||||||||||| |||||||||||  || |||||||||||||| || |||||  || ||||||| ||||||||||||| ||||||||| ||||||    
T  10321963 gaatcaatgaaaaa-ataatgaatttcctt-tctcttatctctagcttatctctctaaattatggagtgtgatccctactcaaattgggtcgtatca 10321869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 45327553 - 45327421
Alignment:
Q  13 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 112  Q
    ||||||| |||| ||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||| ||||| ||| ||| ||||||||| |    
T  45327553 tatcttactatgtgtatgcacaagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaatttcttt-tcttttatctctaat 45327455  T
Q  113 ttt-tctc-taatttatggaatgtgatccctact 144  Q
    ||| |||| |||||| |||| |||||||||||||    
T  45327454 tttctctcttaatttctggagtgtgatccctact 45327421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 31211857 - 31211963
Alignment:
Q  56 tcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt-tctc-taatttatggaatgtgatccctacttaaattggg 153  Q
    ||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||| |||| |||||| |||| |||||||||||||  ||||||     
T  31211857 tcttattatgagaatcaatgaaaaatataatgaattt-tctttcttttatctctagttttctctcttaatttctggagtgtgatccctactcgaattgga 31211955  T
Q  154 tagtatca 161  Q
    | ||||||    
T  31211956 tcgtatca 31211963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31211677 - 31211731
Alignment:
Q  1 gttagggtgcact-atcttattatgagtatgcacaagtctatataaatattgtat 54  Q
    ||||| ||||||| |||||| |||||||||||| |||||||||||| ||||||||    
T  31211677 gttagagtgcacttatcttaatatgagtatgcataagtctatataagtattgtat 31211731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 36050668 - 36050813
Alignment:
Q  16 cttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt 115  Q
    |||| |||| ||||||||||||||||||||| |||||||| |||||||||||    ||||||||||||||||||||| ||| ||| ||||||||||||||    
T  36050668 cttactatgtgtatgcacaagtctatataaacattgtatgccttattatgag-ggaaatgaaaaatataatgaatttcttt-tcttttatctctagtttt 36050765  T
Q  116 -tc-tctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
     || | |||||| |||| |||||||||||||  |||||||| ||||||    
T  36050766 ctcttttaatttttggagtgtgatccctactcgaattgggtcgtatca 36050813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 36053927 - 36054072
Alignment:
Q  16 cttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagtttt 115  Q
    |||| |||| ||||||||||||||||||||| |||||||| |||||||||||    ||||||||||||||||||||| ||| ||| ||||||||||||||    
T  36053927 cttactatgtgtatgcacaagtctatataaacattgtatgccttattatgag-ggaaatgaaaaatataatgaatttcttt-tcttttatctctagtttt 36054024  T
Q  116 -tc-tctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
     || | |||||| |||| |||||||||||||  |||||||| ||||||    
T  36054025 ctcttttaatttttggagtgtgatccctactcgaattgggtcgtatca 36054072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 27387621 - 27387770
Alignment:
Q  13 tatcttattatgagtatgcacaagtctatataaatattgtatgtcttattatgagaatcaatgaaaaatataatgaatttatttctctcttatctctagt 112  Q
    |||||||||| ||| ||||||||||||||||||  |||||||| || ||||| || |  ||||||||||||||||||||| ||| ||  | |||||||||    
T  27387621 tatcttattacgaggatgcacaagtctatataagcattgtatgcctcattattagcaggaatgaaaaatataatgaatttcttt-tccttcatctctagt 27387719  T
Q  113 tttt--ctctaatttatggaatgtgatccctacttaaattgggtagtatca 161  Q
    || |  |||||| || |||| |||||||||||||  |||||||| ||||||    
T  27387720 ttctccctctaaattctggagtgtgatccctactcgaattgggtcgtatca 27387770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 20441078 - 20441042
Alignment:
Q  4 agggtgcact-atcttattatgagtatgcacaagtct 39  Q
    |||||||||| ||||||||||||||||||||||||||    
T  20441078 agggtgcacttatcttattatgagtatgcacaagtct 20441042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University