View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_low_4 (Length: 438)
Name: NF1796_low_4
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 389
Target Start/End: Original strand, 38774017 - 38774402
Alignment:
| Q |
15 |
aatattatcaaaattcaacgtctttatatactttttataattattttcaggggaaaattgaagtgactatagcaggaggaagagttgtttgggaaaataa |
114 |
Q |
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| T |
38774017 |
aatattatcaaaattcaacgtctttatatactttttataattattttcaggggaaaattgaagtgactatagcaggaggaagagttgtttgggaaaataa |
38774116 |
T |
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| Q |
115 |
tgaactgaaagttgttcctggtaatgggagatacatacagatgcctccttttagttatctgtttgatggattggacaaaaaggatgctgtttatctaaat |
214 |
Q |
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| T |
38774117 |
tgaactgaaagttgttcctggtaatgggagatacatacagatgcctccttttagttatctgtttgatggattggacaaaaaggatgctgtttatctaaat |
38774216 |
T |
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| Q |
215 |
tcccttaaagccccagtaaaaagagccaaatctaccacttnnnnnnnnnttatggtattgttttttact-----------atagtttttggcattcaaac |
303 |
Q |
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| T |
38774217 |
tcccttaaagccccagtaaaaagagccaaatctaccacttaaaaaaaaattatggtattgttttttactatattgttaacatagtttttggcattcaaac |
38774316 |
T |
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| Q |
304 |
aaagaaaaaacatatgtctatgtactagaaaacttcgattgtacatagaataattttgttgtgttactttgcttagatttgtgttg |
389 |
Q |
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| T |
38774317 |
aaagaaaaaacatgtatctatgtactagaaaacttcgattgtacatagaataattatgttgtgttactttgcttagatttgtgttg |
38774402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 38800219 - 38800391
Alignment:
| Q |
59 |
tttcaggggaaaattgaagtgactatagcaggaggaagagttgtttgggaaaataatgaactgaaagttgttcctggtaatgggagatacatacagatgc |
158 |
Q |
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| T |
38800219 |
tttcaggggaaaattgaagtgactgtagcaggaggaagagttgtttgggaaaataatgaattgaaggttgttcctggttctgggagatacattcaaatgg |
38800318 |
T |
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| Q |
159 |
ctccttttagttatctgtttgatggattggacaaaaaggatgctgtttatctaaattcccttaaagccccagt |
231 |
Q |
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| T |
38800319 |
caccttttagttatctgtttgatggaatcgacaagaaggatgccgcttacctaaattcccttcaagccccagt |
38800391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 53 - 254
Target Start/End: Original strand, 38791686 - 38791886
Alignment:
| Q |
53 |
aattattttcaggggaaaattgaagtgactatagcaggaggaagagttgtttgggaaaataatgaactgaaagttgttcctggtaatgggagatacatac |
152 |
Q |
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| T |
38791686 |
aattattttcagggagaaattgaagtgtctttagcaggaggaagagttttttggtaaaataatgaactgaaagttgttcctgttactgggagatccata- |
38791784 |
T |
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| Q |
153 |
agatgcctccttttagttatctgtttgatggattggacaaaaaggatgctgtttatctaaattcccttaaagccccagtaaaaagagccaaatctaccac |
252 |
Q |
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| T |
38791785 |
aaatgtttccttttcgttatctgtctgatgcattgaaccaaaaggatcccatttatctaaattcccttcaagcctcagtaaaaagtgccaaatcaaccac |
38791884 |
T |
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| Q |
253 |
tt |
254 |
Q |
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|| |
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| T |
38791885 |
tt |
38791886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 426
Target Start/End: Original strand, 38774419 - 38774454
Alignment:
| Q |
391 |
aagggaacataacatgaataagatactgtataagta |
426 |
Q |
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| T |
38774419 |
aagggaacataacatgaataagatactgtataagta |
38774454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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