View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_low_5 (Length: 424)
Name: NF1796_low_5
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 33015794 - 33016186
Alignment:
| Q |
13 |
tcatcatacattggccatgccagcttgtttctcaaaccgatccaccaatttccaccaacaataacacaaaggttatccccagccctgtcaccgtgaccnn |
112 |
Q |
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| T |
33015794 |
tcatcatacattggccatgccagcttgtttctcaaaccgatccaccaatttccaccaacaataacacaaaggttatccctagccctgtcaccgtgaccaa |
33015893 |
T |
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| Q |
113 |
nnnnnnnnnnnnnnncgtttgcacaagctcttagcaatgtttgtgatgttccaatcagttagttacctcaaccatgcaaaaaaggtgatgaatcgcaaca |
212 |
Q |
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| T |
33015894 |
aaaacaacaaaaaaacgtttgcacaagctcttagcaatgtttgtgatgttccaatcagttagttacctcatccatgcaaaaaaggtgatgaatcgcaaca |
33015993 |
T |
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| Q |
213 |
gatattcctgaagaggagtatattactggcttggatgagtgtaaacacaacttgcatgtaatgatgatatggccaaaagggtcatcaccttttactatgg |
312 |
Q |
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| T |
33015994 |
gaaattcctgaagaggagtatattactggcttggatgagtgtaaacacaacttgcatgtaataatgatatggccaaaagggtcatcaccttttactatgg |
33016093 |
T |
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| Q |
313 |
ataacttgcgctccaagctgatggttttagggaaatctcttggtaaacggggaatcacttctattggcaaggtattctatgaattcaccttct |
405 |
Q |
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| T |
33016094 |
ataacttgcgctccaagctgatggttatagggaaatctcttggtaaacggggaatcatttctattggcaaggtattctatgaattcaccttct |
33016186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 346
Target Start/End: Original strand, 16179665 - 16179853
Alignment:
| Q |
158 |
atgttccaatcagttagttacctcaaccatgcaaaaaaggtgatg-aatcgcaacagatattcctgaagaggagtatattactggcttggatgagtgtaa |
256 |
Q |
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| T |
16179665 |
atgttccaatcagtcaattacctcagccatgcaagaaaggagatggaattgcaattgaaattcctgaagatgagtatattgctggattagaagagtgtaa |
16179764 |
T |
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| Q |
257 |
acacaacttgcatgtaatgatgatatggccaaaagggtcatcaccttttactatggataacttgcgctccaagctgatggttttagggaa |
346 |
Q |
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| T |
16179765 |
ccacaatttgcatgggagaataatatggcctaaagggtca-cacctgttaccatagatagcatgcgcgccaagttgaaggtcttatggaa |
16179853 |
T |
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