View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1796_low_8 (Length: 391)
Name: NF1796_low_8
Description: NF1796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1796_low_8 |
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| [»] scaffold0123 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Complemental strand, 4500026 - 4499651
Alignment:
| Q |
15 |
caaaccacccgttgacgacgacaactcaaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaatataaactctactgtacactcgt |
114 |
Q |
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| T |
4500026 |
caaaccacccgttgacgacaacaactcaaacatccatgtcaaccgatcgtatatgcacgctcatgcattctttccaatataaactgtactgtacgccggt |
4499927 |
T |
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| Q |
115 |
ttaggatccttgcttgtaatataaactctttcgttaattaaaccgtgatcgaataaaccaagctcgtgatgctatttgttggccgatatgatgaatacaa |
214 |
Q |
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| T |
4499926 |
ttaggatccttgcttgtaatataaactctttcgttaattaaaccgtgaccgaataaaccaagctcgtgatgctatttgttggccgatatgatgaatacaa |
4499827 |
T |
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| Q |
215 |
ccataatagacgcgtaacatcacacaatcacagaaaaaccagacccctttaattttataataaacattaacctcccctaaggtcttttaaaatatatatt |
314 |
Q |
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| T |
4499826 |
ccataatagacgcgtaacatcacacaatcacagaaaaaccagacccctttaattttataataaacattaacctcccctaaggtcttttaaaatatatatt |
4499727 |
T |
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| Q |
315 |
atatcccttttcatttaacaccgttagtactctgttggaaattaaaaatgtagtgtcttcttgatgatgtccatct |
390 |
Q |
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| T |
4499726 |
atatcccttttcatttaacaccgttagtactctgttagaaattaaaaatgtagtgtcttcttgatgatgtcaatct |
4499651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 41805206 - 41805249
Alignment:
| Q |
267 |
ttttataataaacattaacctcccctaaggtcttttaaaatata |
310 |
Q |
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| T |
41805206 |
ttttataatagacataaacctcccctaagatcttttaaaatata |
41805249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 13354 - 13292
Alignment:
| Q |
31 |
gacgacaactcaaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaata |
93 |
Q |
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| T |
13354 |
gacgacatctgaaacatacgtgtcaaccaattgaatatgcacgctcatgcattctttccaata |
13292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 24374015 - 24374091
Alignment:
| Q |
17 |
aaccacccgttgacgacgacaactcaaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaatat |
94 |
Q |
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| T |
24374015 |
aaccgcccgttgaccacgacatcccaa-cattcatgtcaaccgattggatatgaacgctcatgcattcttaccaatat |
24374091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 39673766 - 39673807
Alignment:
| Q |
267 |
ttttataataaacattaacctcccctaaggtcttttaaaata |
308 |
Q |
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| T |
39673766 |
ttttataatagatattaacctcccctaagttcttttaaaata |
39673807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 39673843 - 39673884
Alignment:
| Q |
264 |
taattttataataaacattaacctcccctaaggtcttttaaa |
305 |
Q |
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| T |
39673843 |
taattttataatagatattaacctcccctaagttcttttaaa |
39673884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 13606444 - 13606496
Alignment:
| Q |
41 |
caaacatccatgtcaactgatcgtatatgcacgctcatgcattctttccaata |
93 |
Q |
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| T |
13606444 |
caaacatccatgtccaccgattggatatgaacgctcatgcactctttccaata |
13606496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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