View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17970_high_3 (Length: 276)
Name: NF17970_high_3
Description: NF17970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17970_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 36323535 - 36323795
Alignment:
| Q |
1 |
ttggtctctacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaagcaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36323535 |
ttggtctctacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaaacaag |
36323634 |
T |
|
| Q |
101 |
acaaatgtccagcttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatacaagacaacaaaggatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36323635 |
acaaatgtccagcttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatacaagacaacaaaggatgg |
36323734 |
T |
|
| Q |
201 |
gatttgggtttgggaatctccaccattgctattgtctttgctatgatcacctttgcctttg |
261 |
Q |
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| T |
36323735 |
gatttgggtttgggaatctccaccattgctattgtctttgctatgatcacctttgcctttg |
36323795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 257
Target Start/End: Original strand, 36330384 - 36330637
Alignment:
| Q |
4 |
gtctctacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaagcaagaca |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36330384 |
gtctatacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaaacaagaca |
36330483 |
T |
|
| Q |
104 |
aatgtccagcttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatacaagacaacaaaggatgggat |
203 |
Q |
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| T |
36330484 |
aatgtctagcttctttaatgctctcttgcttgctgtttgcattggtggttctgtcagcttaacatttaatgtatggatacaaaacagcaaaggatgggat |
36330583 |
T |
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| Q |
204 |
ttgggtttgggaatctccaccattgctattgtctttgctatgatcacctttgcc |
257 |
Q |
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| T |
36330584 |
tggggatttggaatatccaccattgctattgtctttgctatgatcatctttgcc |
36330637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 37919886 - 37920086
Alignment:
| Q |
4 |
gtctctacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaagcaagaca |
103 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
37919886 |
gtctatacgtgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatctcaaagaaacaagaca |
37919985 |
T |
|
| Q |
104 |
aatgtccagcttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatacaagacaacaaaggatgggat |
203 |
Q |
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|||||| ||||| ||||||| |||||| |||| ||||| ||| ||||||||||| |||||| |||||||||| ||||||| ||| |||||| |||||| |
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| T |
37919986 |
aatgtctagcttatttaatgttctcttacttgttgtttgcattgatggttctgtcaacttaacatttaatgtatagatacaaaacagcaaagggtgggat |
37920085 |
T |
|
| Q |
204 |
t |
204 |
Q |
| |
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| |
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| T |
37920086 |
t |
37920086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5458801 - 5459004
Alignment:
| Q |
1 |
ttggtctctacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaagatcccaaagaagcaag |
100 |
Q |
| |
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||||||| |||||||||||||| || |||||||| |||||| | ||||| |||||||||| ||||| ||||||||| |||||||||||||| || |
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| T |
5458801 |
ttggtctatacttgttggccttcggcagtgcaggaaccaaagctgcattgccatcacatggtgcagaccaatttgatgaatcagatcccaaagaagaaaa |
5458900 |
T |
|
| Q |
101 |
acaaatgtccagcttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatacaagacaacaaaggatgg |
200 |
Q |
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||||||||| |||||||||| |||||||||||| ||||| | |||||| | |||||||||||||| | ||||||||||||| ||||||||||||| |
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| T |
5458901 |
gaaaatgtccacattctttaatgttctcttgcttgctgtttgcatgggtggtgcagtcagcttaactttcattgtatggatacaaatcaacaaaggatgg |
5459000 |
T |
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| Q |
201 |
gatt |
204 |
Q |
| |
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|||| |
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| T |
5459001 |
gatt |
5459004 |
T |
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