View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17970_low_2 (Length: 612)
Name: NF17970_low_2
Description: NF17970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17970_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 15 - 593
Target Start/End: Complemental strand, 36323558 - 36322980
Alignment:
| Q |
15 |
caaaggccaacaagtagagaccaatcaagagaaaagcttcatggttgccactaattttttcacacactgcatttttgtcatagaggttgcatatggctgg |
114 |
Q |
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| T |
36323558 |
caaaggccaacaagtagagaccaatcaagagaaaagcttcatggttgccactaattttttcacacactgcatttttgtcatagaggttgcatatggctgg |
36323459 |
T |
|
| Q |
115 |
ttttaggttagggtaatgtgcttgtaccgtgagtaacgccagtccctgcaacataattcacaatatatagacttcattacattacttgtaattgataagt |
214 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36323458 |
ttttaggttagggtaatgtgcttgtactgtgagtaacgccagtccctgcaacataattcacaatatatagacttcattacattacttgtaattgataagt |
36323359 |
T |
|
| Q |
215 |
tttaaataggctaaagaatttaaaatattttgcggtcaggtatttgaggaaaatttttattcatatgcatttacagaatcattagttaactacaatggct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36323358 |
tttaaataggctaaagaatttaaaatattttgcggtcaggtatttgaggaaaatttttattcatatgcatttacagaatcattagttaactacaatggct |
36323259 |
T |
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| Q |
315 |
cgctcgatctttagaaaaaatttacacatattcgtataacaaattatgaaaatgatatgcatattttaaccgaggtttgccattaatctttagctacaca |
414 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
36323258 |
cgctcgatctttagaaaaaatttacacatattcgtattacaaattatgaaaatgatatgcatgtttaaaccgaggtttgccattaatctttagctacaca |
36323159 |
T |
|
| Q |
415 |
tacacacatgagttttgttttttgttaacaatgtttgtccatgttgcttctcccaagggtccnnnnnnnggggaggtcaaccttctcctaagcttaaaat |
514 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36323158 |
tacacacatgaattttgttttttgttaacaatgtttgtccatgttgcttctcccaagggtcctttttttggggaggtcaaccttctcctaagcttaaaat |
36323059 |
T |
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| Q |
515 |
gagctcaaccatcgatcctaatgggagctccgccgccgggcgaccatcatcaaccaccaccaatataatggtgtcaaac |
593 |
Q |
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| T |
36323058 |
gagctcaaccatcgatcctaatgggagctccgctgccgggcgaccatcatcaaccaccaccaatataatggtgtcaaac |
36322980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 36330404 - 36330240
Alignment:
| Q |
15 |
caaaggccaacaagtagagaccaatcaagagaaaagcttcatggttgccactaattttttcacacactgcatttttgtcatagaggttgcatatggctgg |
114 |
Q |
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|||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
36330404 |
caaaggccaacaagtatagactaatgaagagaaaagcttcatggttgccattaattttttcacacactgcatttttgtcaagtaagttgcatatggctgg |
36330305 |
T |
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| Q |
115 |
ttttaggttagggtaatgtgcttgtaccgtgagtaacgccagtccctgcaacataattcacaata |
179 |
Q |
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||| || |||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |
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| T |
36330304 |
tttcagattagggtaatgtgcttgtactgtgagtaacgccagtccctgcagcatagttcacaata |
36330240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 37919906 - 37919830
Alignment:
| Q |
15 |
caaaggccaacaagtagagaccaatcaagagaaaagcttcatggttgccactaattttttcacacactgcatttttg |
91 |
Q |
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|||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37919906 |
caaaggccaacacgtatagactaatgaagagaaaagcttcatggttgccactaattttttcacgcactgcatttttg |
37919830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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