View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17970_low_3 (Length: 395)

Name: NF17970_low_3
Description: NF17970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17970_low_3
NF17970_low_3
[»] chr7 (10 HSPs)
chr7 (139-395)||(45894552-45894808)
chr7 (72-115)||(36067319-36067362)
chr7 (69-115)||(3987302-3987348)
chr7 (32-115)||(36068136-36068219)
chr7 (69-115)||(6733203-6733249)
chr7 (32-115)||(30480725-30480808)
chr7 (85-115)||(31285493-31285523)
chr7 (85-115)||(31286927-31286957)
chr7 (85-115)||(35394773-35394803)
chr7 (32-60)||(32390920-32390948)
[»] chr8 (8 HSPs)
chr8 (32-141)||(14790669-14790778)
chr8 (32-138)||(14791483-14791589)
chr8 (32-115)||(20112305-20112388)
chr8 (85-115)||(767666-767696)
chr8 (85-115)||(14864995-14865025)
chr8 (85-115)||(32672313-32672343)
chr8 (85-115)||(35124687-35124717)
chr8 (87-115)||(11681631-11681659)
[»] chr3 (17 HSPs)
chr3 (32-141)||(50838288-50838397)
chr3 (32-115)||(54560056-54560139)
chr3 (32-138)||(1576486-1576592)
chr3 (32-138)||(54560846-54560952)
chr3 (32-138)||(47471505-47471611)
chr3 (32-115)||(43546389-43546472)
chr3 (32-115)||(1577540-1577622)
chr3 (77-141)||(50837457-50837521)
chr3 (34-113)||(35942123-35942201)
chr3 (32-115)||(50382769-50382852)
chr3 (85-115)||(1136263-1136293)
chr3 (85-115)||(1137670-1137700)
chr3 (68-114)||(31800429-31800475)
chr3 (85-115)||(49726048-49726078)
chr3 (85-115)||(52946389-52946419)
chr3 (87-115)||(52116933-52116961)
chr3 (87-115)||(52118327-52118355)
[»] chr6 (13 HSPs)
chr6 (32-138)||(15347432-15347538)
chr6 (32-115)||(17732845-17732928)
chr6 (35-115)||(30709514-30709594)
chr6 (32-115)||(6009457-6009540)
chr6 (32-141)||(30710308-30710416)
chr6 (33-138)||(6008641-6008746)
chr6 (85-115)||(1387653-1387683)
chr6 (85-115)||(4137678-4137708)
chr6 (85-115)||(4138976-4139006)
chr6 (85-115)||(10917882-10917912)
chr6 (32-115)||(15348226-15348308)
chr6 (87-115)||(1378478-1378506)
chr6 (87-115)||(1386226-1386254)
[»] chr5 (12 HSPs)
chr5 (32-115)||(5347746-5347829)
chr5 (32-115)||(36429305-36429388)
chr5 (32-138)||(5348535-5348641)
chr5 (32-115)||(36681880-36681961)
chr5 (69-113)||(10326911-10326955)
chr5 (85-115)||(17641777-17641807)
chr5 (85-115)||(19897415-19897445)
chr5 (85-115)||(34088598-34088628)
chr5 (78-115)||(1302843-1302880)
chr5 (68-113)||(29500033-29500078)
chr5 (69-113)||(7491273-7491317)
chr5 (85-138)||(36430119-36430172)
[»] chr2 (4 HSPs)
chr2 (32-115)||(4592650-4592733)
chr2 (68-115)||(45114958-45115005)
chr2 (32-115)||(10256519-10256601)
chr2 (32-115)||(22539141-22539223)
[»] chr4 (13 HSPs)
chr4 (32-138)||(621565-621671)
chr4 (69-115)||(27454939-27454985)
chr4 (32-115)||(49682061-49682143)
chr4 (32-138)||(620470-620576)
chr4 (68-115)||(31633677-31633724)
chr4 (85-115)||(2613654-2613684)
chr4 (85-115)||(3880877-3880907)
chr4 (85-115)||(16508204-16508234)
chr4 (85-115)||(50663018-50663048)
chr4 (85-115)||(50664483-50664513)
chr4 (85-115)||(52897775-52897805)
chr4 (85-138)||(27455767-27455820)
chr4 (87-115)||(56065214-56065242)
[»] chr1 (12 HSPs)
chr1 (32-115)||(47445804-47445888)
chr1 (32-115)||(47445011-47445094)
chr1 (36-115)||(27585314-27585391)
chr1 (85-115)||(4564213-4564243)
chr1 (85-115)||(11343416-11343446)
chr1 (85-115)||(11501436-11501466)
chr1 (85-115)||(14282803-14282833)
chr1 (85-115)||(14284255-14284285)
chr1 (32-115)||(36476000-36476083)
chr1 (85-115)||(38482528-38482558)
chr1 (85-115)||(42813857-42813887)
chr1 (78-115)||(41729910-41729947)
[»] scaffold0102 (2 HSPs)
scaffold0102 (33-115)||(32374-32457)
scaffold0102 (32-144)||(33173-33286)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 139 - 395
Target Start/End: Original strand, 45894552 - 45894808
Alignment:
Q  139 tttcttcttgtgccatttattttttcaacatctagctaccatcaaaaacaaaattactaatatcttttttgagatacgagtcgacattgaaggtcagcta 238  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45894552 tttcttcttgtgccatttattttttcaacatctagctaacttcaaaaacaaaattactaatatcttttttgagatacgagtcgtcattgaaggtcagcta 45894651  T
Q  239 caatctataatttgattcatcataagatttcatcaatgtacaataacacattcaaacaaggtgtcccggtcaaaataatacaaatcaagacattgtctgc 338  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  45894652 caatctataatttgattcatcataagatttcaacagtgtacagtaacacattcatacaaggtgtcctggtcaaaataatacaaatcaagacattgtctgc 45894751  T
Q  339 agtgtaagatttgaattaggatcgtttttctccttaatgaaatctgtgtactttcat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45894752 agtgtaagatttgaattaggatcgtttttctccttaatgaaatctgtgtactttcat 45894808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 36067362 - 36067319
Alignment:
Q  72 tttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  36067362 tttcttaaaaatcaggggggattttgacgaaagttacaatttca 36067319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 3987302 - 3987348
Alignment:
Q  69 aagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||| ||| || ||||||||||||||||||||||||    
T  3987302 aagtttcttaaaaatcaggaggatttttgacgaaagttacaatttca 3987348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 36068136 - 36068219
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||| ||||| |||||||||||       ||| |||| ||||||| |||||| ||||||||||||| ||||||||||    
T  36068136 aattgactaacatttgacaatttcagggggttttttgaaatttcctaaaaatcagggggttttttgacgaaagctacaatttca 36068219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 6733203 - 6733249
Alignment:
Q  69 aagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||    
T  6733203 aagtttcttaaaaatcagggttttttttgacgaaagttacaatttca 6733249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 30480725 - 30480808
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||||| ||||||| |||       ||||| |||||||||| | |||  ||||| ||||||||||||||||||    
T  30480725 aattgactaacgtttgacaatttcaagggattttttgaagtatcttaaaaatcaagggaattttttacgaaagttacaatttca 30480808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 31285523 - 31285493
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  31285523 aggggggtttttgacgaaagttacaatttca 31285493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 31286927 - 31286957
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  31286927 aggggggtttttgacgaaagttacaatttca 31286957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 35394773 - 35394803
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  35394773 aggggggtttttgacgaaagttacaatttca 35394803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 32390920 - 32390948
Alignment:
Q  32 aattgactaacgtttgataatttcagggg 60  Q
    |||||||||||||||||||||||||||||    
T  32390920 aattgactaacgtttgataatttcagggg 32390948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 14790778 - 14790669
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    |||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||    
T  14790778 aattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttcagggggttttttgccta 14790679  T
Q  132 tttactcttt 141  Q
    ||||||||||    
T  14790678 tttactcttt 14790669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 14791483 - 14791589
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    ||||||||||||||||  |||||||||||       |||||||| ||||||| |||||||||||||||||||| ||||||||||       |||||||||    
T  14791483 aattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttcaggggggtttttgccta 14791582  T
Q  132 tttactc 138  Q
    |||||||    
T  14791583 tttactc 14791589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 20112305 - 20112388
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||| ||       |||||||||||||||| |||||  ||||| ||||||||||||||||||    
T  20112305 aattgactaacgtttgataatttcagtggggtttttgaagtttcttaaaaatcaggggttttttttacgaaagttacaatttca 20112388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 767666 - 767696
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  767666 aggggggtttttgacgaaagttacaatttca 767696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 14865025 - 14864995
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  14865025 aggggggtttttgacgaaagttacaatttca 14864995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 32672343 - 32672313
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  32672343 aggggggtttttgacgaaagttacaatttca 32672313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 35124687 - 35124717
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  35124687 aggggggtttttgacgaaagttacaatttca 35124717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 11681631 - 11681659
Alignment:
Q  87 gggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||    
T  11681631 gggggtttttgacgaaagttacaatttca 11681659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 50838288 - 50838397
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  50838288 aattgactaacgtttgataatttcaggggagtttttgaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcagggggatttttgccta 50838387  T
Q  132 tttactcttt 141  Q
    || |||||||    
T  50838388 ttcactcttt 50838397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 54560139 - 54560056
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||||||||||||| |||       |||||||||||||||| |||||||||||||||||||||||||||||||    
T  54560139 aattgactaacgtttgataatttcatgggggtttttgaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttca 54560056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 1576592 - 1576486
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    ||||||||||||||||  |||||||||||       |||||||| ||||||| |||||||||||||||||||| ||||||||||       |||||||||    
T  1576592 aattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttcaggggggtttttgccta 1576493  T
Q  132 tttactc 138  Q
    |||||||    
T  1576492 tttactc 1576486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 54560846 - 54560952
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    ||||||||||||||||  |||||||||||       |||||||| ||||||| |||||||||||||||||||| ||||||||||       |||||||||    
T  54560846 aattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttcaggggggtttttgccta 54560945  T
Q  132 tttactc 138  Q
    |||||||    
T  54560946 tttactc 54560952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 47471505 - 47471611
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    ||||||||||||||||  |||||||||||       |||||||| ||||||| ||||||| |||||||||||| ||||||||||       |||||||||    
T  47471505 aattgactaacgtttggcaatttcaggggggtttttgaagtttcctaaaaatcagggggggttttgacgaaagctacaatttcaaggggttttttgccta 47471604  T
Q  132 tttactc 138  Q
    |||||||    
T  47471605 tttactc 47471611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 43546472 - 43546389
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||||||| ||||||||||||||||| ||       |||||||||||||||| |||  | ||||||||||||||||||||||||    
T  43546472 aattgactgacgtttgataatttcagaggggtttttgaagtttcttaaaaatcaggaagatttttgacgaaagttacaatttca 43546389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 1577540 - 1577622
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||||  |||||||||||       |||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  1577540 aattgactaacgtttgtcaatttcagggggttttt-gaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttca 1577622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 50837521 - 50837457
Alignment:
Q  77 taaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgcctatttactcttt 141  Q
    ||||||| |||||||||||||||||||||||||||||||       ||||||||||| |||||||    
T  50837521 taaaaatcaggggggtttttgacgaaagttacaatttcagggggatttttgcctattcactcttt 50837457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 35942201 - 35942123
Alignment:
Q  34 ttgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaattt 113  Q
    ||||||||||||||| |||||||||||        ||||||||||||||| ||| | |||||||||||||||||||||||    
T  35942201 ttgactaacgtttgacaatttcaggggagtttta-aagtttcttaaaaatcaggagagtttttgacgaaagttacaattt 35942123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 50382769 - 50382852
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||  |||||| |||       |||||||||||||| | ||||| |||||||||||||||||| ||||||    
T  50382769 aattgactaacgtttgaccatttcatgggggtgtttgaagtttcttaaaagtcaggggagtttttgacgaaagttacgatttca 50382852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 1136293 - 1136263
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  1136293 aggggggtttttgacgaaagttacaatttca 1136263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 1137670 - 1137700
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  1137670 aggggggtttttgacgaaagttacaatttca 1137700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 31800429 - 31800475
Alignment:
Q  68 gaagtttcttaaaaattaggggggtttttgacgaaagttacaatttc 114  Q
    |||||||||||||||| | |||  |||||||||||||||||||||||    
T  31800429 gaagtttcttaaaaatcatgggattttttgacgaaagttacaatttc 31800475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 49726048 - 49726078
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  49726048 aggggggtttttgacgaaagttacaatttca 49726078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 52946419 - 52946389
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  52946419 aggggggtttttgacgaaagttacaatttca 52946389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 52116961 - 52116933
Alignment:
Q  87 gggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||    
T  52116961 gggggtttttgacgaaagttacaatttca 52116933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 52118327 - 52118355
Alignment:
Q  87 gggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||    
T  52118327 gggggtttttgacgaaagttacaatttca 52118355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 15347538 - 15347432
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    |||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||    
T  15347538 aattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttcaggggggtttttgccta 15347439  T
Q  132 tttactc 138  Q
    |||||||    
T  15347438 tttactc 15347432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 17732845 - 17732928
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||| |||||||||||||||||||||||       |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  17732845 aattggctaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcagggggttttttgacgaaagttacaatttca 17732928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 30709594 - 30709514
Alignment:
Q  35 tgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||| ||||||||||||||||| ||       |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  30709594 tgactgacgtttgataatttcagaggcgtttttgaagtttcttaaaaatcagggggatttttgacgaaagttacaatttca 30709514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 6009457 - 6009540
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||       |||||||||||||||| |||   ||||||||||||||||| |||||||    
T  6009457 aattgactaacgtttgataatttcaggggagtttttgaagtttcttaaaaatcaggaaagtttttgacgaaagttataatttca 6009540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 30710308 - 30710416
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    ||||||||||||||||  |||||||||||       |||||||| ||||||| |||||||||||||||||||| ||||||||||       |||||||||    
T  30710308 aattgactaacgtttggcaatttcagggggttttt-gaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttcaagggggtttttgccta 30710406  T
Q  132 tttactcttt 141  Q
    ||||||||||    
T  30710407 tttactcttt 30710416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 6008746 - 6008641
Alignment:
Q  33 attgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgcctat 132  Q
    |||||||||||||||  |||||||||||       |||||||| ||||||| |||| ||||||||||||||| ||||||||||       ||||||||||    
T  6008746 attgactaacgtttgtcaatttcagggggctttttgaagtttcctaaaaatcagggaggtttttgacgaaagctacaatttcaggggtttttttgcctat 6008647  T
Q  133 ttactc 138  Q
    ||||||    
T  6008646 ttactc 6008641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 1387653 - 1387683
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  1387653 aggggggtttttgacgaaagttacaatttca 1387683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 4137708 - 4137678
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  4137708 aggggggtttttgacgaaagttacaatttca 4137678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 4138976 - 4139006
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  4138976 aggggggtttttgacgaaagttacaatttca 4139006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 10917912 - 10917882
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  10917912 aggggggtttttgacgaaagttacaatttca 10917882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 15348226 - 15348308
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||||  |||||||||||       |||||||| ||||||| | |||| ||||||||||||| ||||||||||    
T  15348226 aattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatca-ggggatttttgacgaaagctacaatttca 15348308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 1378506 - 1378478
Alignment:
Q  87 gggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||    
T  1378506 gggggtttttgacgaaagttacaatttca 1378478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 1386254 - 1386226
Alignment:
Q  87 gggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||    
T  1386254 gggggtttttgacgaaagttacaatttca 1386226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 5347829 - 5347746
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||||    
T  5347829 aattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttca 5347746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 36429388 - 36429305
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||||||| ||||||||||||||||||||       |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  36429388 aattgactgacgtttgataatttcaggggcgtttttgaagtttcttaaaaatcagggggatttttgacgaaagttacaatttca 36429305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 5348535 - 5348641
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    ||||||||||||||||  |||||||||||       |||||||| ||||||| |||||||||||||||||||| ||||||||||       |||||||||    
T  5348535 aattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttcaggggggtttttgccta 5348634  T
Q  132 tttactc 138  Q
    |||||||    
T  5348635 tttactc 5348641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 36681880 - 36681961
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||||| ||||||| |||       ||||||| |||||||| |||||| ||||| ||||||||||||||||||    
T  36681880 aattgactaacgtttgacaatttcatgggggttt--gaagttttttaaaaatcagggggatttttaacgaaagttacaatttca 36681961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 10326911 - 10326955
Alignment:
Q  69 aagtttcttaaaaattaggggggtttttgacgaaagttacaattt 113  Q
    ||||||||||||||| | || ||||||||||||||||||||||||    
T  10326911 aagtttcttaaaaatcatggaggtttttgacgaaagttacaattt 10326955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 17641777 - 17641807
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  17641777 aggggggtttttgacgaaagttacaatttca 17641807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 19897445 - 19897415
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  19897445 aggggggtttttgacgaaagttacaatttca 19897415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 34088628 - 34088598
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  34088628 aggggggtttttgacgaaagttacaatttca 34088598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 1302843 - 1302880
Alignment:
Q  78 aaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  1302843 aaaatttagggggatttttgacgaaagttacaatttca 1302880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 29500078 - 29500033
Alignment:
Q  68 gaagtttcttaaaaattaggggggtttttgacgaaagttacaattt 113  Q
    ||||||||||||||||||||||| ||||| || ||||||| |||||    
T  29500078 gaagtttcttaaaaattagggggatttttaacaaaagttataattt 29500033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 7491317 - 7491273
Alignment:
Q  69 aagtttcttaaaaattaggggggtttttgacgaaagttacaattt 113  Q
    ||||||||||||| | |||| | ||||||||||||||||||||||    
T  7491317 aagtttcttaaaagtcagggtgatttttgacgaaagttacaattt 7491273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 36430119 - 36430172
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttcannnnnnnttttgcctatttactc 138  Q
    |||||||||||||||||||| ||||||||||       ||||||||||||||||    
T  36430119 aggggggtttttgacgaaagctacaatttcaagggggtttttgcctatttactc 36430172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 4592733 - 4592650
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||||||||||||| |||       |||||||||||||||| |||||||||||||||||||||||||||||||    
T  4592733 aattgactaacgtttgataatttcatgggggtttttgaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttca 4592650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 45114958 - 45115005
Alignment:
Q  68 gaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||| | | |||||||||||||||||||||||||||||    
T  45114958 gaagtttcttaaaagtcaagggggtttttgacgaaagttacaatttca 45115005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 10256519 - 10256601
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||||  |||||||||||       |||||||| || |||| |||||||||||||||||||| ||||||||||    
T  10256519 aattgactaacgtttggcaatttcagggggttttt-gaagtttcctagaaatcaggggggtttttgacgaaagctacaatttca 10256601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 22539141 - 22539223
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||||| ||||||| |||       ||||||| |||||| | |||||| || |||||||||||||||||||||    
T  22539141 aattgactaacgtttgacaatttcatggggttttttgaagttttttaaaagtcaggggg-ttcttgacgaaagttacaatttca 22539223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 621565 - 621671
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    ||||||||||||||||  |||||||||||       |||||||| ||||||| |||||||||||||||||||| ||||||||||       |||||||||    
T  621565 aattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttcaggggggtttttgccta 621664  T
Q  132 tttactc 138  Q
    |||||||    
T  621665 tttactc 621671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 27454985 - 27454939
Alignment:
Q  69 aagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  27454985 aagtttcttaaaaatcaggggggtttttgacgaaagttacaatttca 27454939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 49682061 - 49682143
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||| ||||||||||||||||       |||||||||||||||||||||   ||||||||||||||||||||||||    
T  49682061 aattgactaacgattgataatttcaggggattttt-gaagtttcttaaaaattagggaattttttgacgaaagttacaatttca 49682143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 620576 - 620470
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgccta 131  Q
    ||||||||||||||||  |||||||||||       |||||||| ||||||| |||||| ||||||||||||  ||||||||||       |||||||||    
T  620576 aattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcagggggatttttgacgaaaactacaatttcagaggggtttttgccta 620477  T
Q  132 tttactc 138  Q
    |||||||    
T  620476 tttactc 620470  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 31633677 - 31633724
Alignment:
Q  68 gaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||||    
T  31633677 gaagtttcttaaaaattaagggggtttttgacgaaacttccaatttca 31633724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 2613684 - 2613654
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  2613684 aggggggtttttgacgaaagttacaatttca 2613654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 3880907 - 3880877
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  3880907 aggggggtttttgacgaaagttacaatttca 3880877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 16508204 - 16508234
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  16508204 aggggggtttttgacgaaagttacaatttca 16508234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 50663048 - 50663018
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  50663048 aggggggtttttgacgaaagttacaatttca 50663018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 50664483 - 50664513
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  50664483 aggggggtttttgacgaaagttacaatttca 50664513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 52897775 - 52897805
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  52897775 aggggggtttttgacgaaagttacaatttca 52897805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 27455767 - 27455820
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttcannnnnnnttttgcctatttactc 138  Q
    |||||||||||||||||||| ||||||||||       ||||||||||||||||    
T  27455767 aggggggtttttgacgaaagctacaatttcaagggggtttttgcctatttactc 27455820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 56065214 - 56065242
Alignment:
Q  87 gggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||    
T  56065214 gggggtttttgacgaaagttacaatttca 56065242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 47445804 - 47445888
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattagggggg-tttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||       |||||||||||||||| ||||||| ||||||| |||| |||||||||||    
T  47445804 aattgactaacgtttgataatttcaggggtttttttgaagtttcttaaaaatcaggggggatttttgatgaaaattacaatttca 47445888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 47445094 - 47445011
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||||| ||||||| |||       |||||||| | ||||| ||||||| |||||||||||| ||||||||||    
T  47445094 aattgactaacgtttgacaatttcatgggggtttttgaagtttcctgaaaatcagggggggttttgacgaaagctacaatttca 47445011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 27585391 - 27585314
Alignment:
Q  36 gactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||| |||||||||||       ||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  27585391 gactaacgtttgacaatttcagggggttttt-gaagtttcttaaaaatt-gggggatttttgacgaaaggtacaatttca 27585314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 4564213 - 4564243
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  4564213 aggggggtttttgacgaaagttacaatttca 4564243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 11343416 - 11343446
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  11343416 aggggggtttttgacgaaagttacaatttca 11343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 11501436 - 11501466
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  11501436 aggggggtttttgacgaaagttacaatttca 11501466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 14282833 - 14282803
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  14282833 aggggggtttttgacgaaagttacaatttca 14282803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 14284255 - 14284285
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  14284255 aggggggtttttgacgaaagttacaatttca 14284285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 36476000 - 36476083
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||| | ||||||| |||       |||||||||||||| ||||   || |||||||||||||||||||||||    
T  36476000 aattgactaacgtttaacaatttcatgggggtttttgaagtttcttaaaagttagatagggttttgacgaaagttacaatttca 36476083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 38482528 - 38482558
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  38482528 aggggggtttttgacgaaagttacaatttca 38482558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 42813857 - 42813887
Alignment:
Q  85 aggggggtttttgacgaaagttacaatttca 115  Q
    |||||||||||||||||||||||||||||||    
T  42813857 aggggggtttttgacgaaagttacaatttca 42813887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 41729910 - 41729947
Alignment:
Q  78 aaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  41729910 aaaatttaggggggtttttgacgaaaattacaatttca 41729947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 32457 - 32374
Alignment:
Q  33 attgactaacgtttgataatttcag-gggnnnnnnngaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 115  Q
    ||||||||||||||||||||||| | |||       |||||||||||||||| || ||| ||||||||||||||||||||||||    
T  32457 attgactaacgtttgataatttccgagggggtttttgaagtttcttaaaaatcagagggatttttgacgaaagttacaatttca 32374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 33173 - 33286
Alignment:
Q  32 aattgactaacgtttgataatttcaggggnnnnnnng-aagtttcttaaaaattaggggggtttttgacgaaagttacaatttcannnnnnnttttgcct 130  Q
    ||||||||||||||||| |||||||||||       | ||||||| ||||||| ||||| |||||| ||||||| ||||||||||       ||||||||    
T  33173 aattgactaacgtttgacaatttcaggggggtttttggaagtttcctaaaaatcaggggagttttttacgaaagctacaatttcaaggttttttttgcct 33272  T
Q  131 atttactctttctt 144  Q
    |||||||| |||||    
T  33273 atttactcgttctt 33286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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