View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17970_low_5 (Length: 218)
Name: NF17970_low_5
Description: NF17970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17970_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 23225695 - 23225510
Alignment:
| Q |
16 |
aagaatgttaataatggttgatctgaatgttgtttcattgatatatacatctatttatgtgt-tatctatatcttagcatttcttttagaataaaattga |
114 |
Q |
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| T |
23225695 |
aagaatgttaataatggttgatctgaatgttgtttcattgatatatacatctatttatgtgtgtatctatatcttagcatttcttttagaataaaattga |
23225596 |
T |
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| Q |
115 |
aactaagaaaagccacaaagctaatcatcctgtcaagagaaatttctaatatgtgaccaattgaatctgtaaccaaaagtgtgccacct |
203 |
Q |
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| T |
23225595 |
aactaagaaaggccacaaagctaatc---ctgtcaagagaaatttctaatatgtgaccaattgaatctgtaaccaaaagtgtgccacct |
23225510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23201411 - 23201463
Alignment:
| Q |
16 |
aagaatgttaataatggttgatctgaatgttgtttcattgatatatacatcta |
68 |
Q |
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||||||||||| |||| |||| ||||||||||||||||||||||||||||| |
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| T |
23201411 |
aagaatgttaacgatggatgattggaatgttgtttcattgatatatacatcta |
23201463 |
T |
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