View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_high_11 (Length: 497)
Name: NF17971_high_11
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 43963675 - 43963208
Alignment:
| Q |
18 |
ctagatatctccaccacattgctctcagagaccatagccatcaacaaccgcaaagactcgagtttaatattcaaatcttcatcatccagagatttaatca |
117 |
Q |
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| T |
43963675 |
ctagatatctccaccacattgctctcagacaccatagccatcaacaaccgcaaagactcaattttaatattcgaatcttcatcatccagagatttaatca |
43963576 |
T |
|
| Q |
118 |
cagcatccttattctctagcactgcccacaaatgcttcggtgcagcaacggaaagcgcgtgcaaaccaagatacctaagattaggatcctgatcaaccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43963575 |
cagcatccttattctctagcactgcccacaaatgcttcggtgcagcaacggaaagcgcgtgcaaaccaagatacctaagattaggatcctgatcaaccaa |
43963476 |
T |
|
| Q |
218 |
caactccctaattttcgtaaccgccaacttaacagcagactcatgatcactcaaactagtaattacagtcctcacacactcaaaaacaagcgatttcgct |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43963475 |
caactccctaatttttgtaaccgccaacttaacagcagactcatgatcactcaaactagtaatcacagtcctcacacactcaaaaacaagcgatttcgct |
43963376 |
T |
|
| Q |
318 |
ccagatcttctaatatgctcacaaataggttcaacaatcctcttccctaacctaggttccaaaggagccaacctagcaaaaatcttcaaaaccttaataa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43963375 |
ccagatcttctaatatgctcacaaataggttcaacaatcctcttccctaacctaggttccaaaggagccaacctagcaaaaatcttcaaaaccttaataa |
43963276 |
T |
|
| Q |
418 |
gcacccaattattcttagaatcaactaaaatcctataaaactcgggtgccaacggaagatacgatctc |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43963275 |
gcacccaattattcttagaatcaactaaaatcctataaaactcgggtgccaatggaagatacgatctc |
43963208 |
T |
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