View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_high_13 (Length: 466)
Name: NF17971_high_13
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 34358238 - 34357792
Alignment:
| Q |
1 |
gatttatgcatattcatatacgaataacgcaaacagagaatacacaagatttgataacctgagttcggctaattttgtttatgtctacgactaattttac |
100 |
Q |
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| T |
34358238 |
gatttatgcatattcatatacgaataacgcaaacagagaatatacaagatttgatcacc-gagtttggctaattttgtttatgtctacgactaattttac |
34358140 |
T |
|
| Q |
101 |
gttgaagtctctttgtattgttcaatctttgtgttacgtattacaacttatgtttaaatgctacggtttaatttacaagattatctttataaactgtgag |
200 |
Q |
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| T |
34358139 |
gttgaagtctctttgcattgttcaagctttgtgttacgtattactacttatgtttaaatgctacagttcaatttacaagattatctttacaaactgtgag |
34358040 |
T |
|
| Q |
201 |
cggtttgtctacttatcaataaactatgagtcatacttaatgaacaaggaattaacaaagcactaacaagtactcatataaaatcaaatcatgtgatagt |
300 |
Q |
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| T |
34358039 |
cggtttgtttactta--aataaactatgagtcatacttaataaataaggaattaacaaagcactaacaaatactcatataaaatcaaatcatgtgatagt |
34357942 |
T |
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| Q |
301 |
aagtctagaatgagtgtacttatgaatttcatattatatctcattatatggttatttttgcatgtaaaatgtataggaaaacatatggcacacatagaaa |
400 |
Q |
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| T |
34357941 |
aagtctaaaatgagtgtacttatgaatttcatattatatctcattatatggttatttttgcatgtaaaatgtataggaaaacatatggcacacatagaaa |
34357842 |
T |
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| Q |
401 |
ctatagaagacttgcctgcttcctatggtgctaaaaagagtgcagataat |
450 |
Q |
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| T |
34357841 |
ctatagaagacttgcctgcttcctatggtgctaaaaagagtgcagataat |
34357792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 33832807 - 33832857
Alignment:
| Q |
133 |
gttacgtattacaacttatgtttaaatgctacggtttaatttacaagatta |
183 |
Q |
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|||||||||||||| | ||||||||| ||||||| ||||||||||||||| |
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| T |
33832807 |
gttacgtattacaatgtgtgtttaaatactacggtctaatttacaagatta |
33832857 |
T |
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