View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17971_high_2 (Length: 625)

Name: NF17971_high_2
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17971_high_2
NF17971_high_2
[»] chr3 (14 HSPs)
chr3 (137-610)||(17502898-17503371)
chr3 (137-612)||(17474784-17475259)
chr3 (1-54)||(17502704-17502757)
chr3 (51-98)||(17502827-17502874)
chr3 (1-54)||(17474582-17474635)
chr3 (102-139)||(1272557-1272594)
chr3 (106-139)||(43139817-43139850)
chr3 (102-139)||(45103102-45103139)
chr3 (108-139)||(1801445-1801476)
chr3 (108-139)||(41752963-41752994)
chr3 (102-136)||(49414525-49414559)
chr3 (102-139)||(30734510-30734547)
chr3 (108-137)||(47492157-47492186)
chr3 (108-136)||(1801597-1801625)
[»] chr5 (16 HSPs)
chr5 (228-473)||(39543152-39543403)
chr5 (228-473)||(39553171-39553422)
chr5 (102-139)||(2953298-2953335)
chr5 (102-139)||(16971252-16971289)
chr5 (102-139)||(30117821-30117858)
chr5 (108-139)||(19655157-19655188)
chr5 (102-137)||(28818919-28818954)
chr5 (108-139)||(39777050-39777081)
chr5 (102-139)||(291205-291242)
chr5 (102-139)||(2093930-2093967)
chr5 (108-137)||(2953206-2953235)
chr5 (102-139)||(3899947-3899984)
chr5 (106-139)||(12913911-12913944)
chr5 (102-139)||(29699475-29699512)
chr5 (402-467)||(39586458-39586523)
chr5 (108-136)||(3899847-3899875)
[»] chr4 (16 HSPs)
chr4 (102-139)||(47661950-47661987)
chr4 (102-139)||(23444262-23444299)
chr4 (106-139)||(23444377-23444410)
chr4 (102-139)||(42375118-42375155)
chr4 (100-135)||(24006165-24006200)
chr4 (100-139)||(44380038-44380077)
chr4 (102-137)||(47404587-47404622)
chr4 (108-139)||(51265444-51265475)
chr4 (102-136)||(50384107-50384141)
chr4 (102-135)||(31430463-31430496)
chr4 (108-137)||(42375018-42375047)
chr4 (108-137)||(47404686-47404715)
chr4 (102-139)||(51265553-51265590)
chr4 (111-139)||(3862654-3862682)
chr4 (111-139)||(3871411-3871439)
chr4 (108-136)||(31430560-31430588)
[»] chr1 (17 HSPs)
chr1 (102-139)||(15220919-15220956)
chr1 (106-139)||(44706892-44706925)
chr1 (102-139)||(48993910-48993947)
chr1 (102-139)||(49444906-49444943)
chr1 (100-136)||(29371368-29371404)
chr1 (102-133)||(26514245-26514276)
chr1 (108-139)||(29179705-29179736)
chr1 (108-139)||(46931996-46932027)
chr1 (108-139)||(48994025-48994056)
chr1 (106-136)||(34062215-34062245)
chr1 (108-138)||(36290516-36290546)
chr1 (102-136)||(48823887-48823921)
chr1 (100-137)||(15220811-15220848)
chr1 (102-139)||(28395630-28395667)
chr1 (102-139)||(29179590-29179627)
chr1 (102-135)||(34062312-34062345)
chr1 (108-136)||(49445013-49445041)
[»] chr8 (9 HSPs)
chr8 (102-139)||(5033269-5033306)
chr8 (102-139)||(33841584-33841621)
chr8 (108-139)||(5033160-5033191)
chr8 (108-139)||(8243496-8243527)
chr8 (108-139)||(33841699-33841730)
chr8 (108-139)||(35441077-35441108)
chr8 (100-139)||(43844577-43844616)
chr8 (102-139)||(5667090-5667127)
chr8 (102-139)||(35440962-35440999)
[»] chr7 (12 HSPs)
chr7 (102-139)||(11016977-11017014)
chr7 (102-139)||(42628403-42628440)
chr7 (108-139)||(11016868-11016899)
chr7 (108-139)||(34854803-34854834)
chr7 (108-139)||(41018336-41018367)
chr7 (108-139)||(45231958-45231989)
chr7 (107-137)||(4649327-4649357)
chr7 (102-139)||(4290653-4290690)
chr7 (108-137)||(38975804-38975833)
chr7 (106-135)||(42628301-42628330)
chr7 (100-136)||(25001347-25001383)
chr7 (108-136)||(29053416-29053444)
[»] chr2 (12 HSPs)
chr2 (102-139)||(14892368-14892405)
chr2 (102-139)||(38933695-38933732)
chr2 (108-139)||(6217223-6217254)
chr2 (100-139)||(14470583-14470622)
chr2 (108-139)||(16514423-16514454)
chr2 (108-137)||(9172989-9173018)
chr2 (106-139)||(9173089-9173122)
chr2 (102-139)||(16514532-16514569)
chr2 (108-136)||(2893971-2893999)
chr2 (105-137)||(2894064-2894096)
chr2 (108-136)||(6217326-6217354)
chr2 (111-139)||(29508692-29508720)
[»] scaffold0180 (1 HSPs)
scaffold0180 (100-135)||(19113-19148)
[»] scaffold0016 (1 HSPs)
scaffold0016 (102-135)||(49696-49729)
[»] chr6 (4 HSPs)
chr6 (106-139)||(13043445-13043478)
chr6 (102-139)||(13043565-13043602)
chr6 (102-139)||(24618594-24618631)
chr6 (100-136)||(10521849-10521885)
[»] scaffold0481 (1 HSPs)
scaffold0481 (103-139)||(2984-3020)
[»] scaffold0047 (1 HSPs)
scaffold0047 (108-136)||(63765-63793)


Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 137 - 610
Target Start/End: Original strand, 17502898 - 17503371
Alignment:
Q  137 tgagataatcccaagtcaaaggcataaagacatgatctgcctcagactctatggtgtccaattgctctttcaaaagatgcatgtaaacaacccaatcacc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17502898 tgagataatcccaagtcaaaggcataaagacatgatctgcctcagactctatgatgtccaattgctctttcaaaagatgcatgtaaacaacccaatcacc 17502997  T
Q  237 attccttagagggcttggcattggcatcacataaccagcttcacctccccaaggaaaatggtaggatgcaaaaacaacttttccccatccaaaatccacc 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17502998 attccttagagggcttggcattggcatcacataaccagcttcacctccccaaggaaaatggtaggatgcaaacacaacttttccccatccaaaatccacc 17503097  T
Q  337 ttgtcttctggaaatctttgcccggaagatactacaaaagccggcccttcattggtgccaccactataaatcttcgccaatccaggaacaggtcgatgtg 436  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17503098 ttgtcttccggaaatctttgcccggaagataccacaaaagccggcccttcattggtgccaccactataaatcttcgccaatccaggaacaggtcgatgtg 17503197  T
Q  437 cttccacccaatcaatgagccctaagaaatgctcctcagttgttgatactgacacaaactcgcgaaccttgtcaaccacccaccctaatggcttatcgac 536  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17503198 cttccacccaatcaatgagccctaggaaatgttcctcagttgttgctactgacacaaactcgcgaacctcgtcaaccacccaccctaatggcttatcgac 17503297  T
Q  537 caactcctccactgatttcccgccaaatgggatagaaagaacattaccaaaatagtgtgtcatcattgcttctc 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17503298 caactcctccactgatttcccgccaaatgggatagaaagaacattaccaaaatagtgtgtcatcaatgcttctc 17503371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 137 - 612
Target Start/End: Original strand, 17474784 - 17475259
Alignment:
Q  137 tgagataatcccaagtcaaaggcataaagacatgatctgcctcagactctatggtgtccaattgctctttcaaaagatgcatgtaaacaacccaatcacc 236  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||||||||  |||||||||| ||||||| |||||||||    
T  17474784 tgagataatcccaagtcaaaggcttaaagacatgatctgcctcggactctatgatctccaattgctcttttgaaagatgcatataaacaatccaatcacc 17474883  T
Q  237 attccttagagggcttggcattggcatcacataaccagcttcacctccccaaggaaaatggtaggatgcaaaaacaacttttccccatccaaaatccacc 336  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  17474884 attccttaaagggcttggcattggcatcacataaccagtttcaccaccccatggaaaatggtaggatgcaaacacaacttttccccatccaaaatccacc 17474983  T
Q  337 ttgtcttctggaaatctttgcccggaagatactacaaaagccggcccttcattggtgccaccactataaatcttcgccaatccaggaacaggtcgatgtg 436  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | |||| ||||||||||| ||||||||| |||||||| ||||    
T  17474984 ttgtcttctggaaatctttgcccggaagataccacaaaagccggcccttcattggggtcgccacaataaatcttcgtcaatccaggtacaggtcggtgtg 17475083  T
Q  437 cttccacccaatcaatgagccctaagaaatgctcctcagttgttgatactgacacaaactcgcgaaccttgtcaaccacccaccctaatggcttatcgac 536  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||| ||| || |||||||| |||||||| ||||||||||||||||||||||||||||     
T  17475084 cttccacccagtcaatgagccctaagaagtgctcctccgttgttgctaccgatacaaactcacgaaccttatcaaccacccaccctaatggcttatcgat 17475183  T
Q  537 caactcctccactgatttcccgccaaatgggatagaaagaacattaccaaaatagtgtgtcatcattgcttctctc 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17475184 caactcctccactgatttcccgccaaatgggatagaaagaacattaccaaaatagtgggtcatcattgcttctctc 17475259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17502704 - 17502757
Alignment:
Q  1 attaaagtaaaacgtagaataaccaaacccacaaccattataaattaacaatgt 54  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17502704 attaaagtaaaacgtagaataaccaaatccacaaccattataaattaacaatgt 17502757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 17502827 - 17502874
Alignment:
Q  51 atgtccaaacttttaaccactaaaacgccaagtcaacatgcatgatta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17502827 atgtccaaacttttaaccactaaaacgccaagtcaacatgcatgatta 17502874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17474582 - 17474635
Alignment:
Q  1 attaaagtaaaacgtagaataaccaaacccacaaccattataaattaacaatgt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  17474582 attaaagtaaaacgtagaataaccaaacccacaaccattataattgaacaatgt 17474635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 1272594 - 1272557
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  1272594 tagcacttgggtgacatagagttgggtgacattggtga 1272557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 43139850 - 43139817
Alignment:
Q  106 atttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||||    
T  43139850 atttgggtgacatagagttgggtgacattggtga 43139817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 45103102 - 45103139
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  45103102 tagcacttgggtgacatagagttgggtgacattggtga 45103139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 1801445 - 1801476
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  1801445 ttgggtgacatagagttgggtgacattggtga 1801476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 41752963 - 41752994
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  41752963 ttgggtgacatagagttgggtgacattggtga 41752994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 49414559 - 49414525
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattgg 136  Q
    ||||| |||||||||||||||||||||||||||||    
T  49414559 tagcacttgggtgacatagagttgggtgacattgg 49414525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 30734547 - 30734510
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  30734547 tagcacttgggtgacatagagttaggtgacattggtga 30734510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 47492186 - 47492157
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggt 137  Q
    ||||||||||||||||||||||||||||||    
T  47492186 ttgggtgacatagagttgggtgacattggt 47492157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 1801625 - 1801597
Alignment:
Q  108 ttgggtgacatagagttgggtgacattgg 136  Q
    |||||||||||||||||||||||||||||    
T  1801625 ttgggtgacatagagttgggtgacattgg 1801597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 228 - 473
Target Start/End: Original strand, 39543152 - 39543403
Alignment:
Q  228 ccaatcaccattccttagagggcttggcattggcatcacataaccagcttcacctccccaaggaaaatggtaggatgcaaaaacaacttttccccatcca 327  Q
    ||||||||||||||||  |||||||||||||||||| ||||| |||||   |||||||||||||||||| || ||| |||| |||   || |||||||||    
T  39543152 ccaatcaccattccttttagggcttggcattggcataacatagccagcactacctccccaaggaaaatgataagatccaaacacaggcttcccccatcca 39543251  T
Q  328 aaatccaccttgtcttctggaaatctttgcccggaagatactacaaaagccggccctt------cattggtgccaccactataaatcttcgccaatccag 421  Q
    ||||| |||||    |||||||| || ||||| |||||||| ||||| |  || ||||      ||   ||||  |||| ||||||| | ||||||||||    
T  39543252 aaatcaaccttcgactctggaaacctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatccag 39543351  T
Q  422 gaacaggtcgatgtgcttccacccaatcaatgagccctaagaaatgctcctc 473  Q
    |||| ||||||||  |||||||||||||||| || || ||||||||||||||    
T  39543352 gaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctc 39543403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 228 - 473
Target Start/End: Original strand, 39553171 - 39553422
Alignment:
Q  228 ccaatcaccattccttagagggcttggcattggcatcacataaccagcttcacctccccaaggaaaatggtaggatgcaaaaacaacttttccccatcca 327  Q
    ||||||||||||||||  |||||||||||||||||| ||||| |||||   |||||||||||||||||| || ||| |||| |||   || |||||||||    
T  39553171 ccaatcaccattccttttagggcttggcattggcataacatagccagcactacctccccaaggaaaatgataagatccaaacacaggcttcccccatcca 39553270  T
Q  328 aaatccaccttgtcttctggaaatctttgcccggaagatactacaaaagccggccctt------cattggtgccaccactataaatcttcgccaatccag 421  Q
    ||||| |||||    |||||||| || ||||| |||||||| ||||| |  || ||||      ||   ||||  |||| ||||||| | ||||||||||    
T  39553271 aaatcaaccttcgactctggaaacctctgccctgaagatacaacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatccag 39553370  T
Q  422 gaacaggtcgatgtgcttccacccaatcaatgagccctaagaaatgctcctc 473  Q
    |||| ||||||||  |||||||||||||||| || || ||||||||||||||    
T  39553371 gaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctc 39553422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 2953335 - 2953298
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  2953335 tagcacttgggtgacatagagttgggtgacattggtga 2953298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 16971289 - 16971252
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  16971289 tagcacttgggtgacatagagttgggtgacattggtga 16971252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 30117821 - 30117858
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    |||||||||||||| |||||||||||||||||||||||    
T  30117821 tagcatttgggtgatatagagttgggtgacattggtga 30117858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 19655157 - 19655188
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  19655157 ttgggtgacatagagttgggtgacattggtga 19655188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 28818919 - 28818954
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggt 137  Q
    ||||| ||||||||||||||||||||||||||||||    
T  28818919 tagcacttgggtgacatagagttgggtgacattggt 28818954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 39777050 - 39777081
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  39777050 ttgggtgacatagagttgggtgacattggtga 39777081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 291242 - 291205
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  291242 tagcacttgggtgatatagagttgggtgacattggtga 291205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 2093930 - 2093967
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  2093930 tagcacttgggtgacatagagttgggtgatattggtga 2093967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 2953206 - 2953235
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggt 137  Q
    ||||||||||||||||||||||||||||||    
T  2953206 ttgggtgacatagagttgggtgacattggt 2953235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 3899984 - 3899947
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  3899984 tagcacttgggtgacttagagttgggtgacattggtga 3899947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 12913944 - 12913911
Alignment:
Q  106 atttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||    
T  12913944 atttgtgtgacatagagttgggtgacattggtga 12913911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 29699512 - 29699475
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  29699512 tagcacttgggtgacatagagttgggtgatattggtga 29699475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 467
Target Start/End: Original strand, 39586458 - 39586523
Alignment:
Q  402 ataaatcttcgccaatccaggaacaggtcgatgtgcttccacccaatcaatgagccctaagaaatg 467  Q
    ||||||| | |||||||| ||||| ||||||||  |||||||||||||||| || || ||||||||    
T  39586458 ataaatccttgccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatg 39586523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 3899847 - 3899875
Alignment:
Q  108 ttgggtgacatagagttgggtgacattgg 136  Q
    |||||||||||||||||||||||||||||    
T  3899847 ttgggtgacatagagttgggtgacattgg 3899875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 47661987 - 47661950
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47661987 tagcatttgggtgacatagagttgggtgacattggtga 47661950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 23444262 - 23444299
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    |||||||||||| |||||||||||||||||||||||||    
T  23444262 tagcatttgggtaacatagagttgggtgacattggtga 23444299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 23444410 - 23444377
Alignment:
Q  106 atttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||||    
T  23444410 atttgggtgacatagagttgggtgacattggtga 23444377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 42375155 - 42375118
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  42375155 tagcacttgggtgacatagagttgggtgacattggtga 42375118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 24006200 - 24006165
Alignment:
Q  100 gatagcatttgggtgacatagagttgggtgacattg 135  Q
    ||||||| ||||||||||||||||||||||||||||    
T  24006200 gatagcacttgggtgacatagagttgggtgacattg 24006165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 44380077 - 44380038
Alignment:
Q  100 gatagcatttgggtgacatagagttgggtgacattggtga 139  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  44380077 gataacatttgggtgacatagagttgagtgacattggtga 44380038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 47404587 - 47404622
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggt 137  Q
    ||||| ||||||||||||||||||||||||||||||    
T  47404587 tagcacttgggtgacatagagttgggtgacattggt 47404622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 51265444 - 51265475
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  51265444 ttgggtgacatagagttgggtgacattggtga 51265475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 50384107 - 50384141
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattgg 136  Q
    ||||| |||||||||||||||||||||||||||||    
T  50384107 tagcacttgggtgacatagagttgggtgacattgg 50384141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 31430463 - 31430496
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattg 135  Q
    ||||| ||||||||||||||||||||||||||||    
T  31430463 tagcacttgggtgacatagagttgggtgacattg 31430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 42375018 - 42375047
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggt 137  Q
    ||||||||||||||||||||||||||||||    
T  42375018 ttgggtgacatagagttgggtgacattggt 42375047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 47404715 - 47404686
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggt 137  Q
    ||||||||||||||||||||||||||||||    
T  47404715 ttgggtgacatagagttgggtgacattggt 47404686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 51265590 - 51265553
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  51265590 tagcacttgggtgacttagagttgggtgacattggtga 51265553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 139
Target Start/End: Complemental strand, 3862682 - 3862654
Alignment:
Q  111 ggtgacatagagttgggtgacattggtga 139  Q
    |||||||||||||||||||||||||||||    
T  3862682 ggtgacatagagttgggtgacattggtga 3862654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 139
Target Start/End: Complemental strand, 3871439 - 3871411
Alignment:
Q  111 ggtgacatagagttgggtgacattggtga 139  Q
    |||||||||||||||||||||||||||||    
T  3871439 ggtgacatagagttgggtgacattggtga 3871411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 31430588 - 31430560
Alignment:
Q  108 ttgggtgacatagagttgggtgacattgg 136  Q
    |||||||||||||||||||||||||||||    
T  31430588 ttgggtgacatagagttgggtgacattgg 31430560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 15220956 - 15220919
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15220956 tagcatttgggtgacatagagttgggtgacattggtga 15220919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 44706925 - 44706892
Alignment:
Q  106 atttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||||    
T  44706925 atttgggtgacatagagttgggtgacattggtga 44706892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 48993910 - 48993947
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  48993910 tagcacttgggtgacatagagttgggtgacattggtga 48993947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 49444906 - 49444943
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  49444906 tagcacttgggtgacatagagttgggtgacattggtga 49444943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 29371368 - 29371404
Alignment:
Q  100 gatagcatttgggtgacatagagttgggtgacattgg 136  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29371368 gatagcatttgggtgacatagagttaggtgacattgg 29371404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 133
Target Start/End: Complemental strand, 26514276 - 26514245
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacat 133  Q
    ||||||||||||||||||||||||||||||||    
T  26514276 tagcatttgggtgacatagagttgggtgacat 26514245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 29179736 - 29179705
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  29179736 ttgggtgacatagagttgggtgacattggtga 29179705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 46931996 - 46932027
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  46931996 ttgggtgacatagagttgggtgacattggtga 46932027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 48994056 - 48994025
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  48994056 ttgggtgacatagagttgggtgacattggtga 48994025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 136
Target Start/End: Original strand, 34062215 - 34062245
Alignment:
Q  106 atttgggtgacatagagttgggtgacattgg 136  Q
    |||||||||||||||||||||||||||||||    
T  34062215 atttgggtgacatagagttgggtgacattgg 34062245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 138
Target Start/End: Complemental strand, 36290546 - 36290516
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtg 138  Q
    |||||||||||||||||||||||||||||||    
T  36290546 ttgggtgacatagagttgggtgacattggtg 36290516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 48823887 - 48823921
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattgg 136  Q
    ||||| |||||||||||||||||||||||||||||    
T  48823887 tagcacttgggtgacatagagttgggtgacattgg 48823921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 15220811 - 15220848
Alignment:
Q  100 gatagcatttgggtgacatagagttgggtgacattggt 137  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  15220811 gatagcacttgggtgacatggagttgggtgacattggt 15220848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 28395630 - 28395667
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  28395630 tagcatttgggtaacatagagttgagtgacattggtga 28395667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 29179590 - 29179627
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  29179590 tagcacttggatgacatagagttgggtgacattggtga 29179627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 34062345 - 34062312
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattg 135  Q
    |||||||||||| |||||||||||||||||||||    
T  34062345 tagcatttgggtaacatagagttgggtgacattg 34062312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 49445041 - 49445013
Alignment:
Q  108 ttgggtgacatagagttgggtgacattgg 136  Q
    |||||||||||||||||||||||||||||    
T  49445041 ttgggtgacatagagttgggtgacattgg 49445013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 5033306 - 5033269
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5033306 tagcacttgggtgacatagagttgggtgacattggtga 5033269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 33841584 - 33841621
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  33841584 tagcacttgggtgacatagagttgggtgacattggtga 33841621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 5033160 - 5033191
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  5033160 ttgggtgacatagagttgggtgacattggtga 5033191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 8243527 - 8243496
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  8243527 ttgggtgacatagagttgggtgacattggtga 8243496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 33841730 - 33841699
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  33841730 ttgggtgacatagagttgggtgacattggtga 33841699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 35441108 - 35441077
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  35441108 ttgggtgacatagagttgggtgacattggtga 35441077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 43844616 - 43844577
Alignment:
Q  100 gatagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  43844616 gatagcaattgggtgacatagagttggatgacattggtga 43844577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 5667090 - 5667127
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  5667090 tagcacttgggtgacatagagttggatgacattggtga 5667127  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 35440962 - 35440999
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  35440962 tagcacttgggtgacttagagttgggtgacattggtga 35440999  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 11017014 - 11016977
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  11017014 tagcacttgggtgacatagagttgggtgacattggtga 11016977  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 42628440 - 42628403
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  42628440 tagcacttgggtgacatagagttgggtgacattggtga 42628403  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 11016868 - 11016899
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  11016868 ttgggtgacatagagttgggtgacattggtga 11016899  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 34854834 - 34854803
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  34854834 ttgggtgacatagagttgggtgacattggtga 34854803  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 41018367 - 41018336
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  41018367 ttgggtgacatagagttgggtgacattggtga 41018336  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 45231989 - 45231958
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  45231989 ttgggtgacatagagttgggtgacattggtga 45231958  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 137
Target Start/End: Original strand, 4649327 - 4649357
Alignment:
Q  107 tttgggtgacatagagttgggtgacattggt 137  Q
    |||||||||||||||||||||||||||||||    
T  4649327 tttgggtgacatagagttgggtgacattggt 4649357  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 4290690 - 4290653
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  4290690 tagcacttgggtgacatacagttgggtgacattggtga 4290653  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 38975804 - 38975833
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggt 137  Q
    ||||||||||||||||||||||||||||||    
T  38975804 ttgggtgacatagagttgggtgacattggt 38975833  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 135
Target Start/End: Original strand, 42628301 - 42628330
Alignment:
Q  106 atttgggtgacatagagttgggtgacattg 135  Q
    ||||||||||||||||||||||||||||||    
T  42628301 atttgggtgacatagagttgggtgacattg 42628330  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 25001347 - 25001383
Alignment:
Q  100 gatagcatttgggtgacatagagttgggtgacattgg 136  Q
    |||||||||||||||| |||||||| |||||||||||    
T  25001347 gatagcatttgggtgaaatagagtttggtgacattgg 25001383  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 29053444 - 29053416
Alignment:
Q  108 ttgggtgacatagagttgggtgacattgg 136  Q
    |||||||||||||||||||||||||||||    
T  29053444 ttgggtgacatagagttgggtgacattgg 29053416  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 14892405 - 14892368
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14892405 tagcatttgggtgacatagagttggatgacattggtga 14892368  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 38933732 - 38933695
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  38933732 tagcacttgggtgacatagagttgggtgacattggtga 38933695  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 6217223 - 6217254
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  6217223 ttgggtgacatagagttgggtgacattggtga 6217254  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 14470583 - 14470622
Alignment:
Q  100 gatagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  14470583 gatagcacttgtgtgacatagagttgggtgacattggtga 14470622  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 16514423 - 16514454
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||||||||||||||||||||||||||    
T  16514423 ttgggtgacatagagttgggtgacattggtga 16514454  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 9172989 - 9173018
Alignment:
Q  108 ttgggtgacatagagttgggtgacattggt 137  Q
    ||||||||||||||||||||||||||||||    
T  9172989 ttgggtgacatagagttgggtgacattggt 9173018  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 9173122 - 9173089
Alignment:
Q  106 atttgggtgacatagagttgggtgacattggtga 139  Q
    |||| |||||||||||||||||||||||||||||    
T  9173122 atttaggtgacatagagttgggtgacattggtga 9173089  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 16514569 - 16514532
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  16514569 tagcacttgggtgacatagagttgggtgagattggtga 16514532  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 2893971 - 2893999
Alignment:
Q  108 ttgggtgacatagagttgggtgacattgg 136  Q
    |||||||||||||||||||||||||||||    
T  2893971 ttgggtgacatagagttgggtgacattgg 2893999  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 2894096 - 2894064
Alignment:
Q  105 catttgggtgacatagagttgggtgacattggt 137  Q
    |||||||||||||||||||||| ||||||||||    
T  2894096 catttgggtgacatagagttggatgacattggt 2894064  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 6217354 - 6217326
Alignment:
Q  108 ttgggtgacatagagttgggtgacattgg 136  Q
    |||||||||||||||||||||||||||||    
T  6217354 ttgggtgacatagagttgggtgacattgg 6217326  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 29508692 - 29508720
Alignment:
Q  111 ggtgacatagagttgggtgacattggtga 139  Q
    |||||||||||||||||||||||||||||    
T  29508692 ggtgacatagagttgggtgacattggtga 29508720  T

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Target: scaffold0180 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 135
Target Start/End: Original strand, 19113 - 19148
Alignment:
Q  100 gatagcatttgggtgacatagagttgggtgacattg 135  Q
    ||||||||||| ||||||||||||||||||||||||    
T  19113 gatagcatttgtgtgacatagagttgggtgacattg 19148  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 49696 - 49729
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattg 135  Q
    ||||| ||||||||||||||||||||||||||||    
T  49696 tagcacttgggtgacatagagttgggtgacattg 49729  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 13043445 - 13043478
Alignment:
Q  106 atttgggtgacatagagttgggtgacattggtga 139  Q
    |||||||||||||||| |||||||||||||||||    
T  13043445 atttgggtgacatagaattgggtgacattggtga 13043478  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 13043602 - 13043565
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  13043602 tagcatttgggtgacatagagttgagtgatattggtga 13043565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 24618594 - 24618631
Alignment:
Q  102 tagcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  24618594 tagcacttgagtgacatagagttgggtgacattggtga 24618631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 10521849 - 10521885
Alignment:
Q  100 gatagcatttgggtgacatagagttgggtgacattgg 136  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  10521849 gatagcacttgggtgacatagagtttggtgacattgg 10521885  T

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Target: scaffold0481 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 3020 - 2984
Alignment:
Q  103 agcatttgggtgacatagagttgggtgacattggtga 139  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  3020 agcatttggctgacatagagttgggtgacatcggtga 2984  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 63765 - 63793
Alignment:
Q  108 ttgggtgacatagagttgggtgacattgg 136  Q
    |||||||||||||||||||||||||||||    
T  63765 ttgggtgacatagagttgggtgacattgg 63793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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