View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_high_20 (Length: 366)
Name: NF17971_high_20
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 351
Target Start/End: Complemental strand, 29852277 - 29851934
Alignment:
| Q |
6 |
ggtagattattcttaatttaagttcaaagtggnnnnnnnctggattatttattacacaacaatttcttttttattacaacttggagcttggaaggttctt |
105 |
Q |
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| T |
29852277 |
ggtatattatgcttaatttaagttcaaagtggaaaaaaactggattatttattacacaacaatttcttttttattacaacttggagcttggaaggttctt |
29852178 |
T |
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| Q |
106 |
aactgttaggtagatagatacaaatatatacaaaatacaaaaataacaataacataccccactaatcaaagttgggtatagtacaagtaaaaggaggtag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29852177 |
aactgttaggtagatagatacaaatatatacaaaatacaaaaataacaataacataccccactaatcaaagttgggtatagtacaagtaaaaggaggtag |
29852078 |
T |
|
| Q |
206 |
aaaaacaatcaacatatatcaatcagtgtatatatttctttatcaaacagggtcttacattgagtgcagttatgtttctaatcagtgtcgtattttggaa |
305 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29852077 |
gaaaacaatcaac--atgtcaatcagtgtatatatttctttatcaaacagggtcttacattgagtgcagttatgtttctaatcagtgtcgtattttggaa |
29851980 |
T |
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| Q |
306 |
gttaatctaaattattgattatcaaaatcatttgcttataatatgt |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29851979 |
gttaatctaaattattgattatcaaaatcatttgcttataatatgt |
29851934 |
T |
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