View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_high_21 (Length: 349)
Name: NF17971_high_21
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 37158045 - 37157733
Alignment:
| Q |
19 |
ctcatcaggttatggaaactgtgtctattcttcacctgggtatgtgtcatatcataacattactaatttgccaaaatagaaagaagcttacaaatatttt |
118 |
Q |
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| T |
37158045 |
ctcatcaggttatggaaactgtgtctattcttcacctgggtatgtgtcatatcataacattactaatttgccaaaatagaaagaagcttacaaatatttt |
37157946 |
T |
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| Q |
119 |
attttaccattgcattaatttaataataacagcaatttattgttttatgttacagctctgttggttcttctgctccaccttcattgggaaagcataacaa |
218 |
Q |
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| T |
37157945 |
attttaccattgcattaatttaataataacagcaatttattgttttatgttacagctctgttggttcttctgctccaccttcattgggaaagcataacaa |
37157846 |
T |
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| Q |
219 |
aagtttagtgtggtcgaagctcatttctctgctattgttttcatactattggatgtgacaaatactatgttatggtcggtggacaaaaggaaaaaggaat |
318 |
Q |
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| T |
37157845 |
aagtttagtgtggttgaagctcatttctctgctattgttttcatactattggatgtgacaaatactatgttatggtcggtggacaaaaggaaaaaggaat |
37157746 |
T |
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| Q |
319 |
tagaggaatgtta |
331 |
Q |
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| T |
37157745 |
tagaggaatgtta |
37157733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 100 - 288
Target Start/End: Complemental strand, 7828937 - 7828754
Alignment:
| Q |
100 |
agaagcttacaaatattttattttaccattgcattaatttaataataacagcaatttattgttttatgttacagctctgttggttcttctgctccacctt |
199 |
Q |
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| T |
7828937 |
agaagcttacaaatactttattttaccattaca-----ttaataattacagcaatttattgttttatgttacagctttgttggttgttctgctccacctt |
7828843 |
T |
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| Q |
200 |
cattgggaaagcataacaaaagtttagtgtggtcgaagctcatttctctgctattgttttcatactattggatgtgacaaatactatgt |
288 |
Q |
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| T |
7828842 |
cattggaaaagaataacaaaagtttagcgtggttgaaacttacttctttgctattgttttcatactattggatgtgactaatactatgt |
7828754 |
T |
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