View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_high_23 (Length: 336)
Name: NF17971_high_23
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 49698838 - 49698538
Alignment:
| Q |
18 |
agatggttcttcgacggagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccggtgaggctgtacatgctgccatcatcgtg |
117 |
Q |
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| T |
49698838 |
agatggttcttcgacggagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccagtgaggctgtacatgctgccatcatcgtg |
49698739 |
T |
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| Q |
118 |
ttccgggagaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcattttt |
217 |
Q |
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| T |
49698738 |
ttccgggagaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggctttcatacatcattttt |
49698639 |
T |
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| Q |
218 |
gcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698638 |
gcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaactttgttcaatcat |
49698539 |
T |
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| Q |
318 |
t |
318 |
Q |
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| T |
49698538 |
t |
49698538 |
T |
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