View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_high_24 (Length: 333)
Name: NF17971_high_24
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 52105044 - 52105298
Alignment:
| Q |
7 |
ggagcacagaacaccgtcaaatacataagcatgccatgtttaaggtaaaaaatcaactactggaataaatatcctatatnnnnnnntggatttggtcccc |
106 |
Q |
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| T |
52105044 |
ggagcactgaacaccgtcaaatacataagcatgctatgtttaaggtaaaaaatcaacgactagaataaatatcctatataaaaaaatggatttggtcccc |
52105143 |
T |
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| Q |
107 |
aaagcaagccaagacaaaatagacattgtgtagtacataacataacatgtggtgtgggaatctacttttgcttttctttccctttgttccttacatttcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52105144 |
aaagcaagccaagacaaaatagacattgtgtagtacataacataacatgtggtgtgggaatctacttttgcttttctttccctttgttccttacatttcc |
52105243 |
T |
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| Q |
207 |
agcaaataggttgaaagaaaatcaactctagtttgtccaatgaaagctatgtttt |
261 |
Q |
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| T |
52105244 |
agcaaataggttgaaagaaaatcaactctagtttgtccaatgaaagctatgtttt |
52105298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 316
Target Start/End: Original strand, 52105322 - 52105350
Alignment:
| Q |
288 |
ggaacttgtagatatctacatcattggtt |
316 |
Q |
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| T |
52105322 |
ggaacttgtagatatctacatcattggtt |
52105350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 18128023 - 18128059
Alignment:
| Q |
183 |
tttccctttgttccttacatttccagcaaataggttg |
219 |
Q |
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| T |
18128023 |
tttctctttgttccttgcatttccagcaaataggttg |
18128059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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