View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17971_high_40 (Length: 241)

Name: NF17971_high_40
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17971_high_40
NF17971_high_40
[»] chr5 (22 HSPs)
chr5 (83-133)||(9123863-9123913)
chr5 (90-161)||(23118040-23118112)
chr5 (83-147)||(34206220-34206284)
chr5 (96-146)||(15105114-15105165)
chr5 (83-130)||(40056611-40056658)
chr5 (84-130)||(1642328-1642374)
chr5 (89-143)||(17861443-17861497)
chr5 (91-148)||(18981191-18981249)
chr5 (83-136)||(1669595-1669648)
chr5 (90-147)||(22498942-22498999)
chr5 (88-133)||(25589402-25589447)
chr5 (89-133)||(4763204-4763248)
chr5 (84-144)||(11720888-11720948)
chr5 (90-130)||(18278280-18278320)
chr5 (90-130)||(18589888-18589928)
chr5 (90-130)||(26034629-26034669)
chr5 (89-133)||(27651548-27651592)
chr5 (90-130)||(30893933-30893973)
chr5 (90-130)||(34702490-34702530)
chr5 (90-130)||(35109400-35109440)
chr5 (89-133)||(35413310-35413353)
chr5 (90-130)||(39917905-39917945)
[»] chr8 (11 HSPs)
chr8 (53-130)||(10967176-10967252)
chr8 (84-133)||(43073454-43073503)
chr8 (80-147)||(30623283-30623351)
chr8 (90-133)||(3650520-3650563)
chr8 (83-130)||(32878654-32878701)
chr8 (90-133)||(36919311-36919354)
chr8 (87-137)||(27129079-27129129)
chr8 (84-148)||(7679896-7679961)
chr8 (83-136)||(42367722-42367775)
chr8 (82-130)||(19778057-19778105)
chr8 (90-130)||(24199826-24199866)
[»] chr4 (23 HSPs)
chr4 (89-136)||(34968341-34968388)
chr4 (81-130)||(19908683-19908732)
chr4 (84-132)||(13984661-13984709)
chr4 (89-133)||(36199318-36199362)
chr4 (90-130)||(45970728-45970768)
chr4 (79-130)||(3936616-3936667)
chr4 (83-149)||(21266883-21266950)
chr4 (82-129)||(31604315-31604362)
chr4 (90-133)||(32923248-32923291)
chr4 (90-137)||(34595950-34595997)
chr4 (90-133)||(53530009-53530052)
chr4 (91-148)||(45029607-45029665)
chr4 (95-137)||(46409495-46409537)
chr4 (84-137)||(44909818-44909871)
chr4 (89-160)||(470308-470380)
chr4 (90-130)||(3299115-3299155)
chr4 (90-130)||(7922271-7922311)
chr4 (90-130)||(29908056-29908096)
chr4 (93-129)||(34960179-34960215)
chr4 (90-130)||(40070989-40071029)
chr4 (90-130)||(42316845-42316885)
chr4 (86-130)||(44689488-44689532)
chr4 (89-133)||(52936640-52936684)
[»] chr3 (27 HSPs)
chr3 (83-150)||(22462305-22462372)
chr3 (90-148)||(7868722-7868780)
chr3 (90-149)||(22486683-22486743)
chr3 (76-144)||(42698694-42698762)
chr3 (78-130)||(51882221-51882273)
chr3 (83-130)||(13800660-13800707)
chr3 (83-130)||(17588355-17588402)
chr3 (90-148)||(48376835-48376894)
chr3 (83-130)||(53681898-53681945)
chr3 (83-133)||(2563922-2563972)
chr3 (90-136)||(8942017-8942063)
chr3 (90-147)||(19939044-19939102)
chr3 (83-129)||(38573595-38573641)
chr3 (83-133)||(38898227-38898277)
chr3 (91-144)||(52543698-52543752)
chr3 (81-130)||(1757690-1757739)
chr3 (84-148)||(21513282-21513347)
chr3 (91-147)||(21914074-21914131)
chr3 (90-147)||(28595789-28595846)
chr3 (95-148)||(49223029-49223082)
chr3 (90-150)||(53633617-53633678)
chr3 (90-130)||(5941315-5941355)
chr3 (89-133)||(22843463-22843507)
chr3 (90-130)||(23653243-23653283)
chr3 (89-133)||(25289331-25289375)
chr3 (90-134)||(32632321-32632365)
chr3 (90-130)||(33223868-33223908)
[»] chr2 (21 HSPs)
chr2 (83-144)||(41682394-41682455)
chr2 (84-147)||(35727431-35727495)
chr2 (182-234)||(6377674-6377728)
chr2 (79-130)||(16204838-16204889)
chr2 (89-130)||(23250341-23250382)
chr2 (90-130)||(37320538-37320578)
chr2 (93-148)||(8727709-8727764)
chr2 (84-135)||(10058865-10058916)
chr2 (90-133)||(27412854-27412897)
chr2 (89-130)||(4897542-4897583)
chr2 (89-130)||(4944936-4944977)
chr2 (91-148)||(10991543-10991600)
chr2 (89-130)||(18324915-18324956)
chr2 (89-130)||(27314866-27314907)
chr2 (90-130)||(5676739-5676779)
chr2 (89-133)||(13000684-13000728)
chr2 (90-130)||(21497667-21497707)
chr2 (100-147)||(25274832-25274880)
chr2 (83-131)||(28644518-28644566)
chr2 (90-130)||(39088820-39088860)
chr2 (90-130)||(42475131-42475171)
[»] chr7 (16 HSPs)
chr7 (83-133)||(23221385-23221435)
chr7 (84-147)||(38553812-38553876)
chr7 (83-130)||(24991774-24991821)
chr7 (90-129)||(25251510-25251549)
chr7 (82-132)||(8318833-8318883)
chr7 (91-133)||(15015242-15015284)
chr7 (90-144)||(16355513-16355567)
chr7 (95-129)||(23158458-23158492)
chr7 (114-147)||(21411543-21411576)
chr7 (90-146)||(24839488-24839545)
chr7 (81-130)||(39280839-39280888)
chr7 (90-130)||(8879768-8879808)
chr7 (90-130)||(28012635-28012675)
chr7 (90-130)||(34934301-34934341)
chr7 (84-151)||(37230027-37230095)
chr7 (90-130)||(48007568-48007608)
[»] chr1 (20 HSPs)
chr1 (88-150)||(41926820-41926882)
chr1 (83-147)||(29798119-29798184)
chr1 (91-147)||(34083338-34083395)
chr1 (90-130)||(32950782-32950822)
chr1 (90-133)||(3573342-3573385)
chr1 (93-147)||(21015965-21016020)
chr1 (90-133)||(50849091-50849134)
chr1 (91-150)||(13261172-13261233)
chr1 (88-130)||(33229703-33229745)
chr1 (90-131)||(6519900-6519941)
chr1 (90-131)||(15729430-15729471)
chr1 (89-130)||(28039881-28039922)
chr1 (89-130)||(28832192-28832233)
chr1 (84-133)||(33153898-33153947)
chr1 (93-137)||(1408438-1408482)
chr1 (101-148)||(9413809-9413857)
chr1 (89-148)||(11410626-11410686)
chr1 (115-150)||(32874389-32874425)
chr1 (93-129)||(39949815-39949851)
chr1 (90-130)||(49875620-49875660)
[»] scaffold0118 (1 HSPs)
scaffold0118 (96-150)||(44424-44479)
[»] chr6 (11 HSPs)
chr6 (90-133)||(6470634-6470677)
chr6 (83-130)||(8381215-8381262)
chr6 (82-133)||(9987073-9987124)
chr6 (90-137)||(24438296-24438343)
chr6 (95-144)||(32409185-32409234)
chr6 (90-130)||(331907-331947)
chr6 (81-133)||(2105896-2105948)
chr6 (89-133)||(2617223-2617267)
chr6 (93-133)||(17420736-17420776)
chr6 (90-130)||(28951399-28951439)
chr6 (90-130)||(29335596-29335636)
[»] scaffold0238 (1 HSPs)
scaffold0238 (85-130)||(25384-25429)
[»] scaffold0126 (1 HSPs)
scaffold0126 (90-130)||(34909-34949)


Alignment Details
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 9123913 - 9123863
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  9123913 tgtccctgtgagcttaactcagttggtaaagacaatgcataatatatgtaa 9123863  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 23118112 - 23118040
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaag-ttggggttcgaattctggataccacc 161  Q
    |||||||||||||||| | |||  |||||||||||||||||||| | |||||||||||| |||||| ||||||    
T  23118112 gtgagcttaactcagttgataaggacaatgcataatatatgtaaggtttggggttcgaactctggacaccacc 23118040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 34206220 - 34206284
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttcgaa 147  Q
    |||||| ||||| |||||||||| |||||| ||||||||||||||||| || ||| ||| |||||    
T  34206220 tgtccccgtgagtttaactcagttggtaaagacaatgcataatatatgcaaggttcggggtcgaa 34206284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 15105165 - 15105114
Alignment:
Q  96 ttaactcagtgggtaaaaacaatgcataatatatgtaaag-ttggggttcga 146  Q
    |||||||||| ||||||||||||||||||||||| ||| | |||||||||||    
T  15105165 ttaactcagttggtaaaaacaatgcataatatatataaggtttggggttcga 15105114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 40056658 - 40056611
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||| ||||||||||||||||| |||||  |||||||||||||||||    
T  40056658 tgtccttgtgagcttaactcagttggtaaggacaatgcataatatatg 40056611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 1642328 - 1642374
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||| ||||||| || |||||| ||||||||||||||||||||||||    
T  1642328 gtccttgtgagcatagctcagttggtaaaaacaatgcataatatatg 1642374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 17861497 - 17861443
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggtt 143  Q
    |||||||||| || ||| |||||| |||||| ||||||||||||||||| |||||    
T  17861497 tgtgagcttagcttagttggtaaagacaatgtataatatatgtaaagtttgggtt 17861443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 18981249 - 18981191
Alignment:
Q  91 tgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagtt-ggggttcgaat 148  Q
    |||||||||||||   ||||| ||||||||||||||||||||| ||| |||||||||||    
T  18981249 tgagcttaactcaaatggtaagaacaatgcataatatatgtaaggttcggggttcgaat 18981191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 1669648 - 1669595
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt 136  Q
    |||||| |||| |||| |||||| ||||| |||||||||||||||||| |||||    
T  1669648 tgtccccgtgaacttagctcagttggtaagaacaatgcataatatatgcaaagt 1669595  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 22498942 - 22498999
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttcgaa 147  Q
    |||||||||||||||| |||||  ||||||||||||||||| || ||  |||||||||    
T  22498942 gtgagcttaactcagttggtaaggacaatgcataatatatgcaaggtctgggttcgaa 22498999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 25589447 - 25589402
Alignment:
Q  88 ctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||| |||| ||||| |||||||||| ||||||||||||||||    
T  25589447 ctgtgagtttaattcagttggtaaaaacactgcataatatatgtaa 25589402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 4763248 - 4763204
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||| |||||||| | |||||| ||||||||||||||||||||    
T  4763248 tgtgagtttaactcaattggtaaagacaatgcataatatatgtaa 4763204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 11720888 - 11720948
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttc 144  Q
    |||| ||||||||||||||||| ||||   ||||||||||||||||| || || |||||||    
T  11720888 gtccttgtgagcttaactcagttggtagggacaatgcataatatatgcaaggtcggggttc 11720948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 18278320 - 18278280
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  18278320 gtgagtttaactcagttggtaagaacaatgcataatatatg 18278280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 18589928 - 18589888
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  18589928 gtgagcttaactcagttggtatgaacaatgcataatatatg 18589888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 26034669 - 26034629
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  26034669 gtgagcttaactcagttggtatgaacaatgcataatatatg 26034629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 27651592 - 27651548
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||||||||| ||| |||||  ||||||||||||||||||||    
T  27651592 tgtgagcttaacttagttggtaaggacaatgcataatatatgtaa 27651548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 30893933 - 30893973
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  30893933 gtgagcttaactcagtttgtaaagacaatgcataatatatg 30893973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 34702490 - 34702530
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  34702490 gtgagcttaactcagttggtaaggacaatgcataatatatg 34702530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 35109400 - 35109440
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||| ||||| |||||||||||    
T  35109400 gtgagcttaactcagttggtaaagacaatacataatatatg 35109440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 35413353 - 35413310
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||||||||||||| |||| || |||||||||||||||||||    
T  35413353 tgtgagcttaactcagttggtagaa-caatgcataatatatgtaa 35413310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 39917945 - 39917905
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  39917945 gtgagtttaactcagttggtaagaacaatgcataatatatg 39917905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 10967176 - 10967252
Alignment:
Q  53 acttgaagtcgtattaaaacaacgaatgagtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||||||||||||  ||||||||| ||||| |||||||| | | ||| ||||||||||||||||||    
T  10967176 acttgaagtcgtattaaaacaacgac-gagtgtccccgtgagtttaactcaattgataagaacaatgcataatatatg 10967252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 43073503 - 43073454
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||| || ||||||||||||| |||||||||||||||||||||||||||    
T  43073503 gtccccgtaagcttaactcagttggtaaaaacaatgcataatatatgtaa 43073454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 30623283 - 30623351
Alignment:
Q  80 gagtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcgaa 147  Q
    ||||||||||||||||||| |||||| |||||  ||||||||||||||||| || || |||||||||||    
T  30623283 gagtgtccctgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 30623351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 3650520 - 3650563
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||    
T  3650520 gtgagcttaactcagttggtagaaaaaatgcataatatatgtaa 3650563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 32878654 - 32878701
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||| ||||||||| |||||| ||||| ||||||||||||||||||    
T  32878654 tgtccccgtgagcttagctcagttggtaagaacaatgcataatatatg 32878701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 36919311 - 36919354
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||    
T  36919311 gtgagcttaactcagttggtaagaacaatgtataatatatgtaa 36919354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 27129079 - 27129129
Alignment:
Q  87 cctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagtt 137  Q
    |||||||||||| |||||| ||||| |||| ||||||||||||| ||||||    
T  27129079 cctgtgagcttacctcagttggtaagaacattgcataatatatgcaaagtt 27129129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 7679896 - 7679961
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagtt-ggggttcgaat 148  Q
    ||||| || ||||||||||||| || ||| ||||||||||||||||| || ||| |||||||||||    
T  7679896 gtccccgtaagcttaactcagttggcaaagacaatgcataatatatgcaaggttcggggttcgaat 7679961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 42367722 - 42367775
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt 136  Q
    |||||| ||||||||| |||||| | ||| |||||||||||||||||| |||||    
T  42367722 tgtccccgtgagcttagctcagttgataagaacaatgcataatatatgaaaagt 42367775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 19778057 - 19778105
Alignment:
Q  82 gtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||| ||||||||| |||||| |||||  |||||||||||||||||    
T  19778057 gtgtccccgtgagcttagctcagttggtaaggacaatgcataatatatg 19778105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 24199866 - 24199826
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||| |||||| ||||||||||    
T  24199866 gtgagcttaactcagttggtaaacacaatgtataatatatg 24199826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 34968341 - 34968388
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt 136  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  34968341 tgtgagcttaactcagttggtaaaaataatgcataatatatgtaaagt 34968388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 19908683 - 19908732
Alignment:
Q  81 agtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||| ||||||||||||||||||| |||||  |||||||||||||||||    
T  19908683 agtgttcctgtgagcttaactcagttggtaaggacaatgcataatatatg 19908732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 13984709 - 13984661
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgta 132  Q
    ||||| |||||||||||||||| ||||  ||||||||||||||||||||    
T  13984709 gtccccgtgagcttaactcagttggtaggaacaatgcataatatatgta 13984661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 36199362 - 36199318
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||||||  || ||||||||||||||||||||||||||||||    
T  36199362 tgtgagcttagttcggtgggtaaaaacaatgcataatatatgtaa 36199318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 45970768 - 45970728
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  45970768 gtgagcttaactcagttggtagaaacaatgcataatatatg 45970728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 3936616 - 3936667
Alignment:
Q  79 tgagtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||| ||||||||||||||| |||||| ||||  ||||||||||||||||||    
T  3936616 tgagagtccctgtgagcttagctcagttggtatgaacaatgcataatatatg 3936667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 21266950 - 21266883
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaag-ttggggttcgaatt 149  Q
    |||||| ||||||||| |||| | | |||| |||||||||||||||||||| | ||||||||||||||    
T  21266950 tgtccccgtgagcttagctcaattgttaaagacaatgcataatatatgtaaggtttggggttcgaatt 21266883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 31604362 - 31604315
Alignment:
Q  82 gtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatat 129  Q
    ||||||| |||||||||||||||| ||||| |||||||||||| ||||    
T  31604362 gtgtccccgtgagcttaactcagttggtaagaacaatgcataaaatat 31604315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 32923291 - 32923248
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||||||||||| ||||  |||||||||||||||||||||    
T  32923291 gtgagcttaactcagttggtatgaacaatgcataatatatgtaa 32923248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 34595997 - 34595950
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagtt 137  Q
    ||||| |||||||||| |||||  ||||||||||||||||||||||||    
T  34595997 gtgagtttaactcagttggtaaggacaatgcataatatatgtaaagtt 34595950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 53530009 - 53530052
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||||||||||||   |||||||||||||||||||||||||    
T  53530009 gtgagcttaactcagttaataaaaacaatgcataatatatgtaa 53530052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 45029665 - 45029607
Alignment:
Q  91 tgagcttaactcagtgggtaaaaacaatgcataatatatgtaaag-ttggggttcgaat 148  Q
    ||||||||||||| | |||||  |||||||||||||||||||| | |||||||||||||    
T  45029665 tgagcttaactcatttggtaaggacaatgcataatatatgtaaggtttggggttcgaat 45029607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 46409537 - 46409495
Alignment:
Q  95 cttaactcagtgggtaaaaacaatgcataatatatgtaaagtt 137  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||    
T  46409537 cttaactcagttggtaaagacaatgcataatatatgcaaagtt 46409495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 44909818 - 44909871
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagtt 137  Q
    |||| ||| ||||||||||||| |||||| |||||||||| |||||| ||||||    
T  44909818 gtccgtgtaagcttaactcagttggtaaagacaatgcatagtatatgcaaagtt 44909871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 470380 - 470308
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcgaattctggataccac 160  Q
    |||||||||| |||||| | |||| | |||| |||||||||||||||| || |||||||||||| || |||||    
T  470380 tgtgagcttagctcagttgataaagataatgtataatatatgtaaagtatgaggttcgaattctagacaccac 470308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 3299155 - 3299115
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||| |||||||||| ||| ||||||||||||||||||||    
T  3299155 gtgagtttaactcagttggttaaaacaatgcataatatatg 3299115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 7922311 - 7922271
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||| |||||| |||||| |||||||||||||||||    
T  7922311 gtgagcttatctcagttggtaaagacaatgcataatatatg 7922271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 29908056 - 29908096
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  29908056 gtgagcttaactcagttggtaaggacaatgcataatatatg 29908096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 34960215 - 34960179
Alignment:
Q  93 agcttaactcagtgggtaaaaacaatgcataatatat 129  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  34960215 agcttaactcagttggtataaacaatgcataatatat 34960179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 40071029 - 40070989
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  40071029 gtgagcttaactcagttggtatgaacaatgcataatatatg 40070989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 42316885 - 42316845
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||| ||| |||||||||||||    
T  42316885 gtgagcttaactcagttggtaaagacagtgcataatatatg 42316845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 44689488 - 44689532
Alignment:
Q  86 ccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||| ||| ||||||||||| ||||| ||||||||||||||||||    
T  44689488 ccctatgaacttaactcagttggtaagaacaatgcataatatatg 44689532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 52936640 - 52936684
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||||||||||||| | || |||||||| |||||||||||||    
T  52936640 tgtgagcttaactcagttgatagaaacaatgtataatatatgtaa 52936684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 22462305 - 22462372
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttcgaattc 150  Q
    |||||| |||||||||||||||| | |||  |||||||||||||||||||| ||| ||||||||||||    
T  22462305 tgtccccgtgagcttaactcagttgataaggacaatgcataatatatgtaatgtttgggttcgaattc 22462372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 7868722 - 7868780
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttcgaat 148  Q
    ||||||||| |||||| ||||| |||||||||||||||||| |||||| ||||||||||    
T  7868722 gtgagcttagctcagttggtaagaacaatgcataatatatgcaaagttcgggttcgaat 7868780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 22486683 - 22486743
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa-agttggggttcgaatt 149  Q
    |||||||||||||||| ||||| |||||||||||||||||| || | ||||||||||||||    
T  22486683 gtgagcttaactcagttggtaagaacaatgcataatatatgcaagatttggggttcgaatt 22486743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 42698694 - 42698762
Alignment:
Q  76 gaatgagtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttc 144  Q
    ||||||| ||||| |||||| || || ||| |||| |||||||||||| ||||||||||||| ||||||    
T  42698694 gaatgagagtccccgtgagcgtagcttagttggtataaacaatgcatagtatatgtaaagttcgggttc 42698762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 51882273 - 51882221
Alignment:
Q  78 atgagtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  51882273 atgagtgtccccgtgagcttaactcagttggtatggacaatgcataatatatg 51882221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 13800660 - 13800707
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||| |||||||||| |||||| ||||| ||||||||||||||||||    
T  13800660 tgtccatgtgagcttagctcagttggtaagaacaatgcataatatatg 13800707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 17588355 - 17588402
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||| |||||||||||||||| |||||  |||||||||||||||||    
T  17588355 tgtccccgtgagcttaactcagttggtaaggacaatgcataatatatg 17588402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 48376835 - 48376894
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaag-ttggggttcgaat 148  Q
    ||||||||| |||||| |||||| | |||||||||||||||||| | |||||||||||||    
T  48376835 gtgagcttagctcagttggtaaagataatgcataatatatgtaaggtttggggttcgaat 48376894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 53681945 - 53681898
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||| ||||||||| |||||| ||||| ||||||||||||||||||    
T  53681945 tgtccccgtgagcttacctcagttggtaagaacaatgcataatatatg 53681898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 2563922 - 2563972
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||| |||||||||||||||| | |||||| |||| |||||||||||||    
T  2563922 tgtccccgtgagcttaactcagttgataaaaataatgaataatatatgtaa 2563972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 8942017 - 8942063
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt 136  Q
    |||||||||||||||| ||||  |||||||||||||||||| |||||    
T  8942017 gtgagcttaactcagttggtatgaacaatgcataatatatgcaaagt 8942063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 19939102 - 19939044
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcgaa 147  Q
    ||||| |||||||||| ||||| |||||||||||||||||| || || |||||||||||    
T  19939102 gtgagattaactcagttggtaagaacaatgcataatatatgaaaggtctggggttcgaa 19939044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 38573641 - 38573595
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatat 129  Q
    |||| |||||||||||||||||| | ||| |||||||||||||||||    
T  38573641 tgtcactgtgagcttaactcagttgataagaacaatgcataatatat 38573595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 38898277 - 38898227
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||||||||||| |||||| |||||  |||||| |||||||||||||    
T  38898277 tgtccctgtgagcttatctcagttggtaaggacaatgtataatatatgtaa 38898227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 52543752 - 52543698
Alignment:
Q  91 tgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttc 144  Q
    ||||||||||| ||| ||||  |||||||||||||||||||||||| ||||||||    
T  52543752 tgagcttaacttagttggtaggaacaatgcataatatatgtaaagtgtggggttc 52543698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 1757739 - 1757690
Alignment:
Q  81 agtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||  |||||||||||||||| ||||  ||||||||||||||||||    
T  1757739 agtgtcctcgtgagcttaactcagttggtaggaacaatgcataatatatg 1757690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 21513282 - 21513347
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcgaat 148  Q
    ||||||||||||||| |||||| |||||  |||||||||||| |||| || || ||||||||||||    
T  21513282 gtccctgtgagcttagctcagttggtaaggacaatgcataatttatgcaaggtctggggttcgaat 21513347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 21914131 - 21914074
Alignment:
Q  91 tgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcgaa 147  Q
    ||||||||||||||| |||||  ||||||||||||||||| || || |||||||||||    
T  21914131 tgagcttaactcagttggtaaggacaatgcataatatatgcaaggtatggggttcgaa 21914074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 28595789 - 28595846
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttcgaa 147  Q
    |||| ||||||||| | |||||| ||||||||||||||||  |||||| |||||||||    
T  28595789 gtgaacttaactcaattggtaaagacaatgcataatatatacaaagttcgggttcgaa 28595846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 49223082 - 49223029
Alignment:
Q  95 cttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttcgaat 148  Q
    ||||| ||||| | |||||| ||||||||||||||| || ||||||||||||||    
T  49223082 cttaattcagttgataaaaataatgcataatatatgcaaggttggggttcgaat 49223029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 53633678 - 53633617
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcgaattc 150  Q
    |||||||||||||||| |||||  | |||||||||||||||||| ||  |||||||||||||    
T  53633678 gtgagcttaactcagttggtaaggataatgcataatatatgtaaggtccggggttcgaattc 53633617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 5941355 - 5941315
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  5941355 gtgagcttaactcagttggtatgaacaatgcataatatatg 5941315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 22843463 - 22843507
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||||| ||||||  ||||| ||||||||||||||||||||    
T  22843463 tgtgagcttagctcagttagtaaagacaatgcataatatatgtaa 22843507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 23653283 - 23653243
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| ||||| |||| |||||||||||||    
T  23653283 gtgagcttaactcagttggtaagaacattgcataatatatg 23653243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 25289375 - 25289331
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||| |||| |||||| ||||||||||||| |||||||||||||    
T  25289375 tgtgaacttagctcagttggtaaaaacaatgtataatatatgtaa 25289331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 32632321 - 32632365
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaa 134  Q
    ||||||||  |||||| |||| |||||||||||||||||||||||    
T  32632321 gtgagctttgctcagttggtataaacaatgcataatatatgtaaa 32632365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 33223868 - 33223908
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||| |||||| |||| |||||||||||||||||||    
T  33223868 gtgagcttagctcagttggtagaaacaatgcataatatatg 33223908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 41682455 - 41682394
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttc 144  Q
    ||||| ||||||||||||||||| |||| ||| |||||||||||||||||| ||| ||||||    
T  41682455 tgtccttgtgagcttaactcagttggtataaataatgcataatatatgtaaggttagggttc 41682394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 35727431 - 35727495
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaag-ttggggttcgaa 147  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||| || | ||||||||||||    
T  35727431 gtccccgtgagcttaactcagttggtaagaacaatgcataatatatgcaaggtttggggttcgaa 35727495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 6377728 - 6377674
Alignment:
Q  182 tcaaaataaagaaatggacata--gagattaggtttacccaaaaacattatgaag 234  Q
    ||||||||||||||||||||||  ||||||||||||| |||| ||||||||||||    
T  6377728 tcaaaataaagaaatggacatatagagattaggtttagccaataacattatgaag 6377674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 16204889 - 16204838
Alignment:
Q  79 tgagtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||||||||||||||||| | |||  |||||||||||||||||    
T  16204889 tgagtgtccctgtgagcttaactcagttgataaggacaatgcataatatatg 16204838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 23250382 - 23250341
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  23250382 tgtgagcttaactcagttggtaagaacaatgcataatatatg 23250341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 37320578 - 37320538
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  37320578 gtgagcttaactcagttggtaaagacaatgcataatatatg 37320538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 8727764 - 8727709
Alignment:
Q  93 agcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttcgaat 148  Q
    |||||| ||||||  ||| |||||||||||||||||||||||||  ||||||||||    
T  8727764 agcttagctcagttagtagaaacaatgcataatatatgtaaagtctgggttcgaat 8727709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 10058865 - 10058916
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaag 135  Q
    |||||||||||||||||||| | |||| | ||||||||||||||||| ||||    
T  10058865 gtccctgtgagcttaactcaattggtagagacaatgcataatatatgcaaag 10058916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 27412897 - 27412854
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||||||||||| |||| | ||||||||||||||||||||    
T  27412897 gtgagcttaactcagttggtagagacaatgcataatatatgtaa 27412854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 4897542 - 4897583
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||||||| |||||  |||||||||||||||||    
T  4897542 tgtgagcttaactcagttggtaaggacaatgcataatatatg 4897583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 4944936 - 4944977
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||||||| |||||  |||||||||||||||||    
T  4944936 tgtgagcttaactcagttggtaaggacaatgcataatatatg 4944977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 10991543 - 10991600
Alignment:
Q  91 tgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttcgaat 148  Q
    ||||||||||||||| |||||  ||||| |||||||||||||| ||  ||||||||||    
T  10991543 tgagcttaactcagttggtaaggacaatacataatatatgtaaggtccgggttcgaat 10991600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 18324956 - 18324915
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||||||| |||||  |||||||||||||||||    
T  18324956 tgtgagcttaactcagttggtaaggacaatgcataatatatg 18324915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 27314866 - 27314907
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||||||| ||||| |||||||||||| |||||    
T  27314866 tgtgagcttaactcagttggtaagaacaatgcataaaatatg 27314907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 5676739 - 5676779
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  5676739 gtgagcttaactcagttggtaatgacaatgcataatatatg 5676779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 13000684 - 13000728
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||||| |||||| |||||| | ||||||||||||||||||    
T  13000684 tgtgagcttagctcagttggtaaagataatgcataatatatgtaa 13000728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 21497667 - 21497707
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||| || ||||| ||||||||||||||||||    
T  21497667 gtgagcttaactcggttggtaagaacaatgcataatatatg 21497707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 25274880 - 25274832
Alignment:
Q  100 ctcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcgaa 147  Q
    |||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  25274880 ctcagttggtaagaacaatgcataatatatgtaaggtctggggttcgaa 25274832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 28644518 - 28644566
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgt 131  Q
    ||||| ||||||||||||||||| ||||   ||||||||||||||||||    
T  28644518 tgtccttgtgagcttaactcagttggtagggacaatgcataatatatgt 28644566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 39088860 - 39088820
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||| ||||||||||| |||||| |||||||||||||||||    
T  39088860 gtgaacttaactcagttggtaaagacaatgcataatatatg 39088820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 42475171 - 42475131
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||| ||||||||||||| |||||    
T  42475171 gtgagcttaactcagttggtataaacaatgcataaaatatg 42475131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 23221385 - 23221435
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||| |||||||||||||||||| |||| | ||||||||||||||||||||    
T  23221385 tgtcactgtgagcttaactcagttggtagagacaatgcataatatatgtaa 23221435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 38553812 - 38553876
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaag-ttggggttcgaa 147  Q
    ||||| |||| |||| |||||| ||||| ||||||||||||||||||||| | ||||||||||||    
T  38553812 gtccccgtgaacttagctcagttggtaagaacaatgcataatatatgtaaggtttggggttcgaa 38553876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 24991774 - 24991821
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||| |||||  |||||||||||||||||    
T  24991774 tgtccctgtgagcttagctcagttggtaaggacaatgcataatatatg 24991821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 25251510 - 25251549
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatat 129  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  25251510 gtgagcttaactcagttggtataaacaatgcataatatat 25251549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 8318833 - 8318883
Alignment:
Q  82 gtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgta 132  Q
    ||||| |||||||||||||||||| | || ||||||||||||| |||||||    
T  8318833 gtgtctctgtgagcttaactcagttgatagaaacaatgcataacatatgta 8318883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 15015242 - 15015284
Alignment:
Q  91 tgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||||||||||| | ||| |||||||||||||||||||||    
T  15015242 tgagcttaactcagttgataagaacaatgcataatatatgtaa 15015284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 16355513 - 16355567
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttc 144  Q
    |||||||||||||||| |||| | ||| || ||||||||||||| ||||||||||    
T  16355513 gtgagcttaactcagttggtagagacattgtataatatatgtaaggttggggttc 16355567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 23158458 - 23158492
Alignment:
Q  95 cttaactcagtgggtaaaaacaatgcataatatat 129  Q
    ||||||||||| |||||||||||||||||||||||    
T  23158458 cttaactcagttggtaaaaacaatgcataatatat 23158492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 21411543 - 21411576
Alignment:
Q  114 acaatgcataatatatgtaaagttggggttcgaa 147  Q
    |||||||||||||||||||||||| |||||||||    
T  21411543 acaatgcataatatatgtaaagttcgggttcgaa 21411576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 24839488 - 24839545
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcga 146  Q
    |||||||||||||||| |||| | ||||||||||| |||||||| || ||||||||||    
T  24839488 gtgagcttaactcagttggtatagacaatgcataaaatatgtaaggtctggggttcga 24839545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 39280888 - 39280839
Alignment:
Q  81 agtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||| |||| |||| |||||| ||||| ||||||||||||||||||    
T  39280888 agtgtccccgtgaacttagctcagttggtaagaacaatgcataatatatg 39280839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 8879808 - 8879768
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||| | |||||||||||||||||    
T  8879808 gtgagcttaactcagttggtatagacaatgcataatatatg 8879768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 28012675 - 28012635
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  28012675 gtgagcttaactcagttggtaaggacaatgcataatatatg 28012635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 34934341 - 34934301
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||| | |||| |||||||||||||||||||    
T  34934341 gtgagcttaactcaattggtataaacaatgcataatatatg 34934301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 37230095 - 37230027
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcgaattct 151  Q
    |||| ||||||||||||||||| |||||  | ||||||||||||||| || || |||||||| ||||||    
T  37230095 gtccatgtgagcttaactcagttggtaaggaaaatgcataatatatgcaaggtctggggttcaaattct 37230027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 48007608 - 48007568
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  48007608 gtgagcttaactcagttggtaatgacaatgcataatatatg 48007568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 41926820 - 41926882
Alignment:
Q  88 ctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttcgaattc 150  Q
    ||||||||||| |||||| |||||  |||||||||||||||||||| ||  ||||||||||||    
T  41926820 ctgtgagcttagctcagttggtaaggacaatgcataatatatgtaaggtccgggttcgaattc 41926882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 29798184 - 29798119
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcgaa 147  Q
    |||||||||||| ||| |||||| | ||| ||||||||||||||||||||| || |||||||||||    
T  29798184 tgtccctgtgagattagctcagtcgataagaacaatgcataatatatgtaaggtctggggttcgaa 29798119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 34083338 - 34083395
Alignment:
Q  91 tgagcttaactcagtgggtaaaaacaatgcataatatatgtaaag-ttggggttcgaa 147  Q
    ||||||||||||||  ||||| ||||||||||||||||||||| | ||||||||||||    
T  34083338 tgagcttaactcagatggtaagaacaatgcataatatatgtaaggtttggggttcgaa 34083395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 32950822 - 32950782
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  32950822 gtgagcttaactcagttggtataaacaatgcataatatatg 32950782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 3573385 - 3573342
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||||||||||| ||||  |||||||||||||||||||||    
T  3573385 gtgagcttaactcagttggtaggaacaatgcataatatatgtaa 3573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 21015965 - 21016020
Alignment:
Q  93 agcttaactcagtgggtaaaaacaatgcataatatatgtaaagtt-ggggttcgaa 147  Q
    |||||| |||||| ||||| ||||||||||||||||||||| ||| ||||||||||    
T  21015965 agcttagctcagttggtaagaacaatgcataatatatgtaaggttcggggttcgaa 21016020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 50849134 - 50849091
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||||||||||| |||||  ||||||||||||||||||||    
T  50849134 gtgagcttaactcagttggtaatgacaatgcataatatatgtaa 50849091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 13261172 - 13261233
Alignment:
Q  91 tgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagtt--ggggttcgaattc 150  Q
    |||| |||||||||| |||||| |||||| ||||||||||||| |||  |||||||||||||    
T  13261172 tgagtttaactcagttggtaaagacaatgtataatatatgtaaggtttgggggttcgaattc 13261233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 33229745 - 33229703
Alignment:
Q  88 ctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||||| ||||  ||||||||||||||||||    
T  33229745 ctgtgagcttaactcagttggtaggaacaatgcataatatatg 33229703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 6519941 - 6519900
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgt 131  Q
    ||||||||||| |||| ||||| |||||||||||||||||||    
T  6519941 gtgagcttaacgcagttggtaagaacaatgcataatatatgt 6519900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 15729430 - 15729471
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgt 131  Q
    |||||||||||||||| |||| | ||||||||||||||||||    
T  15729430 gtgagcttaactcagttggtagagacaatgcataatatatgt 15729471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 28039922 - 28039881
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||||||| |||||  |||||||||||||||||    
T  28039922 tgtgagcttaactcagttggtaaggacaatgcataatatatg 28039881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 28832233 - 28832192
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||||||| ||||  ||||||||||||||||||    
T  28832233 tgtgagcttaactcagttggtatgaacaatgcataatatatg 28832192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 33153947 - 33153898
Alignment:
Q  84 gtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||| ||||||||||||||||| ||||   ||||||||||||||||||||    
T  33153947 gtccttgtgagcttaactcagttggtagggacaatgcataatatatgtaa 33153898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 1408438 - 1408482
Alignment:
Q  93 agcttaactcagtgggtaaaaacaatgcataatatatgtaaagtt 137  Q
    ||||||||||||| |||||  ||||||||||||||||| ||||||    
T  1408438 agcttaactcagttggtaaggacaatgcataatatatgcaaagtt 1408482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 9413809 - 9413857
Alignment:
Q  101 tcagtgggtaaaaacaatgcataatatatgtaaagtt-ggggttcgaat 148  Q
    ||||| ||||| ||||||||||||||||||||| ||| |||||||||||    
T  9413809 tcagttggtaagaacaatgcataatatatgtaaggttcggggttcgaat 9413857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 11410626 - 11410686
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagt-tggggttcgaat 148  Q
    ||||||||||||||||| ||||  |||||| ||||| |||||||| || ||||||||||||    
T  11410626 tgtgagcttaactcagttggtatgaacaatacataaaatatgtaaggtctggggttcgaat 11410686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 32874425 - 32874389
Alignment:
Q  115 caatgcataatatatgtaaagtt-ggggttcgaattc 150  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32874425 caatgcataatatatgtaaagttcggggttcgaattc 32874389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 39949815 - 39949851
Alignment:
Q  93 agcttaactcagtgggtaaaaacaatgcataatatat 129  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  39949815 agcttaactcagttggtaagaacaatgcataatatat 39949851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 49875660 - 49875620
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  49875660 gtgagcttaactcagttggtaaggacaatgcataatatatg 49875620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 44424 - 44479
Alignment:
Q  96 ttaactcagtgggtaaaaacaatgcataatatatgtaaagttggg-gttcgaattc 150  Q
    |||||||||| |||||||||||||||||||| |||||| || ||| ||||||||||    
T  44424 ttaactcagttggtaaaaacaatgcataatacatgtaaggtcgggagttcgaattc 44479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 6470677 - 6470634
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||||||||||| | |||| ||||||||||||||||||||    
T  6470677 gtgagcttaactcagttgataaagacaatgcataatatatgtaa 6470634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 8381262 - 8381215
Alignment:
Q  83 tgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||| |||||||||||||||| |||||| ||||||||||| |||||    
T  8381262 tgtccccgtgagcttaactcagttggtaaagacaatgcataacatatg 8381215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 9987073 - 9987124
Alignment:
Q  82 gtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||| |||||||||||||||| |||||  |||||||||| |||||||||    
T  9987073 gtgtccccgtgagcttaactcagttggtaaggacaatgcatattatatgtaa 9987124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 24438343 - 24438296
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatgtaaagtt 137  Q
    |||| ||||||||||| ||||| || ||||||||||||||||||||||    
T  24438343 gtgaacttaactcagttggtaagaataatgcataatatatgtaaagtt 24438296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 32409234 - 32409185
Alignment:
Q  95 cttaactcagtgggtaaaaacaatgcataatatatgtaaagttggggttc 144  Q
    ||||||| ||| |||||| |||||||||||||||||||| ||| ||||||    
T  32409234 cttaactgagttggtaaagacaatgcataatatatgtaaggttcgggttc 32409185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 331947 - 331907
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||| | |||||||||||||||||    
T  331947 gtgagcttaactcagttggtagagacaatgcataatatatg 331907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 2105896 - 2105948
Alignment:
Q  81 agtgtccctgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    |||||||  ||||| ||| ||| || |||||||||||||||||||||||||||    
T  2105896 agtgtcctcgtgagtttagctcggttggtaaaaacaatgcataatatatgtaa 2105948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 2617267 - 2617223
Alignment:
Q  89 tgtgagcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||    
T  2617267 tgtgagcttaacttagttggtagagacaatgcataatatatgtaa 2617223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 17420776 - 17420736
Alignment:
Q  93 agcttaactcagtgggtaaaaacaatgcataatatatgtaa 133  Q
    ||||||||||||| |||| ||||||| ||||||||||||||    
T  17420776 agcttaactcagttggtataaacaatacataatatatgtaa 17420736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 28951399 - 28951439
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  28951399 gtgagcttaactcagttggtatgaacaatgcataatatatg 28951439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 29335636 - 29335596
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    ||||||||||||||||  ||| |||||||||||||||||||    
T  29335636 gtgagcttaactcagttagtataaacaatgcataatatatg 29335596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 25384 - 25429
Alignment:
Q  85 tccctgtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||| |||||||||||||||| |||||  |||||||||||||||||    
T  25384 tccccgtgagcttaactcagttggtaaggacaatgcataatatatg 25429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 34949 - 34909
Alignment:
Q  90 gtgagcttaactcagtgggtaaaaacaatgcataatatatg 130  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  34949 gtgagcttaactcagttggtaaggacaatgcataatatatg 34909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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