View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17971_high_48 (Length: 227)

Name: NF17971_high_48
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17971_high_48
NF17971_high_48
[»] chr2 (24 HSPs)
chr2 (110-173)||(7565607-7565670)
chr2 (110-168)||(6178095-6178153)
chr2 (111-173)||(32652715-32652777)
chr2 (110-150)||(3177319-3177359)
chr2 (110-150)||(4167302-4167342)
chr2 (109-161)||(39788279-39788330)
chr2 (118-161)||(17244785-17244828)
chr2 (110-161)||(18514401-18514452)
chr2 (110-168)||(19093775-19093833)
chr2 (110-191)||(41644170-41644252)
chr2 (110-150)||(19424425-19424465)
chr2 (110-150)||(39167152-39167192)
chr2 (110-150)||(41961220-41961260)
chr2 (110-150)||(43648028-43648068)
chr2 (110-150)||(45328070-45328109)
chr2 (112-150)||(11366165-11366203)
chr2 (100-150)||(35959272-35959322)
chr2 (117-150)||(41465881-41465914)
chr2 (110-150)||(2325161-2325201)
chr2 (110-174)||(6357136-6357200)
chr2 (110-150)||(19289106-19289146)
chr2 (110-150)||(31862232-31862272)
chr2 (110-150)||(33660160-33660200)
chr2 (110-150)||(44914047-44914087)
[»] chr7 (23 HSPs)
chr7 (99-173)||(25470737-25470811)
chr7 (110-150)||(24212097-24212137)
chr7 (110-150)||(29173877-29173917)
chr7 (110-150)||(38258934-38258974)
chr7 (110-161)||(4902648-4902699)
chr7 (133-191)||(8759533-8759592)
chr7 (117-168)||(23402048-23402099)
chr7 (117-150)||(10481960-10481993)
chr7 (110-150)||(4583274-4583314)
chr7 (110-150)||(6546874-6546914)
chr7 (110-150)||(23111547-23111587)
chr7 (110-150)||(32432807-32432847)
chr7 (110-150)||(35353463-35353503)
chr7 (111-150)||(31578831-31578870)
chr7 (122-168)||(49002545-49002591)
chr7 (126-167)||(4618440-4618481)
chr7 (109-161)||(7743258-7743310)
chr7 (110-150)||(9355592-9355632)
chr7 (110-150)||(15612525-15612565)
chr7 (110-150)||(26980661-26980701)
chr7 (110-150)||(30055882-30055922)
chr7 (110-150)||(31520507-31520547)
chr7 (110-150)||(37703264-37703304)
[»] chr1 (28 HSPs)
chr1 (110-168)||(47555076-47555134)
chr1 (108-168)||(10598206-10598266)
chr1 (133-173)||(422299-422339)
chr1 (127-190)||(3120548-3120612)
chr1 (110-150)||(8222504-8222544)
chr1 (110-150)||(32216431-32216471)
chr1 (110-161)||(5500681-5500732)
chr1 (105-163)||(42663227-42663285)
chr1 (111-168)||(4146690-4146747)
chr1 (117-174)||(26970836-26970893)
chr1 (110-150)||(2960124-2960164)
chr1 (110-150)||(10923103-10923143)
chr1 (110-150)||(14758408-14758448)
chr1 (110-150)||(34012142-34012182)
chr1 (110-150)||(46931786-46931826)
chr1 (110-161)||(16135651-16135702)
chr1 (111-150)||(30254799-30254838)
chr1 (110-148)||(32267412-32267450)
chr1 (108-168)||(4963541-4963601)
chr1 (110-138)||(1359696-1359724)
chr1 (110-150)||(15168472-15168512)
chr1 (110-150)||(22171087-22171127)
chr1 (110-150)||(27532742-27532782)
chr1 (116-168)||(31804770-31804822)
chr1 (110-150)||(31962993-31963033)
chr1 (110-150)||(47682254-47682294)
chr1 (110-150)||(48353918-48353958)
chr1 (110-150)||(48620965-48621005)
[»] chr6 (12 HSPs)
chr6 (110-173)||(25441803-25441866)
chr6 (111-158)||(4104347-4104394)
chr6 (110-173)||(4487725-4487788)
chr6 (114-161)||(6613666-6613713)
chr6 (97-156)||(21016718-21016777)
chr6 (110-148)||(1946218-1946256)
chr6 (110-150)||(3879703-3879743)
chr6 (110-150)||(6090946-6090986)
chr6 (110-160)||(19632078-19632128)
chr6 (113-150)||(8513601-8513638)
chr6 (114-150)||(7054540-7054576)
chr6 (110-150)||(20768462-20768502)
[»] chr5 (35 HSPs)
chr5 (110-173)||(8762865-8762928)
chr5 (110-168)||(21321071-21321129)
chr5 (110-168)||(22616811-22616869)
chr5 (106-175)||(42682561-42682630)
chr5 (110-150)||(2888200-2888240)
chr5 (110-150)||(40133765-40133805)
chr5 (111-174)||(33848017-33848080)
chr5 (110-148)||(11898197-11898235)
chr5 (112-150)||(33908612-33908650)
chr5 (110-191)||(10237710-10237791)
chr5 (109-150)||(22020003-22020044)
chr5 (112-191)||(12080405-12080485)
chr5 (110-150)||(23954557-23954597)
chr5 (110-150)||(35511237-35511277)
chr5 (110-150)||(36860804-36860844)
chr5 (110-150)||(36867142-36867182)
chr5 (110-150)||(38527992-38528032)
chr5 (111-150)||(27318244-27318283)
chr5 (106-161)||(41031349-41031404)
chr5 (112-150)||(8437345-8437383)
chr5 (110-148)||(14409096-14409134)
chr5 (110-176)||(27579339-27579405)
chr5 (110-168)||(31878705-31878763)
chr5 (110-167)||(13888429-13888486)
chr5 (110-147)||(13956119-13956156)
chr5 (137-173)||(3014757-3014793)
chr5 (110-150)||(12910735-12910775)
chr5 (110-150)||(19120239-19120279)
chr5 (110-150)||(22255562-22255602)
chr5 (110-150)||(25500681-25500721)
chr5 (110-150)||(25669956-25669996)
chr5 (110-150)||(28416306-28416346)
chr5 (110-150)||(32563520-32563560)
chr5 (110-150)||(39573191-39573231)
chr5 (110-150)||(42343101-42343141)
[»] chr4 (33 HSPs)
chr4 (105-191)||(9409522-9409609)
chr4 (110-168)||(5914939-5914997)
chr4 (110-150)||(6864415-6864455)
chr4 (114-174)||(9743902-9743962)
chr4 (110-150)||(25184493-25184533)
chr4 (110-150)||(34361282-34361322)
chr4 (110-150)||(49376347-49376387)
chr4 (110-161)||(2708218-2708269)
chr4 (101-150)||(19440430-19440479)
chr4 (111-148)||(32579828-32579865)
chr4 (110-150)||(4205364-4205404)
chr4 (110-150)||(7703889-7703929)
chr4 (110-174)||(14246507-14246571)
chr4 (110-150)||(33816307-33816347)
chr4 (110-150)||(46887949-46887989)
chr4 (111-163)||(51960015-51960067)
chr4 (111-174)||(2570793-2570856)
chr4 (111-150)||(32592464-32592503)
chr4 (105-160)||(33035088-33035143)
chr4 (110-168)||(17612655-17612713)
chr4 (114-148)||(32912374-32912408)
chr4 (111-148)||(17173672-17173709)
chr4 (109-150)||(26896468-26896509)
chr4 (110-175)||(47073066-47073131)
chr4 (105-146)||(47237599-47237640)
chr4 (103-148)||(55240889-55240934)
chr4 (110-150)||(3042999-3043039)
chr4 (110-150)||(19089244-19089284)
chr4 (110-150)||(23431935-23431975)
chr4 (110-150)||(28002777-28002817)
chr4 (110-150)||(35020822-35020862)
chr4 (110-150)||(36493480-36493520)
chr4 (110-150)||(47254120-47254160)
[»] chr3 (31 HSPs)
chr3 (110-168)||(31706489-31706547)
chr3 (110-150)||(26941025-26941065)
chr3 (105-163)||(23165286-23165344)
chr3 (111-157)||(53811435-53811481)
chr3 (110-150)||(37158079-37158119)
chr3 (110-150)||(37203439-37203479)
chr3 (110-150)||(39283023-39283063)
chr3 (111-174)||(5125534-5125597)
chr3 (110-173)||(48154356-48154419)
chr3 (112-150)||(11356925-11356963)
chr3 (110-148)||(33378550-33378588)
chr3 (100-161)||(49359287-49359349)
chr3 (108-161)||(42205460-42205513)
chr3 (111-148)||(43975658-43975695)
chr3 (133-174)||(54607960-54608001)
chr3 (110-150)||(4015830-4015870)
chr3 (110-150)||(11467181-11467221)
chr3 (110-150)||(20373028-20373068)
chr3 (110-150)||(21193978-21194018)
chr3 (110-150)||(36012511-36012551)
chr3 (110-150)||(40552024-40552064)
chr3 (110-150)||(46297527-46297567)
chr3 (110-150)||(51212542-51212582)
chr3 (107-168)||(435329-435387)
chr3 (110-168)||(11019798-11019856)
chr3 (111-148)||(21009567-21009604)
chr3 (110-150)||(11357146-11357186)
chr3 (114-150)||(22622487-22622523)
chr3 (110-150)||(34133329-34133369)
chr3 (110-161)||(40640299-40640351)
chr3 (110-150)||(42505840-42505880)
[»] chr8 (28 HSPs)
chr8 (100-168)||(3859366-3859433)
chr8 (104-168)||(6446175-6446239)
chr8 (110-150)||(16446646-16446686)
chr8 (110-150)||(33906589-33906629)
chr8 (110-150)||(43643366-43643406)
chr8 (110-161)||(30650904-30650955)
chr8 (111-150)||(35859313-35859352)
chr8 (117-174)||(18756343-18756400)
chr8 (110-159)||(41190621-41190670)
chr8 (109-173)||(1872581-1872645)
chr8 (114-174)||(4108588-4108648)
chr8 (109-161)||(7291047-7291099)
chr8 (109-168)||(3038726-3038785)
chr8 (114-161)||(23176460-23176507)
chr8 (111-150)||(30654355-30654394)
chr8 (110-157)||(34463906-34463953)
chr8 (110-148)||(1149403-1149441)
chr8 (105-163)||(5018553-5018611)
chr8 (110-148)||(41362803-41362841)
chr8 (111-148)||(1953760-1953797)
chr8 (110-150)||(1205306-1205346)
chr8 (110-150)||(4132457-4132497)
chr8 (110-150)||(5299717-5299757)
chr8 (110-150)||(7890728-7890768)
chr8 (114-150)||(8803591-8803627)
chr8 (110-150)||(9864550-9864590)
chr8 (110-150)||(37970290-37970330)
chr8 (114-150)||(38644357-38644393)
[»] scaffold0312 (1 HSPs)
scaffold0312 (133-173)||(8233-8273)
[»] scaffold0022 (1 HSPs)
scaffold0022 (110-150)||(145780-145820)
[»] scaffold0291 (1 HSPs)
scaffold0291 (110-150)||(8267-8307)
[»] scaffold0061 (1 HSPs)
scaffold0061 (110-150)||(44336-44376)
[»] scaffold0017 (1 HSPs)
scaffold0017 (110-150)||(154411-154451)


Alignment Details
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 7565670 - 7565607
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  7565670 cttctacggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcata 7565607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 6178153 - 6178095
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    ||||||||||||||||| |||||||||||||||  |||||| |||||||||| ||||||    
T  6178153 cttctacggtgcagtcaaaaaactgacttttttagaaaagttattttgtttagccaata 6178095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 32652777 - 32652715
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    ||||| |||||||||| |||| | |||||||| ||||||||||||||||||||||||| ||||    
T  32652777 ttctatggtgcagtcaaaaaaataacttttttaaaaaagtcattttgtttaaccaatagcata 32652715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 3177359 - 3177319
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  3177359 cttctacggtgcagtcaggaaactgacttttttgaaaaagt 3177319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 4167342 - 4167302
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  4167342 cttctacggtgcagtcagaaaattgacttttttgaaaaagt 4167302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 39788279 - 39788330
Alignment:
Q  109 acttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  39788279 acttctacggtgcagtctgaaaactgatttttttgaaaaagt-attttgttta 39788330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 17244785 - 17244828
Alignment:
Q  118 gtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  17244785 gtgcagtcagaaaactgacttttttgaaaaaattattttgttta 17244828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 18514401 - 18514452
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    ||||||||||| |||||| ||||||| |||||||||||||| ||||||||||    
T  18514401 cttctacggtggagtcaggaaactgaattttttgaaaaagttattttgttta 18514452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 19093833 - 19093775
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    ||||||||||||||||| |||| |||||||||| ||||||| | ||||||||| |||||    
T  19093833 cttctacggtgcagtcaaaaaattgacttttttaaaaaagttaatttgtttaatcaata 19093775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 41644252 - 41644170
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataact-ttgatgttatgtcag 191  Q
    ||||||||||||||| | |||||| ||||||||||||||   |||||||||| ||||||| |||| | ||||||| |||||||    
T  41644252 cttctacggtgcagtaaaaaaacttacttttttgaaaaatatattttgtttagccaataatataattgttgatgtcatgtcag 41644170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 19424425 - 19424465
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  19424425 cttctacggtgcagtcatcaaactgacttttttgaaaaagt 19424465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 39167152 - 39167192
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  39167152 cttctactgtgcaatcagaaaactgacttttttgaaaaagt 39167192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 41961260 - 41961220
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  41961260 cttctacggtgcagtcaggaaactgaattttttgaaaaagt 41961220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 43648028 - 43648068
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  43648028 cttctacggtgcagtcaggaaattgacttttttgaaaaagt 43648068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 45328109 - 45328070
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  45328109 cttctacggtgcagtcagaaa-ctgacttttttgaaaaagt 45328070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 11366165 - 11366203
Alignment:
Q  112 tctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  11366165 tctacggtgcagtcagaaaattgatttttttgaaaaagt 11366203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 35959322 - 35959272
Alignment:
Q  100 tatatgggcacttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||  ||||||||||||| ||| |||| ||||||||||||||||||    
T  35959322 tatatgggagcttctacggtgcactcaaaaaattgacttttttgaaaaagt 35959272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 41465914 - 41465881
Alignment:
Q  117 ggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||| |||||||||||||||||||||||||    
T  41465914 ggtgcagttagaaaactgacttttttgaaaaagt 41465881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 2325161 - 2325201
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||||| ||| |||||| |||||||    
T  2325161 cttctacggtgcagtcagaaaattgattttttttaaaaagt 2325201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 6357200 - 6357136
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataa 174  Q
    |||||| |||| |||||  ||| |||||||||||||||||||||||  |||| |||||| |||||    
T  6357200 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcatttaatttagccaatagcataa 6357136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 19289106 - 19289146
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| |||||||| || ||||||||||||||||||||||    
T  19289106 cttctatggtgcagttaggaaactgacttttttgaaaaagt 19289146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 31862272 - 31862232
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  31862272 cttctatggtgcagtcgggaaactgacttttttgaaaaagt 31862232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 33660160 - 33660200
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  |||||||||||| |||||||||    
T  33660160 cttctacggtgcagtcatgaaactgacttttctgaaaaagt 33660200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 44914087 - 44914047
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||  ||||||||||||||    
T  44914087 cttctacggtgcagtcagcaaactggtttttttgaaaaagt 44914047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 25470811 - 25470737
Alignment:
Q  99 ttatatgggcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    |||||||||  |||||| |||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  25470811 ttatatgggagcttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcata 25470737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 24212137 - 24212097
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  24212137 cttctacggtgcagtcaggaaactgacttttttgaaaaagt 24212097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 29173917 - 29173877
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  29173917 cttctacgatgcagtcagaaaactgacttttttgaaaaagt 29173877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 38258974 - 38258934
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  38258974 cttctacggtgcagtcagaaaactgatttttttgaaaaagt 38258934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 4902699 - 4902648
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    |||||| |||| |||||||||| |||||||||||||||||| ||||||||||    
T  4902699 cttctatggtgaagtcagaaaattgacttttttgaaaaagttattttgttta 4902648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 8759592 - 8759533
Alignment:
Q  133 tgacttttttgaaaaagtcattttgtttaaccaataacataact-ttgatgttatgtcag 191  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||||||| |||||||    
T  8759592 tgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcag 8759533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 23402048 - 23402099
Alignment:
Q  117 ggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||| ||||||    
T  23402048 ggtgcagtcaaaaaactgacttttttaaaaaagttattttgtttagccaata 23402099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 10481993 - 10481960
Alignment:
Q  117 ggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||||||||||||||||||||||    
T  10481993 ggtgcagtcagaaaactgacttttttgaaaaagt 10481960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 4583314 - 4583274
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  4583314 cttctacggtgcagccagaaaattgacttttttgaaaaagt 4583274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 6546914 - 6546874
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  6546914 cttctacggtgcagtcatgaaactgacttttttgaaaaagt 6546874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 23111587 - 23111547
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  23111587 cttctacggtacagtcagaaaactgacttttttaaaaaagt 23111547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 32432847 - 32432807
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  32432847 cttctacggtgcagtcaggaaactgacttttttaaaaaagt 32432807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 35353503 - 35353463
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  35353503 cttctaaggtgcagtcaggaaactgacttttttgaaaaagt 35353463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 31578831 - 31578870
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  31578831 ttctatggtgcagtcaggaaactgacttttttgaaaaagt 31578870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 49002591 - 49002545
Alignment:
Q  122 agtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  49002591 agtcagaaaactgatttttttgaaaaagttattttatttaatcaata 49002545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 4618440 - 4618481
Alignment:
Q  126 agaaaactgacttttttgaaaaagtcattttgtttaaccaat 167  Q
    |||||| |||||||||||||||| | ||||||||||||||||    
T  4618440 agaaaattgacttttttgaaaaacttattttgtttaaccaat 4618481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 7743310 - 7743258
Alignment:
Q  109 acttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    |||||||||||| ||||||||| ||||||||| |  |||||| ||||||||||    
T  7743310 acttctacggtggagtcagaaatctgacttttctagaaaagttattttgttta 7743258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 9355592 - 9355632
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||| ||| ||||||||||||||||||||||    
T  9355592 cttctatggtgcaggcaggaaactgacttttttgaaaaagt 9355632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 15612525 - 15612565
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  |||||||||||||| |||||||    
T  15612525 cttctacggtgcagtcatgaaactgactttttttaaaaagt 15612565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 26980701 - 26980661
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||  ||||||||||||||||||||||    
T  26980701 cttctaaggtgcagtcatgaaactgacttttttgaaaaagt 26980661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 30055922 - 30055882
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  30055922 cttctacggtgcagtcaggaaattgacttttttgataaagt 30055882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 31520507 - 31520547
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| |||||||| || ||||||||||||||||||||||    
T  31520507 cttctatggtgcagttaggaaactgacttttttgaaaaagt 31520547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 37703264 - 37703304
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||| ||| ||||||||||||||||||    
T  37703264 cttctatggtgcagtcagtaaattgacttttttgaaaaagt 37703304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 47555134 - 47555076
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||    
T  47555134 cttctacggtgcagttaggaaactgacttttttgaaaaagttattttgtttaaccaata 47555076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 10598266 - 10598206
Alignment:
Q  108 cacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||    
T  10598266 cacttctacggtgcagtcaagaaactgacttttttgaaaaagttgttttgtttaaccaata 10598206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 422339 - 422299
Alignment:
Q  133 tgacttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  422339 tgacttttttgaaaaagtcattttatttaaccaataacata 422299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 3120548 - 3120612
Alignment:
Q  127 gaaaactgacttttttgaaaaagtcattttgtttaaccaataacataact-ttgatgttatgtca 190  Q
    |||||||||||||||| ||||| | |||||||||||||||||| |||||| |||||| |||||||    
T  3120548 gaaaactgacttttttaaaaaaattattttgtttaaccaataatataactgttgatgctatgtca 3120612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 8222544 - 8222504
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  8222544 cttctacggtacagtcagaaaactgacttttttgaaaaagt 8222504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 32216471 - 32216431
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  32216471 cttctacggtgcagtcagaaaactgacttttttaaaaaagt 32216431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 5500732 - 5500681
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    ||||||||||||||| | |||||| |||||||||||||||| ||||||||||    
T  5500732 cttctacggtgcagttaaaaaactaacttttttgaaaaagttattttgttta 5500681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 42663227 - 42663285
Alignment:
Q  105 gggcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaac 163  Q
    ||||||||||| ||||||||||  ||| |||||||||||||||||| ||||| ||||||    
T  42663227 gggcacttctatggtgcagtcacgaaattgacttttttgaaaaagttattttatttaac 42663285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 4146690 - 4146747
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||||||| ||| |  |||||||||||||||||||||| ||||||||||| |||||    
T  4146690 ttctacggtgaagttaagaaactgacttttttgaaaaagttattttgtttaatcaata 4146747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 26970893 - 26970836
Alignment:
Q  117 ggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataa 174  Q
    |||| |||||| |||||||||||||||||||||| ||||| ||| ||||||| |||||    
T  26970893 ggtgtagtcagtaaactgacttttttgaaaaagttattttattttaccaatagcataa 26970836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 2960164 - 2960124
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  2960164 cttctacggtgcagtcaggaaactgatttttttgaaaaagt 2960124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 10923143 - 10923103
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  10923143 cttctatggtgcagtcagaaaactgactcttttgaaaaagt 10923103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 14758448 - 14758408
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  14758448 cttctacggtgcagtcacgaaactgacttttttgaaaaagt 14758408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 34012142 - 34012182
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  34012142 cttctacggtgcagtcaggaaactgacttttttaaaaaagt 34012182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 46931826 - 46931786
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  46931826 cttctacggtgcagtaaggaaactgacttttttgaaaaagt 46931786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 16135702 - 16135651
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    |||||| ||||||||||||||| |  ||||||||||||||| ||||||||||    
T  16135702 cttctagggtgcagtcagaaaatttgcttttttgaaaaagttattttgttta 16135651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 30254838 - 30254799
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  30254838 ttctacggtgcagtcaggaaactgacttttttaaaaaagt 30254799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 32267450 - 32267412
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  32267450 cttctacggtgcagtcaggaaattgacttttttgaaaaa 32267412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 4963541 - 4963601
Alignment:
Q  108 cacttctacggtgcagtcagaaaactgacttttttg-aaaaagtcattttgtttaaccaata 168  Q
    ||||||||||||||||| ||||| |||||||||||| ||||| | |||||||||| ||||||    
T  4963541 cacttctacggtgcagtaagaaa-ctgacttttttgaaaaaaattattttgtttagccaata 4963601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 1359696 - 1359724
Alignment:
Q  110 cttctacggtgcagtcagaaaactgactt 138  Q
    |||||||||||||||||||||||||||||    
T  1359696 cttctacggtgcagtcagaaaactgactt 1359724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 15168512 - 15168472
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||| || ||||||| ||||||||||||||    
T  15168512 cttctacggtgcagttaggaaactgatttttttgaaaaagt 15168472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 22171127 - 22171087
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||| | |||||||||| ||||||||||||||    
T  22171127 cttctacggtgcaattagaaaactgatttttttgaaaaagt 22171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 27532742 - 27532782
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||| ||||||||||||||    
T  27532742 cttctacggtgcagtcatgaaactgatttttttgaaaaagt 27532782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 31804770 - 31804822
Alignment:
Q  116 cggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||||||||||||| ||| ||||||   ||||| |||||||||||||||||    
T  31804770 cggtgcagtcagaaaattgatttttttagtaaagttattttgtttaaccaata 31804822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 31963033 - 31962993
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||| |  ||||||||||||||||||||||    
T  31963033 cttctacggtgcagttatgaaactgacttttttgaaaaagt 31962993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 47682254 - 47682294
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||| ||||||||||||||||| ||||    
T  47682254 cttctatggtgcagtcagtaaactgacttttttgaacaagt 47682294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 48353958 - 48353918
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||| ||||||||||||||    
T  48353958 cttctacggtgcagtcatgaaactgatttttttgaaaaagt 48353918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 48621005 - 48620965
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  |||||||||||| |||||||||    
T  48621005 cttctacggtgcagtcatgaaactgacttttctgaaaaagt 48620965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 25441866 - 25441803
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    |||||| |||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  25441866 cttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcata 25441803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 4104394 - 4104347
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgt 158  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||    
T  4104394 ttctactgtgcagtcagaaaactgacttttttgaaaaagttattttgt 4104347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 4487725 - 4487788
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    |||||| |||||||| | |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  4487725 cttctatggtgcagttaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcata 4487788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 6613666 - 6613713
Alignment:
Q  114 tacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  6613666 tacggtgcagtcaggaaactgacttttttgaaaaagttattttgttta 6613713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 21016718 - 21016777
Alignment:
Q  97 tgttatatgggcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcatttt 156  Q
    |||| ||||||  |||||||||||||||||||||| || ||||||||||||||| |||||    
T  21016718 tgttttatgggagcttctacggtgcagtcagaaaattgtcttttttgaaaaagttatttt 21016777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 1946256 - 1946218
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  1946256 cttctacggtgcagtcaggaaactgacttttttgaaaaa 1946218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 3879703 - 3879743
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  3879703 cttctacggtgcagtcaggaaactgatttttttgaaaaagt 3879743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 6090946 - 6090986
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  6090946 cttctacggtgcagtcagaaaacttacttttttaaaaaagt 6090986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 19632128 - 19632078
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttt 160  Q
    ||||||||||||||| |||||| ||| |||||| ||||||| |||||||||    
T  19632128 cttctacggtgcagttagaaaattgatttttttcaaaaagttattttgttt 19632078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 8513638 - 8513601
Alignment:
Q  113 ctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  8513638 ctacggtgcagtcatgaaactgacttttttgaaaaagt 8513601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 7054540 - 7054576
Alignment:
Q  114 tacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||  ||||||||||||||||||||||    
T  7054540 tacggtgcagtcaagaaactgacttttttgaaaaagt 7054576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 20768502 - 20768462
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||| ||| ||||||||||||||    
T  20768502 cttctacggtgcagtcaggaaattgatttttttgaaaaagt 20768462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 8762865 - 8762928
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    |||||| |||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||    
T  8762865 cttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcata 8762928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 21321129 - 21321071
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  21321129 cttctatggtgcagccagaaaactgacttttttgaaaaagttattttgtttagccaata 21321071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 22616869 - 22616811
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||| ||||||||||||||||||| ||||||| |||||| |||||||||| ||||||    
T  22616869 cttctatggtgcagtcagaaaactgatttttttggaaaagttattttgtttagccaata 22616811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 42682630 - 42682561
Alignment:
Q  106 ggcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataac 175  Q
    ||||||||||||||||||| || |||| |||||||||  |||||| |||||| ||||||||||| |||||    
T  42682630 ggcacttctacggtgcagttaggaaaccgacttttttttaaaagttattttggttaaccaataatataac 42682561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 2888200 - 2888240
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  2888200 cttctacggtgcagtcagaaaattgacttttttgaaaaagt 2888240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 40133805 - 40133765
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  40133805 cttctacggtgcagtcagaaaattgacttttttgaaaaagt 40133765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 33848017 - 33848080
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataa 174  Q
    ||||||||||| ||||||||| ||||| |||||||||||| | ||||||||| |||||| ||||    
T  33848017 ttctacggtgcggtcagaaaattgactattttgaaaaagttactttgtttaatcaataatataa 33848080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 11898235 - 11898197
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  11898235 cttctacggtgcagtcaggaaactgacttttttgaaaaa 11898197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 33908650 - 33908612
Alignment:
Q  112 tctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  33908650 tctacggtgcagttagaaaactgacttttttgaaaaagt 33908612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 10237791 - 10237710
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataactttgatgttatgtcag 191  Q
    ||||||| ||||||||| || ||||||||||||  |||||| |||||||||| ||||||  ||||| | ||||| |||||||    
T  10237791 cttctacagtgcagtcaaaagactgacttttttagaaaagttattttgtttagccaatagtataacgtcgatgtcatgtcag 10237710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 22020044 - 22020003
Alignment:
Q  109 acttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  22020044 acttctacggtgcagtcatgaaactgacttttttgaaaaagt 22020003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 12080405 - 12080485
Alignment:
Q  112 tctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataact-ttgatgttatgtcag 191  Q
    |||| |||| |||||| ||| |||||||||||||||||| ||||||||||  | ||||||||| | ||||||| |||||||    
T  12080405 tctatggtgtagtcaggaaattgacttttttgaaaaagttattttgtttagtcgataacataattgttgatgtcatgtcag 12080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 23954557 - 23954597
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  23954557 cttctatggtgcagtcaggaaactgacttttttgaaaaagt 23954597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 35511237 - 35511277
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  35511237 cttctacggtgcagtcaggaaactgacttttttaaaaaagt 35511277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 36860844 - 36860804
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  36860844 cttctacggtgcagtcagaaaattgacttttttaaaaaagt 36860804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 36867182 - 36867142
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  36867182 cttctacggtgcagtcagaaaattgacttttttaaaaaagt 36867142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 38527992 - 38528032
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  38527992 cttctacggtgcagtcaggaaactgatttttttgaaaaagt 38528032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 27318244 - 27318283
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  27318244 ttctatggtgcagtcagaaaactgacttttttaaaaaagt 27318283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 41031349 - 41031404
Alignment:
Q  106 ggcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    |||||||||||| ||||||||| |||||||||||||| ||||| | ||||| ||||    
T  41031349 ggcacttctacgttgcagtcaggaaactgacttttttaaaaaaattattttattta 41031404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 8437383 - 8437345
Alignment:
Q  112 tctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  8437383 tctacgatgcagtcaggaaactgacttttttgaaaaagt 8437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 14409096 - 14409134
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  14409096 cttctacggtgcagtcaggaaactgatttttttgaaaaa 14409134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 27579405 - 27579339
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataact 176  Q
    |||||||||| ||||||||||||| ||||||||| |||||| ||| | ||||  |||||| ||||||    
T  27579405 cttctacggtacagtcagaaaactaacttttttggaaaagttattatctttagacaataatataact 27579339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 31878763 - 31878705
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    ||||||||||| ||| |||||| |||||||||  ||||||| | |||||||||||||||    
T  31878763 cttctacggtgaagtaagaaaattgactttttaaaaaaagttagtttgtttaaccaata 31878705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 13888486 - 13888429
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaat 167  Q
    |||||| |||| ||| | |||| |||||||||| ||||||||||||| ||||||||||    
T  13888486 cttctatggtgtagtaaaaaaaatgacttttttaaaaaagtcattttatttaaccaat 13888429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 13956119 - 13956156
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaa 147  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  13956119 cttctacggtgcagtcagaaagctgatttttttgaaaa 13956156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 3014793 - 3014757
Alignment:
Q  137 ttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  3014793 tttttttaaaaagtcattttgtttaaccaatagcata 3014757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 12910775 - 12910735
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||| ||||||||||||||| ||||||    
T  12910775 cttctatggtgcagtcaggaaactgacttttttggaaaagt 12910735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 19120279 - 19120239
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||  ||||||||||||||||||||||    
T  19120279 cttctaaggtgcagtcatgaaactgacttttttgaaaaagt 19120239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 22255602 - 22255562
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||| ||||||| |||||||||||||| |||||||    
T  22255602 cttctacggtacagtcaggaaactgactttttttaaaaagt 22255562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 25500681 - 25500721
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||| ||||||||||||||    
T  25500681 cttctacggtgcagtcatgaaactgatttttttgaaaaagt 25500721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 25669996 - 25669956
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||| ||||||||||||||    
T  25669996 cttctacggtgcagtcatgaaactgatttttttgaaaaagt 25669956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 28416306 - 28416346
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  28416306 cttctacggtgcagtcatgaagctgacttttttgaaaaagt 28416346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 32563560 - 32563520
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||| |  ||||||||||||||||||||||    
T  32563560 cttctacggtgcagttatgaaactgacttttttgaaaaagt 32563520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 39573231 - 39573191
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||| |  ||||||||||||||||||||||    
T  39573231 cttctacggtgcagttatgaaactgacttttttgaaaaagt 39573191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 42343141 - 42343101
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  |||||||||||| |||||||||    
T  42343141 cttctacggtgcagtcatgaaactgacttttctgaaaaagt 42343101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 9409609 - 9409522
Alignment:
Q  105 gggcacttctacggt-gcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataactttgatgttatgtcag 191  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||| |||  |||||  ||||||||||||| |||||||    
T  9409609 gggcacttctaaggttgcagtcagaaaactgacttttttgaaagagttattttgattagtcaatagtataactttgatgtcatgtcag 9409522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 5914939 - 5914997
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||| |||||||||| |||| |||||||||| |||||||||||||||||||||||||    
T  5914939 cttctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaata 5914997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 6864455 - 6864415
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6864455 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 6864415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 9743962 - 9743902
Alignment:
Q  114 tacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataa 174  Q
    ||||||| ||||| |||| |||||||||||||||||| |||||||||||||||||| ||||    
T  9743962 tacggtgaagtcaaaaaattgacttttttgaaaaagttattttgtttaaccaataatataa 9743902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 25184533 - 25184493
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  25184533 cttctatggtgcagtcagaaaactgacttttttgaaaaagt 25184493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 34361282 - 34361322
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  34361282 cttctacggtgcagtcaggaaactgacttttttgaaaaagt 34361322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 49376387 - 49376347
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  49376387 cttctacggtgcagtcaggaaactgacttttttgaaaaagt 49376347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 2708269 - 2708218
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    ||||||||||| |||||||||| |||||||||| ||||||| ||||||||||    
T  2708269 cttctacggtgaagtcagaaaattgacttttttaaaaaagttattttgttta 2708218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 19440430 - 19440479
Alignment:
Q  101 atatgggcacttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||  |||||||||||||||||| |||||||||||||| |||||||    
T  19440430 atatgggagcttctacggtgcagtcaggaaactgacttttttaaaaaagt 19440479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 32579865 - 32579828
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    |||||||||||||| |||||||||||||||||||||||    
T  32579865 ttctacggtgcagttagaaaactgacttttttgaaaaa 32579828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 4205404 - 4205364
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  4205404 cttctacggtgcagtcaagaaactgacttttttgaaaaagt 4205364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 7703929 - 7703889
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  7703929 cttctacggtgcagtcatgaaactgacttttttgaaaaagt 7703889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 14246571 - 14246507
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataa 174  Q
    |||||| |||| |||||  ||| |||||||||||||||||||||||| |||| |||||| |||||    
T  14246571 cttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataa 14246507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 33816307 - 33816347
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  33816307 cttctacgatgcagtcaggaaactgacttttttgaaaaagt 33816347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 46887949 - 46887989
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  46887949 cttctacggtgcaatcaggaaactgacttttttgaaaaagt 46887989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 51960067 - 51960015
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaac 163  Q
    |||||| |||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  51960067 ttctacagtgcagtcagaaaattgatttttttggaaaagttattttgtttaac 51960015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 2570856 - 2570793
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataa 174  Q
    ||||||||||||||||||||||||| ||||||  |||||| ||| ||||||  |||||| ||||    
T  2570856 ttctacggtgcagtcagaaaactgatttttttagaaaagttattatgtttagacaataatataa 2570793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 32592503 - 32592464
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  32592503 ttctacggtgcagtcataaaattgacttttttgaaaaagt 32592464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 33035088 - 33035143
Alignment:
Q  105 gggcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttt 160  Q
    ||||||||||| ||||||||||| |||||| ||||| ||||||||  |||||||||    
T  33035088 gggcacttctatggtgcagtcaggaaactgtcttttctgaaaaagatattttgttt 33035143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 17612713 - 17612655
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||||| ||||||||||||| | | |||||||||||||| ||||| |||| ||||||    
T  17612713 cttctacgatgcagtcagaaaattcatttttttgaaaaagttattttatttagccaata 17612655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 32912374 - 32912408
Alignment:
Q  114 tacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    |||||||||||||| ||||||||||||||||||||    
T  32912374 tacggtgcagtcaggaaactgacttttttgaaaaa 32912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 17173709 - 17173672
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  17173709 ttctacggtgcagtcaagaaactgacttttttgaaaaa 17173672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 26896509 - 26896468
Alignment:
Q  109 acttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||||||| ||| |||||||||| |||||||    
T  26896509 acttctacggtgcagtcaggaaattgacttttttaaaaaagt 26896468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 47073066 - 47073131
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataac 175  Q
    |||||| |||| |||||| ||| ||||| |||||||||||| ||||| ||| ||||||| ||||||    
T  47073066 cttctatggtgtagtcagtaaattgactattttgaaaaagttattttattttaccaatagcataac 47073131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 47237640 - 47237599
Alignment:
Q  105 gggcacttctacggtgcagtcagaaaactgacttttttgaaa 146  Q
    ||||||||||||| |||||||| |||||||| ||||||||||    
T  47237640 gggcacttctacgatgcagtcaaaaaactgagttttttgaaa 47237599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 55240889 - 55240934
Alignment:
Q  103 atgggcacttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    ||||| |||||||||||||||| |  ||||||||||||||||||||    
T  55240889 atgggaacttctacggtgcagttatgaaactgacttttttgaaaaa 55240934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 3043039 - 3042999
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  3043039 cttctacggtgcagtcaagaaattgacttttttgaaaaagt 3042999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 19089244 - 19089284
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  19089244 cttctacggtgcagtcaggaaattgacttttttgataaagt 19089284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 23431975 - 23431935
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  23431975 cttctacagtgcagtcatgaaactgacttttttgaaaaagt 23431935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 28002777 - 28002817
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||  ||||||||| ||||||||||||||||||||||    
T  28002777 cttctacactgcagtcaggaaactgacttttttgaaaaagt 28002817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 35020822 - 35020862
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  35020822 cttctacggtgtagtcagaaaactgactcttttaaaaaagt 35020862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 36493480 - 36493520
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||| ||| ||||||||||||||||||    
T  36493480 cttctatggtgcagtcaggaaattgacttttttgaaaaagt 36493520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 47254160 - 47254120
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||| |||||  ||||||||||||||||||||||    
T  47254160 cttctacggtggagtcatcaaactgacttttttgaaaaagt 47254120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 31706489 - 31706547
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  31706489 cttcaacggtgcagtcaaaaaactgacttttttgaaaaagttattttgtttaatcaata 31706547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 26941025 - 26941065
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26941025 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 26941065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 23165286 - 23165344
Alignment:
Q  105 gggcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaac 163  Q
    ||||||||||||||||||||||  ||| |||||||||||||||||| ||||| ||||||    
T  23165286 gggcacttctacggtgcagtcatgaaattgacttttttgaaaaagttattttatttaac 23165344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 53811435 - 53811481
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttg 157  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  53811435 ttctacggtgcagtcagaaaactgactttcttgaaaaagttattttg 53811481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 37158119 - 37158079
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  37158119 cttctacggtgcagtcaggaaactgacttttttgaaaaagt 37158079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 37203479 - 37203439
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  37203479 cttctacggtgcagtcaggaaactgacttttttgaaaaagt 37203439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 39283063 - 39283023
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  39283063 cttctacggtgcagtcaggaaactgacttttttgaaaaagt 39283023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 5125597 - 5125534
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataa 174  Q
    ||||| |||| |||||  ||| |||||||||||||||||| ||||| |||||||||||||||||    
T  5125597 ttctatggtgtagtcaagaaaatgacttttttgaaaaagttattttatttaaccaataacataa 5125534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 48154356 - 48154419
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    |||||| |||||||| | |||| |||||||||| ||||| ||||||||||||||||||| ||||    
T  48154356 cttctatggtgcagttaaaaaaatgacttttttaaaaaaatcattttgtttaaccaatagcata 48154419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 11356925 - 11356963
Alignment:
Q  112 tctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  11356925 tctacggtgcagtcagacaactgacttttttgaaaaagt 11356963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 33378550 - 33378588
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  33378550 cttctacggtgcagtcaggaaactgacttttttgaaaaa 33378588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 49359287 - 49359349
Alignment:
Q  100 tatatgggcacttctacggtgcagtcagaaaactgacttttttg-aaaaagtcattttgttta 161  Q
    ||||||||  ||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||    
T  49359287 tatatgggggcttctacggtgcagttagaaaattgacttttttgaaaaaagttattttgttta 49359349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 42205513 - 42205460
Alignment:
Q  108 cacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    |||||||||||||||||||| ||||| | |||||| ||||||| ||||||||||    
T  42205513 cacttctacggtgcagtcaggaaactaaatttttttaaaaagttattttgttta 42205460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 43975658 - 43975695
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  43975658 ttctacggtgcagtcagaaaactgactcttttgaaaaa 43975695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 54608001 - 54607960
Alignment:
Q  133 tgacttttttgaaaaagtcattttgtttaaccaataacataa 174  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  54608001 tgacttttttgaaaaagtcattttatttagccaataacataa 54607960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 4015870 - 4015830
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  4015870 cttctacggtgcagtcatgaaactgacttttttgaaaaagt 4015830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 11467221 - 11467181
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  11467221 cttctacggtgcagtcatcaaactgacttttttgaaaaagt 11467181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 20373028 - 20373068
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  20373028 cttctatggtgcagtcaggaaactgacttttttgaaaaagt 20373068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 21194018 - 21193978
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  21194018 cttctacggtgcagtcatgaaactgacttttttgaaaaagt 21193978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 36012551 - 36012511
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  36012551 cttctacggtgcagtcatgaaactgacttttttgaaaaagt 36012511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 40552024 - 40552064
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  40552024 cttctacggtgcagtctggaaactgacttttttgaaaaagt 40552064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 46297527 - 46297567
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  46297527 cttctacggtgcagtcaaaaaactgacttttttaaaaaagt 46297567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 51212542 - 51212582
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  51212542 cttctatggtgcagtcagaaaactgacatttttgaaaaagt 51212582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 435387 - 435329
Alignment:
Q  107 gcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||||||||||||||||   ||||| ||||||||| |||||| |||||||||| ||||||    
T  435387 gcacttctacggtgcagtc---aaactaacttttttggaaaagttattttgtttagccaata 435329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 11019856 - 11019798
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||| |||| ||||| |||| ||| |||||||||||||||||||| |||| ||||||    
T  11019856 cttctatggtgtagtcaaaaaaatgatttttttgaaaaagtcattttatttagccaata 11019798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 21009567 - 21009604
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  21009567 ttctacggtgcagtcaggaaactgacttttttaaaaaa 21009604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 11357146 - 11357186
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||| |||||||||| |||||||||||||| ||||||    
T  11357146 cttctacgatgcagtcagacaactgacttttttggaaaagt 11357186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 22622487 - 22622523
Alignment:
Q  114 tacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  22622487 tacggtgcagtcaggaaactgatttttttgaaaaagt 22622523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 34133369 - 34133329
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| |||||||| || ||||||||||||||||||||||    
T  34133369 cttctaaggtgcagttaggaaactgacttttttgaaaaagt 34133329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 40640299 - 40640351
Alignment:
Q  110 cttctacggtgcagtcagaaaactgactttt-ttgaaaaagtcattttgttta 161  Q
    |||||||||| |||||| |||| |||||||| |||||||||| ||||||||||    
T  40640299 cttctacggttcagtcaaaaaattgactttttttgaaaaagttattttgttta 40640351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 42505840 - 42505880
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  42505840 cttctacggtgcagtcaggaaattgacttttttgataaagt 42505880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 3859433 - 3859366
Alignment:
Q  100 tatatgggcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||| |||||||||||||||||||| || ||||| |||||||||||||||| |||||||||| ||||||    
T  3859433 tataagggcacttctacggtgcagttaggaaact-acttttttgaaaaagttattttgtttagccaata 3859366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 6446175 - 6446239
Alignment:
Q  104 tgggcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||  |||| |||| ||||||    
T  6446175 tgggcacttctacggtgcagtcaagaaactgacttttttaaaaaagttgttttttttagccaata 6446239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 16446646 - 16446686
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  16446646 cttctacggtgcagtcaggaaactgacttttttgaaaaagt 16446686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 33906629 - 33906589
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  33906629 cttctacagtgcagtcagaaaactgacttttttgaaaaagt 33906589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 43643366 - 43643406
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  43643366 cttctatggtgcagtcagaaaactgacttttttgaaaaagt 43643406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 30650904 - 30650955
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    |||||||||||||||||  ||| |||||||||||||||||| ||||||||||    
T  30650904 cttctacggtgcagtcaagaaattgacttttttgaaaaagttattttgttta 30650955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 35859352 - 35859313
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  35859352 ttctacggtgcagtcaggaaactgacttttttgaaaaagt 35859313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 18756343 - 18756400
Alignment:
Q  117 ggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataa 174  Q
    ||||||||||||||| ||| ||||| |||||||| |||||||||| ||||||| ||||    
T  18756343 ggtgcagtcagaaaattgattttttggaaaaagttattttgtttagccaataatataa 18756400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 41190621 - 41190670
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtt 159  Q
    ||||||||||| |||||||||||| |||||||  ||||||||||||||||    
T  41190621 cttctacggtgtagtcagaaaactaactttttaaaaaaagtcattttgtt 41190670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 1872581 - 1872645
Alignment:
Q  109 acttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    ||||||| |||| |||||  ||| ||||||||||||||||||||||||||| | ||| |||||||    
T  1872581 acttctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttgttcagccattaacata 1872645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 4108588 - 4108648
Alignment:
Q  114 tacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaataacataa 174  Q
    ||||||| ||||| |||| |||||||||||||||||| ||||||||||  |||||| ||||    
T  4108588 tacggtgaagtcaaaaaattgacttttttgaaaaagttattttgtttagtcaataatataa 4108648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 7291099 - 7291047
Alignment:
Q  109 acttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    |||||||||||||||| |||||| | |||||||||||||| | ||||||||||    
T  7291099 acttctacggtgcagttagaaaattaacttttttgaaaaaattattttgttta 7291047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 3038785 - 3038726
Alignment:
Q  109 acttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaaccaata 168  Q
    |||| ||| |||||||||||||| |||||||||| ||||| | |||||||||| ||||||    
T  3038785 acttttacagtgcagtcagaaaattgacttttttaaaaaaattattttgtttagccaata 3038726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 23176460 - 23176507
Alignment:
Q  114 tacggtgcagtcagaaaactgacttttttgaaaaagtcattttgttta 161  Q
    ||||||| ||| |||||| |||||||||||||||||| ||||||||||    
T  23176460 tacggtgaagttagaaaattgacttttttgaaaaagttattttgttta 23176507  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 30654355 - 30654394
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  30654355 ttctacggtgcagtcaggaaactgatttttttgaaaaagt 30654394  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 34463953 - 34463906
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttg 157  Q
    ||||||||||||||||| |||| | |||||||| ||||||||||||||    
T  34463953 cttctacggtgcagtcataaaattaacttttttaaaaaagtcattttg 34463906  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 1149403 - 1149441
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  1149403 cttctacggtgcagtcaggaaattgacttttttgaaaaa 1149441  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 5018611 - 5018553
Alignment:
Q  105 gggcacttctacggtgcagtcagaaaactgacttttttgaaaaagtcattttgtttaac 163  Q
    ||||||||||| |||||| |||  ||| |||||||||||||||||| ||||| ||||||    
T  5018611 gggcacttctatggtgcaatcacgaaattgacttttttgaaaaagttattttatttaac 5018553  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 41362841 - 41362803
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  41362841 cttctatggtgcagtcaggaaactgacttttttgaaaaa 41362803  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 1953760 - 1953797
Alignment:
Q  111 ttctacggtgcagtcagaaaactgacttttttgaaaaa 148  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  1953760 ttctacggtgcagtcaggaaactgatttttttgaaaaa 1953797  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 1205346 - 1205306
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    ||||||||||| |||||||||| |||||||||| |||||||    
T  1205346 cttctacggtgtagtcagaaaattgacttttttaaaaaagt 1205306  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 4132457 - 4132497
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||| ||||||||||||||| ||||||    
T  4132457 cttctatggtgcagtcagcaaactgacttttttggaaaagt 4132497  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 5299717 - 5299757
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||  ||||||||||||||||||||||    
T  5299717 cttctatggtgcagtcatgaaactgacttttttgaaaaagt 5299757  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 7890728 - 7890768
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||| ||||  ||||||||||||||||||||||    
T  7890728 cttctacggtgcggtcatgaaactgacttttttgaaaaagt 7890768  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 8803591 - 8803627
Alignment:
Q  114 tacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  8803591 tacggtgcagtcaggaaattgacttttttgaaaaagt 8803627  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 9864590 - 9864550
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| |||||||| || ||||||||||||||||||||||    
T  9864590 cttctaaggtgcagttaggaaactgacttttttgaaaaagt 9864550  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 37970290 - 37970330
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||| ||||||||||| ||| ||||||||||||||||||    
T  37970290 cttctatggtgcagtcaggaaagtgacttttttgaaaaagt 37970330  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 38644393 - 38644357
Alignment:
Q  114 tacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||  ||||||||||||||||||||||    
T  38644393 tacggtgcagtcatgaaactgacttttttgaaaaagt 38644357  T

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Target: scaffold0312 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 8233 - 8273
Alignment:
Q  133 tgacttttttgaaaaagtcattttgtttaaccaataacata 173  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  8233 tgacttttttgaaaaagtcattttatttaaccaataacata 8273  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 145780 - 145820
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  145780 cttctacggtgcagtcaggaaattgacttttttgaaaaagt 145820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 8307 - 8267
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  8307 cttctacggtgcagtcaggaaattgacttttttgataaagt 8267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 44376 - 44336
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||| ||||||||  ||||||||||||||||||||||    
T  44376 cttctacgatgcagtcaacaaactgacttttttgaaaaagt 44336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 154411 - 154451
Alignment:
Q  110 cttctacggtgcagtcagaaaactgacttttttgaaaaagt 150  Q
    |||||||| ||||||||  ||||||||||||||||||||||    
T  154411 cttctacgatgcagtcaacaaactgacttttttgaaaaagt 154451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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