View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17971_high_5 (Length: 537)
Name: NF17971_high_5
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 7 - 521
Target Start/End: Complemental strand, 41265921 - 41265418
Alignment:
| Q |
7 |
gagatgaacaaacagaccacacaaaattggagatgataaaataaaaagatacaaatatttatatcgtttgatcaatgtggcttataaacaataaaagaga |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41265921 |
gagaggaacaaacagaccacacaaaattggagatgataaaataaaaagatacaaatatttatatcgtttgatcaatgtggcttataaacaataaaagaga |
41265822 |
T |
|
| Q |
107 |
ctaatatcttttggaagaagaaatatagaaagagttcataatcaccccgcattttataaactcaaatatgcaaataattagatctgaggatgattatcag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41265821 |
ctaatatcttttggaagaagaaatatagaaagagttcataatcaccccgcattttataaactcaaatatgcaaataattagatctgaggatgattatcag |
41265722 |
T |
|
| Q |
207 |
agaatttggataaacaacaaaaaatgaacagattaaagaagtttgagctaggacataattttgaacacaactcttgtctgtatagtaaaaggttccaacc |
306 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41265721 |
agaatttggataaacaa-aaaaaatgaacagattaaagaagtttgagctaggacataattttgaacacaactcttgtctgcatagtaaaaggttccaacc |
41265623 |
T |
|
| Q |
307 |
tctttgaaatannnnnnnnggtgttcggggttcgaacatcaaaccatacatatattatgtattgtccctgcaatttaatcttgtgtatcggtgatcaatg |
406 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41265622 |
tctttgaaatatattttttggtgttcggggttcaaacat----------atatattatgtattgtccctgcaatttaatcttgtgtatcggtgatcaatg |
41265533 |
T |
|
| Q |
407 |
aataatacaaaacataaagtaaaaaatgtttggggtgtcaaagtacatgcacttaattaaggcatggttccccgaaaacataccacaaaatcacatgaga |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41265532 |
aataatacaaaacataaagtaaaaaatgtttggggtgtcaaagtacatgcacttaattaaggcatggttccccgaaaacataccacaaaatcacatgaga |
41265433 |
T |
|
| Q |
507 |
caagaggcttttatt |
521 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41265432 |
caagaggcttttatt |
41265418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 1120030 - 1120070
Alignment:
| Q |
333 |
ggggttcgaacatcaaaccatacatatattatgtattgtcc |
373 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
1120030 |
ggggttcgaacaccaaactttacatatattatgtattgtcc |
1120070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 50676893 - 50676942
Alignment:
| Q |
326 |
ggtgttcggggttcgaacatcaaaccatacatatattatgtattgtccct |
375 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||| |||||||||||||| |
|
|
| T |
50676893 |
ggtgttcggggttcgaaccccaacccctacatataatatgtattgtccct |
50676942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 373
Target Start/End: Complemental strand, 5117266 - 5117230
Alignment:
| Q |
337 |
ttcgaacatcaaaccatacatatattatgtattgtcc |
373 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
5117266 |
ttcgaacctcaaaccttacatatattatgtattgtcc |
5117230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 23979408 - 23979453
Alignment:
| Q |
326 |
ggtgttcggggttcgaacatcaaaccatacatatattatgtattgt |
371 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
23979408 |
ggtggtcggggtttgaaccccaaaccatacatatattatgtattgt |
23979453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 12126932 - 12126892
Alignment:
| Q |
332 |
cggggttcgaacatcaaaccatacatatattatgtattgtc |
372 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
12126932 |
cggggtttgaacctcaaaccttacatatattatgtattgtc |
12126892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 43826445 - 43826481
Alignment:
| Q |
337 |
ttcgaacatcaaaccatacatatattatgtattgtcc |
373 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
43826445 |
ttcgaacatcataccttacatatattatgtattgtcc |
43826481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University