View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17971_high_52 (Length: 201)
Name: NF17971_high_52
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_high_52 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 3256037 - 3255840
Alignment:
| Q |
1 |
ctacttgtaaaatgttcaactacctgaatgtatcagcagaattatttaatcattttggggaagaaaaagaaaagaaacaaagcaaactacaatttaggaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3256037 |
ctacttgtaaaatgttcaactacttgaatgtatcagcagaattatttaatcattttggggaagaaaaagaaaagaaacaaagcaaactacaatttaggaa |
3255938 |
T |
|
| Q |
101 |
a-atagttctagctgcatcaatctttagaaggctctggagatcctccggcggtgatgcatgatggcataagtcaatatataagaatgctctaagtttg |
197 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3255937 |
agatagttctagctgcatcaatctttagaaggctctggagatcctccggcggtgatgcatgatggcataagtcaatatataagaatgctctaagtttg |
3255840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 5042465 - 5042545
Alignment:
| Q |
61 |
aagaaaaagaaaagaaa-caaagcaaactacaatttaggaaa-atagttctagctgcatcaatctttagaaggctctggag |
139 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||||||| | ||||||| |
|
|
| T |
5042465 |
aagaaaaagaaaagaaaacaaagcaaactacaatctaggaaatatagttccagctgcatcaatctttagaaagttctggag |
5042545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 61 - 201
Target Start/End: Original strand, 5213990 - 5214131
Alignment:
| Q |
61 |
aagaaaaagaaaagaaacaaagcaaactacaatttaggaaa-atagttctagctgcatcaatctttagaaggctctggagatcctccggcggtgatgcat |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||| |||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
5213990 |
aagaaaaagaaaagaaacaaagcaaactacaatctaggaaagatagttccaactgcattaatccatagaaggctctggagaccctccggcggtgatgcat |
5214089 |
T |
|
| Q |
160 |
gatggcataagtcaatatataagaatgctctaagtttggcca |
201 |
Q |
| |
|
||| |||||||||||||| ||| ||||| |||| ||||||| |
|
|
| T |
5214090 |
gatagcataagtcaatatcaaaggatgctttaagcttggcca |
5214131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 18056149 - 18056009
Alignment:
| Q |
61 |
aagaaaaagaaaagaaacaaagcaaactacaatttaggaaa-atagttctagctgcatcaatctttagaaggctctggagatcctccggcggtgatgcat |
159 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||| | |||||||| ||||||| |
|
|
| T |
18056149 |
aagaaaaagaaaagaaacaa-gcaaactacaatctaggaaagatagttccagctgcatcaatctttagaaggctttggagaccttccggcggcgatgcat |
18056051 |
T |
|
| Q |
160 |
gatggcataagtcaatatataagaatgctctaagtttggcca |
201 |
Q |
| |
|
|||| || || |||||| | || ||||| |||| ||||||| |
|
|
| T |
18056050 |
gatgacaaaaaacaatatctgaggatgctttaagcttggcca |
18056009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 25757848 - 25757734
Alignment:
| Q |
64 |
aaaaagaaaagaaacaaagcaaactacaatttaggaaa-atagttctagctgcatcaatctttagaaggctctggagatcctccggcggtgatgcatgat |
162 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||||| ||||||||||||||| |||| ||||||| | |||||||||| |
|
|
| T |
25757848 |
aaaacgaaaagaaacaaagaaaactacaatctaggaaagatagttccagctgcatccatctttagaaggctcatgagaccctccggagaagatgcatgat |
25757749 |
T |
|
| Q |
163 |
ggcataagtcaatat |
177 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
25757748 |
ggcaaaagtcaatat |
25757734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University