View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17971_high_7 (Length: 523)
Name: NF17971_high_7
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_high_7 |
 | |
|
| [»] scaffold1152 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Complemental strand, 34200081 - 34199586
Alignment:
| Q |
18 |
aaatgaatgcatgtttaactactatatcacatacacttcagattaaaggtgtgtctgatgtctgatacgtcgatatctaacaccgacacaacaccaacaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34200081 |
aaatgaatgcatgtttaactactatatcacatagacttcagattaaaggtgtgtctgatgtttgatacgtcgatatctaacaccaacacaacaccaacaa |
34199982 |
T |
|
| Q |
118 |
gcaataaatagcgatattaaattgatgaaatgaaacatgcaagcaaaaatgaaaatagtagaatggaatagaatacctagaagaacgtctttcagattcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34199981 |
gcaataaatagcgatattaaattgatgaaatgaaacatgcaagcaaaaatgaaaatagtagaatggaatagaatacctagaagaacgtctttcagattcg |
34199882 |
T |
|
| Q |
218 |
ttggatggtaacgagtttttcttgacggaggggcgcggttttggtgttttcttgaggttacaagaaagctttaacaaaccaagcttatgcattctctcag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34199881 |
ttggatggtaacgagtttttcttgacggaggggcgcggttttggtgttttcttgaggttaccagaaagctttaacaaaccaagcttatgcattctctcag |
34199782 |
T |
|
| Q |
318 |
cgttctctttcatcctttgttccctaatccgttcgtaatgcgatgatgaacctgaaacgacaacaccttcgtcaccgttagttttctccgttttggtttc |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34199781 |
cgttctcttccatcctttgttccctaatccgttcgtaatgcgatgatgaacctgaaacgacaacaccttcgtcaccgttagttttctccgttttggtttc |
34199682 |
T |
|
| Q |
418 |
ggtgatg---gcgccgccatcttcaccgtcagaagaagctgattcttcttcttcgcttctccttctacgacgagttcccattctctcacactctct |
510 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34199681 |
ggtggtggctgcgccgccatcttcaccgtcagaagaagctgattcttcttcttcgcttctccttctacgacgagttcccattctctcacactctct |
34199586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1152 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: scaffold1152
Description:
Target: scaffold1152; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 258 - 513
Target Start/End: Complemental strand, 2027 - 1772
Alignment:
| Q |
258 |
ttggtgttttcttgaggttacaagaaagctttaacaaaccaagcttatgcattctctcagcgttctctttcatcctttgttccctaatccgttcgtaatg |
357 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2027 |
ttggtgttttcttgaggttaccagaaagctttaacaatccaagcttatgcattctctcagcgttctctttcatcctttgttccctaatctattcgtaata |
1928 |
T |
|
| Q |
358 |
cgatgatgaacctgaaacgacaacaccttcgtcaccgttagttttctccgttttggtttcggtgatggc---gccgccatcttcaccgtcagaagaagct |
454 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||| ||||||| ||||||||||||||||| |||| || ||||||||||| || |||||||| | |
|
|
| T |
1927 |
tgatgatgaacccaaaactacaacacctttgtcaccgtcagttttcgccgttttggtttcggtggtggctgggctgccatcttcacggttagaagaagtt |
1828 |
T |
|
| Q |
455 |
gattcttcttcttcgcttctccttctacgacgagttcccattctctcacactctctctg |
513 |
Q |
| |
|
|| |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
1827 |
ga---ttcttcttcggttctccttcgacgacgagttcccattctcacacactctctctg |
1772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 337 - 510
Target Start/End: Complemental strand, 40812248 - 40812075
Alignment:
| Q |
337 |
ttccctaatccgttcgtaatgcgatgatgaacctgaaacgacaacaccttcgtcaccgttagttttctccgttttggtttc---ggtgatggcgccgcca |
433 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||||||| |||| | |||| |||| |
|
|
| T |
40812248 |
ttccctaatctgttcgtaatgtgatgatgaaccagaaacggcaacaccttcgtcaccgtcagttttcgccgttttggtttcgttggtggttgcgctgcca |
40812149 |
T |
|
| Q |
434 |
tcttcaccgtcagaagaagctgattcttcttcttcgcttctccttctacgacgagttcccattctctcacactctct |
510 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
40812148 |
tcttcaccgtcagaagaagctga---ttcttcttcggttctccttcgacgacgagttcccattctcacacactctct |
40812075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University