View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_13 (Length: 483)
Name: NF17971_low_13
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_13 |
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| [»] scaffold0417 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 195 - 469
Target Start/End: Original strand, 16317555 - 16317829
Alignment:
| Q |
195 |
aaaatcttcaagatgctttaatgaaggaaaattccaatggaatttgggaaagaaaagctcctgtgtgaaaactactactaaagtttttcacaaagataga |
294 |
Q |
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| T |
16317555 |
aaaagcttcaagatgctttaatgaaggaaaattccaatggaatttgggaaagaaaagctcctgggtgaaaactactgctaaagtttttcacaaagataga |
16317654 |
T |
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| Q |
295 |
ctatctgataagtattatgatatgcagaaggagcataaagtccttcaaaagctgatgacagactgctttcttcagaacggaggtggtactgacactatgt |
394 |
Q |
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| T |
16317655 |
ctatctgataagtattatgatatgtagaaggagcataaagtccttcagaaactgattacagattgctttcttcataatggaggtggtactgacactatgt |
16317754 |
T |
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| Q |
395 |
caatagaccaaagagtctttctttatttccaaatcaggtttgagaaggtatatttgcaaaggtatatgttccatt |
469 |
Q |
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| T |
16317755 |
caatagaccacaaagtctttctttattttcaaatcatgtttgagaaggtatatttgccaaggtatatgttccatt |
16317829 |
T |
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Target: scaffold0417 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 441
Target Start/End: Original strand, 15008 - 15174
Alignment:
| Q |
275 |
aagtttttcacaaagatagactatctgataagtattatgatatgcagaaggagcataaagtccttcaaaagctgatgacagactgctttcttcagaacgg |
374 |
Q |
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| T |
15008 |
aagtttttcacaaagggagaaaatttgataagtactatgatatgtagaatgaccattgaatgcttcataagctgttgatagactgctttcttcaaaaggg |
15107 |
T |
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| Q |
375 |
aggtggtactgacactatgtcaatagaccaaagagtctttctttatttccaaatcaggtttgagaag |
441 |
Q |
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| T |
15108 |
aggtggtactgatactatgtcagttgaacatagagtctttctcaattgcctaatcatgtttgagaag |
15174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 14855 - 14930
Alignment:
| Q |
111 |
gatgggttttcctaagtttacaaaaacaaagattaggtcatctgtaatggaaattccaatcaccattacggaagaa |
186 |
Q |
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| T |
14855 |
gatgggattgcctgagtttacacaaacaaagattagatcagtagtaatggggattccaatcaccattacagaagaa |
14930 |
T |
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