View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_16 (Length: 450)
Name: NF17971_low_16
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 318 - 435
Target Start/End: Original strand, 4975040 - 4975158
Alignment:
| Q |
318 |
tgttgttagaatcttatttggtctcattttagttttgaaaatcaaggtttaaagtgatacgtaatgttgaaactatattcttttgaaattgagttgagtt |
417 |
Q |
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| T |
4975040 |
tgttgttagaaacttatttggtctcattttagttttgaaaatcaaggtttaaagtgatacgtaatgttgaaactatattcttttgaaattgagttgagtt |
4975139 |
T |
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| Q |
418 |
g-tgtgtagaagtgtttat |
435 |
Q |
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| T |
4975140 |
gttgtgtagaagtgtttat |
4975158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 23484553 - 23484412
Alignment:
| Q |
24 |
ctaaacttatttattgatcggagcattttcaccg-cgaccaccgtgtcggagctaacttccaccgcttcgggaatcgtctccgccgcgccggaaaaacgt |
122 |
Q |
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| T |
23484553 |
ctaaccttatttcttgatcggagcattttcaccggcgaccaccgtgccggagctaacatccaccgcgtctggaatcatgtccgccacgccggaaag-cat |
23484455 |
T |
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| Q |
123 |
gattgtgaccatttcctatcatttccttctttttggtgagttt |
165 |
Q |
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| T |
23484454 |
aattggaaccatttcatatcttttccttctttttggcgagttt |
23484412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 4975011 - 4975046
Alignment:
| Q |
221 |
gattttggcgaaatgcataaaattagacatgttgtt |
256 |
Q |
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| T |
4975011 |
gattttggtgaaatgcataaaattagacatgttgtt |
4975046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 42193596 - 42193741
Alignment:
| Q |
20 |
atccctaaacttatttattgatcggagcattttcacc-gcgaccaccgtgtcggagctaacttccaccgcttcgggaatcgtctccgccgcgccggaaaa |
118 |
Q |
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| T |
42193596 |
atccctaaacttaattcttgatcgaaacattttcacctgcgaccaccgtgctggagctaacctccaccgcgtcgagaatcgtatccttcgtgccg-aaaa |
42193694 |
T |
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| Q |
119 |
acgtgattgtgaccatttcctatcatttccttctttttggtgagttt |
165 |
Q |
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| T |
42193695 |
acgtgattgcgaccatttcacatcctttccttctttttggtgagttt |
42193741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 42194443 - 42194523
Alignment:
| Q |
203 |
tttaattatttattttcggattttggcgaaatgcataaaattagacatgttgtttttatcaaattgatggttttaagcttc |
283 |
Q |
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| T |
42194443 |
tttaattatttatttccggattttgtggaaatgcataaaattagacatgttgattttgtcaaattgtttattttaagcttc |
42194523 |
T |
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