View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_17 (Length: 433)
Name: NF17971_low_17
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 1536057 - 1536466
Alignment:
| Q |
1 |
taatgatcaaaagacattgatttaaaacttgacgaaaaacataatataaaatgttagaaca-cacctagtaacatatgattaaagaaacaataaatcaca |
99 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1536057 |
taatggtcaaaagacattgatttaaaacttgaagaaaaacataatataaaatgttagaacaacacctagtaacatatgattaaagaaacaataaatcaca |
1536156 |
T |
|
| Q |
100 |
agacaatcaacacaactttttgtttaaacaattccgtcaagtgtgtctacctctgcgattacagagcaagcaattgcagtttcctatattacttgaatga |
199 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1536157 |
agacaatcaacacaattttttgtttaaacaattcagtcaagtgtgtctacctctgcgattacagagcaagcaattgcagtttcctatattacttgaatga |
1536256 |
T |
|
| Q |
200 |
ttaggatttacatgtaattacatactacatatataataatactgtctagattacaacaatactctaaacagtacgctacgctggctcagctcctttgcct |
299 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
1536257 |
ttaggatttacatgtaattacagactacatatatattaatattgtctagattacaacaatactctaaacagtacgctacgctggctcaactccttcgcct |
1536356 |
T |
|
| Q |
300 |
cttgcccctcttatgtgtctatgctctataccat-nnnnnnntgcataatgcatgtgttgaatcaagattactgacataaaatccaatagtatgtacatt |
398 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1536357 |
cttgcccctcttctgtgtctatgctctataccataaaaaaaatgcataatgcaagtgttgaatcaagattactgacataaaattcaatagtatgtacatt |
1536456 |
T |
|
| Q |
399 |
gtaccaacaa |
408 |
Q |
| |
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||||| |||| |
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| T |
1536457 |
gtaccgacaa |
1536466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 17520291 - 17520205
Alignment:
| Q |
65 |
ctagtaacatatgattaaagaaacaataaatcacaagacaatcaacacaactttttgtttaaacaattccgtcaagtgtgtctacct |
151 |
Q |
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| T |
17520291 |
ctagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaataatttgtttacgcacttcggttaagtgtgtctacct |
17520205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 27407209 - 27407276
Alignment:
| Q |
65 |
ctagtaacatatgattaaagaaacaataaatcacaagacaatcaacacaactttttgtttaaacaatt |
132 |
Q |
| |
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||||||||||| || ||| |||||||| |||||||||||||| ||||||| | |||| ||| |||||| |
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|
| T |
27407209 |
ctagtaacataagaataacgaaacaatgaatcacaagacaataaacacaattatttgattacacaatt |
27407276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 14813889 - 14813975
Alignment:
| Q |
65 |
ctagtaacatatgattaaagaaacaataaatcacaagacaatcaacacaactttttgtttaaacaattccgtcaagtgtgtctacct |
151 |
Q |
| |
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||||||||| | ||||||||||| |||||||| ||||||||| ||||||| |||||||| || ||| | |||||||||||||| |
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|
| T |
14813889 |
ctagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaatcatttgtttacgcacttcgattaagtgtgtctacct |
14813975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 15260884 - 15260970
Alignment:
| Q |
65 |
ctagtaacatatgattaaagaaacaataaatcacaagacaatcaacacaactttttgtttaaacaattccgtcaagtgtgtctacct |
151 |
Q |
| |
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||||||||| | ||||||||||| |||||||| ||||||||| ||||||| |||||||| || ||| | |||||||||||||| |
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| T |
15260884 |
ctagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaatcatttgtttacgcacttcgattaagtgtgtctacct |
15260970 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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