View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_20 (Length: 386)
Name: NF17971_low_20
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 55690700 - 55691067
Alignment:
| Q |
17 |
aagttcatgaattatgaccaaatgttaatgatataagcattggagtaggcatcattggtactggtgtgttgtatgttggcatctctttctagtttttctt |
116 |
Q |
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| T |
55690700 |
aagttcatgaattatgaccaaatgttaatgatataagcattggagtaggcatcattggtactggtgtgttgtatgttggcatctctttctagtttttctt |
55690799 |
T |
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| Q |
117 |
gtcagcattgggttattcttggcttgctaagctgaatctgtttgaatattttgtgcactccttgtgccttatatgggttgcatttataaattttgctgct |
216 |
Q |
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| T |
55690800 |
gtcagcattgggttattcttggattgctaagctgaatctgtttgaatattttgtgcactccttgtgccttatatgggttgcatttataaattttgctgct |
55690899 |
T |
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| Q |
217 |
tcaa-nnnnnnngatcgatataagtttttatagggaaatattaatagttaaatatttaggagaggaaaaaatgttagtagttgagatttaattttagacc |
315 |
Q |
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| T |
55690900 |
tcaattttttttgatcgatataagtttttatagggaaatattaatagttaaatatttaggagaggaaaaaatgttagtagttgagatttaattttagacc |
55690999 |
T |
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| Q |
316 |
tcctgcatataacacatttggtgccctaatccagattatgcatctgatagtttttggttttacatatt |
383 |
Q |
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| T |
55691000 |
tcctgcatataacacatttggtgccctaatccagattatgcatctgatagtttttggttttacatatt |
55691067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 20364491 - 20364543
Alignment:
| Q |
284 |
aaatgttagtagttgagatttaattttagacctcctgcatataacacatttgg |
336 |
Q |
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| T |
20364491 |
aaatgttagtagcagggattgaattctagacctcctgcatataactcatttgg |
20364543 |
T |
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