View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17971_low_21 (Length: 368)
Name: NF17971_low_21
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 38321676 - 38322019
Alignment:
| Q |
18 |
gttgctgtccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttactggaaaatcccaacttgatatttacttagctgagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38321676 |
gttgctgtccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttactggaaaatcccaacttgatatttacttagctgagt |
38321775 |
T |
|
| Q |
118 |
cacatttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcgagactt |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38321776 |
caaatttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcgagactt |
38321875 |
T |
|
| Q |
218 |
gttaagtgttcccgttaacactatcgcttctgatttggatttttgcatgggcttgcacgtttttaacaagtataaagatcgtatgttaccgatgaatttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38321876 |
gttaagtgttcccgttaacactatcgcttctgatttggatttttgcataggcttgcacgtttttaacaagtataaagatcgtatgttaccgatgaatttg |
38321975 |
T |
|
| Q |
318 |
gatgctagattttgtactcgcaattggttgtacaattttcttcg |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38321976 |
gatgctagattttgtactcgcaattggttgtacaattttgttcg |
38322019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 26 - 356
Target Start/End: Original strand, 38300936 - 38301272
Alignment:
| Q |
26 |
ccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttactggaa------aatcccaacttgatatttacttagctgagtca |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||| | ||||||||||||| || |||| |||||||| ||||||||| ||||||| |
|
|
| T |
38300936 |
ccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttactgaaactgggaaatctgaacttgatgtttacttagatgagtca |
38301035 |
T |
|
| Q |
120 |
catttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcgagacttgt |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
38301036 |
aatttggattttcgttgtgatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgt |
38301135 |
T |
|
| Q |
220 |
taagtgttcccgttaacactatcgcttctgatttggatttttgcatgggcttgcacgtttttaacaagtataaagatcgtatgttaccgatgaatttgga |
319 |
Q |
| |
|
||||||||||| ||| ||| ||||||| ||||| || ||||||||||||| | ||| |||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
38301136 |
taagtgttcccattaccaccgtcgcttccgattttgagttttgcatgggctcacgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtgga |
38301235 |
T |
|
| Q |
320 |
tgctagattttgtactcgcaattggttgtacaatttt |
356 |
Q |
| |
|
||||| | |||||||||| |||||| |||||||| |
|
|
| T |
38301236 |
aactagaatgtgtactcgcacctggttgcacaatttt |
38301272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 28 - 355
Target Start/End: Original strand, 38306838 - 38307171
Alignment:
| Q |
28 |
ttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttac------tggaaaatcccaacttgatatttacttagctgagtcaca |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||| | ||||||||||| || ||| || ||||||||| ||||||||| ||||||| | |
|
|
| T |
38306838 |
ttttcacttgtgaaatacaataggaattgaaaatgaaacatcaacagcttgttaccgaaactgaaaagtctcaacttgatgtttacttagatgagtcaga |
38306937 |
T |
|
| Q |
122 |
tttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcgagacttgtta |
221 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||| ||||| | ||||||||| |
|
|
| T |
38306938 |
tttgggttttctttgtaatgaagatatggatgtattacaatggtggaagagtaataatgatcgatatccagatctatcaatactggcttgtgacttgtta |
38307037 |
T |
|
| Q |
222 |
agtgttcccgttaacactatcgcttctgatttggatttttgcatgggcttgcacgtttttaacaagtataaagatcgtatgttaccgatgaatttggatg |
321 |
Q |
| |
|
||||||||| ||| |||| | ||||||||||| || ||||||||||||| | ||| |||||||||||||||||||||||||| |||||| || |||| |
|
|
| T |
38307038 |
agtgttcccattaccactgtggcttctgattttgaattttgcatgggctcacgcgtgtttaacaagtataaagatcgtatgttgccgatggatgtggaaa |
38307137 |
T |
|
| Q |
322 |
ctagattttgtactcgcaattggttgtacaattt |
355 |
Q |
| |
|
||||| ||||| |||||| |||| |||||||||| |
|
|
| T |
38307138 |
ctagaatttgtgctcgcagttggctgtacaattt |
38307171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 38326388 - 38326726
Alignment:
| Q |
18 |
gttgctgtccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttactggaaaatcccaacttgatatttacttagctgagt |
117 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| |||||| | || |||||||||||||| || ||||||||| ||||||| | ||| | |
|
|
| T |
38326388 |
gttgctttccttttcacttgtgaaatgtaataggaattgaaaatgcaccatcaacaacttgttactggaaagtctcaacttgatgtttacttggatgaat |
38326487 |
T |
|
| Q |
118 |
cacatttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcgagactt |
217 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||| ||||||||||||| ||||| |||||| | ||||| |
|
|
| T |
38326488 |
caagtttggattttcgttgttatgaagacatggatgtattagaatggtggaagagtaattataattgatttccagatctatcaattttggcttgtgactt |
38326587 |
T |
|
| Q |
218 |
gttaagtgttcccgttaacactatcgcttctgatttggatttttgcatgggcttgcacgtttttaacaagtataaagatcgtatgttaccgatgaatttg |
317 |
Q |
| |
|
||||||||||||| || |||| |||| ||||||||||| ||||||||||| | ||| ||| | ||||||||||| | |||| | || |||||| || |
|
|
| T |
38326588 |
gttaagtgttcccattgccactgtcgcatctgatttggaattttgcatgggtgcacgcgtatttgaaaagtataaagaccttatgctgcctatgaatgtg |
38326687 |
T |
|
| Q |
318 |
gatgctagattttgtactcgcaattggttgtacaatttt |
356 |
Q |
| |
|
|| || ||| | |||||| ||| |||||||||||||||| |
|
|
| T |
38326688 |
gaagccagaatctgtacttgcagttggttgtacaatttt |
38326726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 38309571 - 38309914
Alignment:
| Q |
19 |
ttgctgtccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttactggaa------aatcccaacttgatatttacttagc |
112 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||| || |||| ||||||||| ||||||||| |
|
|
| T |
38309571 |
ttgctttccttttcacgtgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatctcaacttgatgtttacttaga |
38309670 |
T |
|
| Q |
113 |
tgagtcacatttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcga |
212 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||| | |
|
|
| T |
38309671 |
tgagtcaaatttggattttcattgttatgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattctggcctgc |
38309770 |
T |
|
| Q |
213 |
gacttgttaagtgttcccgttaacactatcgcttctgatttggatttttgcatgggcttgcacgtttttaacaagtataaagatcgtatgttaccgatga |
312 |
Q |
| |
|
|||||||||||| ||||| ||| |||| |||| |||||||| || ||||||||||||| | || |||||||| ||||||||||||||||| || | | |
|
|
| T |
38309771 |
gacttgttaagttttcccattaccactgtcgcatctgattttgagttttgcatgggctcacgtgtgtttaacaaatataaagatcgtatgttgccaaata |
38309870 |
T |
|
| Q |
313 |
atttggatgctagattttgtactcgcaattggttgtacaatttt |
356 |
Q |
| |
|
|| |||| ||||| | |||||||||| ||||||| |||||||| |
|
|
| T |
38309871 |
atgtggaaactagaatatgtactcgcacttggttgcacaatttt |
38309914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 38317582 - 38317925
Alignment:
| Q |
19 |
ttgctgtccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttactg------gaaaatcccaacttgatatttacttagc |
112 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
38317582 |
ttgctttccttttcacgtgtgaaatataataggaattgaaagtgcaccaacggcagcttgttactgaaactagaaaatctcaacttgatgtttacttaga |
38317681 |
T |
|
| Q |
113 |
tgagtcacatttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcga |
212 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||| | |
|
|
| T |
38317682 |
tgagtcaaatttggattttcattgttatgaagatatggatgtattacaatggtggaagagaaataataatcgatttccggatctatcaatattagcttgc |
38317781 |
T |
|
| Q |
213 |
gacttgttaagtgttcccgttaacactatcgcttctgatttggatttttgcatgggcttgcacgtttttaacaagtataaagatcgtatgttaccgatga |
312 |
Q |
| |
|
|||||||||||||||||| || |||| | |||||||||| || ||||||||||| | | || |||||||||||| ||||||||| | | || | || |
|
|
| T |
38317782 |
gacttgttaagtgttcccattgccactgttgcttctgattctgaattttgcatgggttcacgtgtctttaacaagtatgaagatcgtacgctgcccacga |
38317881 |
T |
|
| Q |
313 |
atttggatgctagattttgtactcgcaattggttgtacaatttt |
356 |
Q |
| |
|
|| |||| ||||| | |||||||||| |||||| ||||||||| |
|
|
| T |
38317882 |
atgtggaaactagaatctgtactcgcagttggttatacaatttt |
38317925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 38314172 - 38314515
Alignment:
| Q |
19 |
ttgctgtccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttact------ggaaaatcccaacttgatatttacttagc |
112 |
Q |
| |
|
||||| || |||| ||||||||||||||||| |||||||||| |||||| | |||||||||||| ||||| || |||||||| ||||||| | |
|
|
| T |
38314172 |
ttgctttctttttaacttgtgaaatataatatgaattgaaaatgcaccatcaacagcttgttactaaaactggaaagtctgaacttgatgtttactttga |
38314271 |
T |
|
| Q |
113 |
tgagtcacatttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcga |
212 |
Q |
| |
|
|||||| ||||| ||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| | |
|
|
| T |
38314272 |
cgagtcagatttgaattttggttcttatgaagatatggatgtattacaatggtggaagagtaattcaaatcgatttccagatctatcaatattggcttgc |
38314371 |
T |
|
| Q |
213 |
gacttgttaagtgttcccgttaacactatcgcttctgatttggatttttgcatgggcttgcacgtttttaacaagtataaagatcgtatgttaccgatga |
312 |
Q |
| |
|
|||||||||||||||||| || ||| | ||||||||||| || ||||||||||||| | || || ||||||||||||||||| |||||||| ||| |
|
|
| T |
38314372 |
gacttgttaagtgttcccattgccacagtggcttctgattttgaattttgcatgggctcacgtgtgttaaacaagtataaagatcgcatgttaccaatgg |
38314471 |
T |
|
| Q |
313 |
atttggatgctagattttgtactcgcaattggttgtacaatttt |
356 |
Q |
| |
|
|| |||| ||||| |||| ||||||| |||| ||||||||||| |
|
|
| T |
38314472 |
atgtggaaactagaatttgcactcgcagttggctgtacaatttt |
38314515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 25 - 356
Target Start/End: Complemental strand, 38849748 - 38849411
Alignment:
| Q |
25 |
tccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttac------tggaaaatcccaacttgatatttacttagctgagtc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| |||||| || ||||||||| ||||||||| |||||| |
|
|
| T |
38849748 |
tccttttcacttgtgaaatgtaataggaattgaaagtgcaccatcagcagcttgttaccaaaactggaaagtctcaacttgatgtttacttagatgagtc |
38849649 |
T |
|
| Q |
119 |
acatttggattttcgttgttatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcgagacttg |
218 |
Q |
| |
|
| |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||| | |||||| |
|
|
| T |
38849648 |
agttttggattttcgttgttatgcagaaatggatgtattacaatggtggaagagtaataatgatcgatttccggatctatcaatattggcctgcgacttg |
38849549 |
T |
|
| Q |
219 |
ttaagtgttcccgttaacactatcgcttctgatttggatttttgcatgggcttgcacgtttttaacaagtataaagatcgtatgttaccgatgaatttgg |
318 |
Q |
| |
|
|||||||||||| || | || | |||||||||| || ||||||||||||| | || |||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
38849548 |
ttaagtgttcccattgccgctgtagcttctgattctgaattttgcatgggctcacgtgtctttaacaagtataaagatcgtatgttgccgatgaatgtgg |
38849449 |
T |
|
| Q |
319 |
atgctagattttgtactcgcaattggttgtacaatttt |
356 |
Q |
| |
|
| |||||| |||||||||||| |||||||||||||||| |
|
|
| T |
38849448 |
aagctagaatttgtactcgcagttggttgtacaatttt |
38849411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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