View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_24 (Length: 341)
Name: NF17971_low_24
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 34807633 - 34807309
Alignment:
| Q |
1 |
acaggtagttgtgaacttgtgattgcaaaatcaaaatcaaaatttataacaattccggatataaactttgttattagaaatcagacttgtcaaacttgag |
100 |
Q |
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| T |
34807633 |
acaggtagttgtgaacttgtgattgcaaaatcaaaatcaaaatttataacaattccggatataaactttgttattagaaatcagacttgtcaaacttgag |
34807534 |
T |
|
| Q |
101 |
tttag-acctgtttggataattaacttaactaaacgcttataagcagaaatgttgatcatataagtgcttatatataaggcttattttcctgataataag |
199 |
Q |
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| T |
34807533 |
tttaggacctgtttggataattaacttaactaaacgcttataagcagaaatgttgatcatataagtgcttatatataaggcttattttcctgataataag |
34807434 |
T |
|
| Q |
200 |
taatagccatcaatggaaagatcaaaattaaattgcaaatttaataatagtcattgaagaagtaaatataccatacctgtggttgatgggctacaaaagc |
299 |
Q |
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| T |
34807433 |
taatagccatcaatggaaagatcaaaattaaattgaaaatttaataatagtcattgaagaagtaaatataccatacctgtggttgatgggcaacaaaagc |
34807334 |
T |
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| Q |
300 |
cattttattaaaccgcctttaaact |
324 |
Q |
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| T |
34807333 |
cattttattaaaccgcctttaaact |
34807309 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 34563144 - 34563199
Alignment:
| Q |
122 |
aacttaactaaacgcttataagcagaaatgttgatcatataagtgcttatatataag |
178 |
Q |
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| T |
34563144 |
aacttaattaaacgcttata-gcataaacatttatcatataagtgcttatatataag |
34563199 |
T |
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