View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_27 (Length: 331)
Name: NF17971_low_27
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 35622270 - 35622582
Alignment:
| Q |
1 |
atttccatgaagagtttcggttaatataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaagatactcaacaattccaactcggaatcgcca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35622270 |
atttccatgaagagtttcggttaatataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaaaatactcaacaattccaactcggaatcgcca |
35622369 |
T |
|
| Q |
101 |
tttggcgctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcagagtaaatccaaaca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622370 |
tttggcgctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcagagtaaatccaaaca |
35622469 |
T |
|
| Q |
201 |
ttggtggataagattataagcatggaagttattgacattgagacacaagaaaatattaggacttttttccgaccgaaagacgagtcagctaatgctgcaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622470 |
ttggtggataagattataagcatggaagttattgacattgagacacaagaaaatattaggacttttttccgaccgaaagacgagtcagctaatgctgcaa |
35622569 |
T |
|
| Q |
301 |
gaaaggaagaacc |
313 |
Q |
| |
|
||||||||||||| |
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| T |
35622570 |
gaaaggaagaacc |
35622582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 34263352 - 34263659
Alignment:
| Q |
1 |
atttccatgaagagtttcggttaatataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaagatactcaacaattccaactcggaatcgcca |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||| ||||||||| | |||||||| |
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|
| T |
34263352 |
atttccaagaagagtttcggttaatataagcgaaaccaggtaaacacatgtatcccattgtgaaagtaaaatactcaagaattccaaccctaaatcgcca |
34263451 |
T |
|
| Q |
101 |
tttggcgctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcagagtaaatccaaaca |
200 |
Q |
| |
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|| ||| ||||||||||||||||||||||||||||||| || | || || || ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34263452 |
ttctgcgttaactttctcggtaagcaaaacaagaacacacgtggcaatggatgaacgccagaaaccgatcaagaatttcaaggcagagtaaatccaaaca |
34263551 |
T |
|
| Q |
201 |
ttggtggataagattataagcatggaagttattgacattgagacacaagaaaatattaggacttttttccgaccgaaagacgagtcagctaatgctgcaa |
300 |
Q |
| |
|
|| ||||| |||||||| || ||||||||||||||||| ||||||||||| | || | ||||| ||||| ||||| || |||||||||||||||| |
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| T |
34263552 |
ttagtggaaaagattatcagaatggaagttattgacatcagaacacaagaaaagaataacatgttttttcgaccaaaagatgaatcagctaatgctgcaa |
34263651 |
T |
|
| Q |
301 |
gaaaggaa |
308 |
Q |
| |
|
|||||||| |
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|
| T |
34263652 |
gaaaggaa |
34263659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 2 - 313
Target Start/End: Original strand, 14580142 - 14580453
Alignment:
| Q |
2 |
tttccatgaagagtttcggttaatataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaagatactcaacaattccaactcggaatcgccat |
101 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
14580142 |
tttccaagaagagtttcggttaatataagcaaaaccaggtaaagacatgtaccccattgtgaaagtaaaatactcaacaattccaactctaaatcgccat |
14580241 |
T |
|
| Q |
102 |
ttggcgctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcagagtaaatccaaacat |
201 |
Q |
| |
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| || ||||||||||| || ||||||||||||||||||||||| || || || ||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
14580242 |
tcagcactaactttctcagttagcaaaacaagaacacatgtaccaatagacgaacgccagaaaccaatcaagaatttcatagcggagtaaatccaaacat |
14580341 |
T |
|
| Q |
202 |
tggtggataagattataagcatggaagttattgacattgagacacaagaaaatattaggacttttttccgaccgaaagacgagtcagctaatgctgcaag |
301 |
Q |
| |
|
|||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||| | ||| | ||| || ||||||||||||||||| |
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|
| T |
14580342 |
tggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaagattagcatgttttttctaccaatagatgaatcagctaatgctgcaag |
14580441 |
T |
|
| Q |
302 |
aaaggaagaacc |
313 |
Q |
| |
|
||| ||||||| |
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|
| T |
14580442 |
aaaaaaagaacc |
14580453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 2 - 313
Target Start/End: Complemental strand, 14543445 - 14543134
Alignment:
| Q |
2 |
tttccatgaagagtttcggttaatataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaagatactcaacaattccaactcggaatcgccat |
101 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
14543445 |
tttccaagaagagtttcggttaatataagcaaaaccaggtaaagacatgtaccccattgtgaaagtaaaatactcaacaattccaactctaaatcgccat |
14543346 |
T |
|
| Q |
102 |
ttggcgctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcagagtaaatccaaacat |
201 |
Q |
| |
|
| || ||||||||||| || ||||||||||||||||||||||| || || || ||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
14543345 |
tcagcactaactttctctgttagcaaaacaagaacacatgtacctatagacgaacgccagaaaccaatcaagaatttcattgctgagtaaatccaaacat |
14543246 |
T |
|
| Q |
202 |
tggtggataagattataagcatggaagttattgacattgagacacaagaaaatattaggacttttttccgaccgaaagacgagtcagctaatgctgcaag |
301 |
Q |
| |
|
|||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||| | || | ||| || ||||||||||||||||| |
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| T |
14543245 |
tggttgaaaagattatgagcatggaagttattgacattgagacacaagaaaagattagcatgttttttctgccaatagatgaatcagctaatgctgcaag |
14543146 |
T |
|
| Q |
302 |
aaaggaagaacc |
313 |
Q |
| |
|
||| ||||||| |
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|
| T |
14543145 |
aaaaaaagaacc |
14543134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 10378357 - 10378260
Alignment:
| Q |
108 |
ctaactttctcggtaagcaaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcagagtaaatccaaacattggt |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || || ||||| || ||| | || |||||||||||||| || |||| ||||||||||||||||| |
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|
| T |
10378357 |
ctaactttctcggttagcaaaacaagaacacaagttccaatcgacgaacgcaaaaacccaatcaagaatttaaaaacagaataaatccaaacattggt |
10378260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 10404428 - 10404249
Alignment:
| Q |
26 |
ataagcgaaaccgggtaaagacatgtaccccattgtgaaagtaagatactcaacaattccaactcggaatcgccatttggcgctaactttctcggtaagc |
125 |
Q |
| |
|
|||||| | ||||||||| ||||||||||| | |||||| || ||| ||||| |||||||| ||| | ||| | || |||||||| || || | | |
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|
| T |
10404428 |
ataagctacaccgggtaatgacatgtaccctaatgtgaagcaaaaatattcaacgattccaaccgtgaacctccactcggtactaactttttccgttaac |
10404329 |
T |
|
| Q |
126 |
aaaacaagaacacatgtaccgatcgaggatcgccagaaaccaatcaagaatttcaaggcagagtaaatccaaacattggt |
205 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| || || || | |||||| || || |||||||||||||||||||| |
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|
| T |
10404328 |
aaaacaagaacacatgtaccgatagacgaacgccaaaatccgataaggaatttgaaagccgagtaaatccaaacattggt |
10404249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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