View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_28 (Length: 325)
Name: NF17971_low_28
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 325
Target Start/End: Complemental strand, 46913964 - 46913653
Alignment:
| Q |
14 |
agataactcttaacatggtttaatattgtgatagtgatgctacaataactattacgtacaaccgcgatcattatttaaaaccttggcatttaatattttt |
113 |
Q |
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| T |
46913964 |
agataactcttaacatggtttagtattgtgatagtgatgccacaataactattacttacaatcgcgatcattatttaaaaccttggcatttaatattttt |
46913865 |
T |
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| Q |
114 |
acaccaacctcctggagaaaccactgtggcgatgtggcgttggttattgagcttgggaggcgatggcggagatgaagaggaggagaatgataaagaggag |
213 |
Q |
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| T |
46913864 |
acaccaacctcctggagaaactactgtggcgatgtggcgttggttattgagcttcggaggtgatggcggagatgaagaggaggagaatgataaagaggag |
46913765 |
T |
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| Q |
214 |
gaggaagataaaatatcaacaagaaggtgagtgaaagcttgaacaatatacttgtgagtatgtgtaggattaagagcaagatagcataagagaagttcat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46913764 |
gaggaagataaaatatcaacaagaaggtgagtgaaagcttgaacaatatacttgtgagtatgtgtaggattaagagcaagatagcataagagaagttcat |
46913665 |
T |
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| Q |
314 |
gaagataatccc |
325 |
Q |
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|||||||||||| |
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| T |
46913664 |
gaagataatccc |
46913653 |
T |
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