View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17971_low_29 (Length: 312)

Name: NF17971_low_29
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17971_low_29
NF17971_low_29
[»] chr1 (8 HSPs)
chr1 (1-294)||(24340595-24340882)
chr1 (1-294)||(24352960-24353247)
chr1 (53-255)||(24310427-24310635)
chr1 (51-168)||(24416082-24416199)
chr1 (50-294)||(24322953-24323192)
chr1 (46-169)||(24367471-24367591)
chr1 (49-112)||(24369801-24369864)
chr1 (200-294)||(24367346-24367440)
[»] chr5 (4 HSPs)
chr5 (38-173)||(42561960-42562092)
chr5 (53-118)||(9120117-9120182)
chr5 (68-118)||(179412-179462)
chr5 (127-167)||(29712160-29712200)
[»] chr4 (25 HSPs)
chr4 (50-163)||(48852993-48853103)
chr4 (50-118)||(7878737-7878805)
chr4 (50-111)||(7790441-7790502)
chr4 (50-111)||(7908663-7908724)
chr4 (54-167)||(48863573-48863683)
chr4 (54-167)||(49040795-49040905)
chr4 (51-174)||(49038518-49038638)
chr4 (50-106)||(7771761-7771817)
chr4 (50-118)||(7773464-7773532)
chr4 (50-118)||(45371713-45371781)
chr4 (53-105)||(50666682-50666734)
chr4 (54-112)||(48156072-48156130)
chr4 (50-112)||(48864395-48864457)
chr4 (50-111)||(7813838-7813899)
chr4 (56-112)||(48147358-48147414)
chr4 (53-112)||(49043810-49043869)
chr4 (50-111)||(7786825-7786886)
chr4 (50-111)||(7800998-7801059)
chr4 (54-106)||(7237386-7237438)
chr4 (50-112)||(45384531-45384593)
chr4 (62-116)||(47208233-47208287)
chr4 (61-111)||(48903316-48903366)
chr4 (50-111)||(7766003-7766064)
chr4 (53-102)||(37826632-37826681)
chr4 (63-111)||(48861649-48861697)
[»] chr3 (3 HSPs)
chr3 (54-175)||(11015134-11015252)
chr3 (54-175)||(11005571-11005689)
chr3 (54-111)||(11024146-11024203)
[»] chr6 (3 HSPs)
chr6 (56-112)||(21016181-21016237)
chr6 (65-105)||(14197337-14197377)
chr6 (203-255)||(21979420-21979472)
[»] chr8 (2 HSPs)
chr8 (49-111)||(15349244-15349306)
chr8 (63-112)||(4031578-4031627)
[»] chr7 (1 HSPs)
chr7 (50-112)||(48884184-48884246)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 24340882 - 24340595
Alignment:
Q  1 ttgttgtacaacatacaagggacacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttgtattctttcattac 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24340882 ttgttgtacaacatacaagggaaacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttatattctttcattac 24340783  T
Q  101 ccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctaaatacccataaaccacaatccgtataacgatggtcaacatcaaga 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||      |||| |    
T  24340782 ccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatgg------tcaaaa 24340689  T
Q  201 tcatctgggagaggaatctctacaagtttcctttcgactaaatcaaaggcaacaacaagatagtcacgtgtatcataactgaaagccaaccagt 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  24340688 tcatctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaacaagatattcatgtgtatcataattgaaagccaaccagt 24340595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 24353247 - 24352960
Alignment:
Q  1 ttgttgtacaacatacaagggacacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttgtattctttcattac 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24353247 ttgttgtacaacatacaagggaaacattatgaatggtatcataagtagtaagaacaagagttttagtccaagatgactgcactttatattctttcattac 24353148  T
Q  101 ccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctaaatacccataaaccacaatccgtataacgatggtcaacatcaaga 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||      |||| |    
T  24353147 ccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatgg------tcaaaa 24353054  T
Q  201 tcatctgggagaggaatctctacaagtttcctttcgactaaatcaaaggcaacaacaagatagtcacgtgtatcataactgaaagccaaccagt 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  24353053 tcatctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaacaagatattcatgtgtatcataattgaaagccaaccagt 24352960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 24310635 - 24310427
Alignment:
Q  53 aacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcct 152  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||| |||  ||||||||||||||| |||||||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 24310536  T
Q  153 ctaaatacccataaaccacaatccgtataacgatggtcaa------catcaagatcatctgggagaggaatctctacaagtttcctttcgactaaatcaa 246  Q
    |||||||||||||||| |||||| ||  ||| ||  ||||      ||||| ||||||||||||||||||| |||| |||| ||||||| | ||||| ||    
T  24310535 ctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatgatcatctgggagaggaatttctagaagtatcctttcaattaaatgaa 24310436  T
Q  247 aggcaacaa 255  Q
    ||| |||||    
T  24310435 aggaaacaa 24310427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 24416199 - 24416082
Alignment:
Q  51 agaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatc 150  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||  |||||| |  |  || |||||||||||| |||||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 24416100  T
Q  151 ctctaaatacccataaac 168  Q
    ||||||||||||||||||    
T  24416099 ctctaaatacccataaac 24416082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 50 - 294
Target Start/End: Complemental strand, 24323192 - 24322953
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcat----tacccatatatcaaccgtatcctcatccaccataacccatagacttag 145  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||     ||||||||||||||  || ||   ||| ||| ||||||||||||  |    
T  24323192 aagaacaagagttttagtcgaagatgactgcactttgtattctttcatcacccacccatatatcaactttacccaagtcctccaaaacccatagactggg 24323093  T
Q  146 aaatcctctaaatacccataaaccacaatccgtataacgatggtcaacatcaagatcatctgggagaggaatctctacaagtttcctttcgactaaatca 245  Q
    ||||||||||||||||||||||||| ||||    |  |||     |||||||| ||||||| ||| |||||||||||||| ||| ||||| | || ||||    
T  24323092 aaatcctctaaatacccataaaccataatc----tttcga-----aacatcaatatcatctaggaaaggaatctctacaaattttctttccattagatca 24323002  T
Q  246 aaggcaacaacaagatagtcacgtgtatcataactgaaagccaaccagt 294  Q
    |||||||||  |||||| ||| ||| ||||  ||| |||||||||||||    
T  24323001 aaggcaacagtaagatactcatgtgcatcaggacttaaagccaaccagt 24322953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 24367591 - 24367471
Alignment:
Q  46 tagtaagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttag 145  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| ||  |||| ||| |||  || |||||||||||| ||    
T  24367591 tagttagaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatatataaagtgtat-ctc-tcc-tcaaaacccatagactgag 24367495  T
Q  146 aaatcctctaaatacccataaacc 169  Q
    ||||||||||||||||||||||||    
T  24367494 aaatcctctaaatacccataaacc 24367471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 24369864 - 24369801
Alignment:
Q  49 taagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||||||||||||||||||||||||| ||||||   || | || ||| ||||||||||||||    
T  24369864 taagaacaagagttttagtccaagatgaatgcactccatactattccatcacccatatatcaac 24369801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 24367440 - 24367346
Alignment:
Q  200 atcatctgggagaggaatctctacaagtttcctttcgactaaatcaaaggcaacaacaagatagtcacgtgtatcataactgaaagccaaccagt 294  Q
    |||| ||||||||||||| || | |||||||||||| | ||||  ||||||||||| || || | ||||| |||||||||  |||| ||||||||    
T  24367440 atcaactgggagaggaatatcgagaagtttcctttccattaaaagaaaggcaacaataacattgacacgtatatcataacgaaaagtcaaccagt 24367346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 42561960 - 42562092
Alignment:
Q  38 atcataagtagtaagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccat 137  Q
    ||||||| ||| |||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||||||||   ||  || |||  || || ||||    
T  42561960 atcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac---attatcgtccctcaaaatccat 42562056  T
Q  138 agacttagaaatcctctaaatacccataaaccacaa 173  Q
    ||||| |||||||||||||||||||| |||||||||    
T  42562057 agactgagaaatcctctaaatacccaaaaaccacaa 42562092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 9120182 - 9120117
Alignment:
Q  53 aacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatc 118  Q
    ||||||||||||  ||||||| || |||||||||||||||||||| |||||||| ||||| |||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatc 9120117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 179462 - 179412
Alignment:
Q  68 ccaagatgactgcactttgtattctttcattacccatatatcaaccgtatc 118  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||| |||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 179412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 29712160 - 29712200
Alignment:
Q  127 ccataacccatagacttagaaatcctctaaatacccataaa 167  Q
    ||||| |||||||||| ||| ||||||||||||||||||||    
T  29712160 ccatatcccatagactgagacatcctctaaatacccataaa 29712200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 48853103 - 48852993
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaat 149  Q
    |||||||||||| ||||||||||| ||  ||||||||||||||||||| |||||||| ||||| |||   |||||| |||| ||||||| ||||||||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgta---tcatcccccatgacccatatacttagaaat 48853007  T
Q  150 cctctaaataccca 163  Q
     |||||||||||||    
T  48853006 tctctaaataccca 48852993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 7878805 - 7878737
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatc 118  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||||| |||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 7878737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7790502 - 7790441
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  7790502 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7908724 - 7908663
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||||    
T  7908724 aagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 167
Target Start/End: Complemental strand, 48863683 - 48863573
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 153  Q
    |||||||||||| |||||||||| ||||||  |||||||| ||| |||||||| |||||| ||   | |||| ||  |||||||||||| ||| ||||||    
T  48863683 acaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaacctta---tgatcccccgaaacccatagactgagagatcctc 48863587  T
Q  154 taaatacccataaa 167  Q
    ||||||||||||||    
T  48863586 taaatacccataaa 48863573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 49040795 - 49040905
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 153  Q
    |||||| ||||| |||||||||| ||||||   ||||||| ||| ||||||||||||||||||   | |||| ||  |||||||||||| |||||||||     
T  49040795 acaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgta---tgatcccccgaaacccatagactgagaaatcctt 49040891  T
Q  154 taaatacccataaa 167  Q
    ||||||||||||||    
T  49040892 taaatacccataaa 49040905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 49038518 - 49038638
Alignment:
Q  51 agaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatc 150  Q
    ||||||||||| ||||||||||| || || ||||||||||||||||| |||||||| ||||| |||    ||  | ||||| |||||| ||| ||||||     
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaacggta---gcacgctccatagcccatacactgagaaatt 49038614  T
Q  151 ctctaaatacccataaaccacaat 174  Q
    ||| |||||||||||||| |||||    
T  49038615 ctcgaaatacccataaacaacaat 49038638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 7771817 - 7771761
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatat 106  Q
    ||||||||||||||||||||| || || |||||||||||||||||||| ||||||||    
T  7771817 aagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatat 7771761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 7773464 - 7773532
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatc 118  Q
    ||||||||||| |||| ||||||| || |||||||||||||||||||| |||||||| ||||| |||||    
T  7773464 aagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 7773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 45371713 - 45371781
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatc 118  Q
    |||||||| ||| ||||||||||| || |||||||||||||||||||| |||||||| ||||| |||||    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 50666734 - 50666682
Alignment:
Q  53 aacaagagttttagtccaagatgactgcactttgtattctttcattacccata 105  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| |||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 48156072 - 48156130
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||||||||||||||||| || |||||||||||||| ||||| |||||||| |||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaac 48156130  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 48864457 - 48864395
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||||||| | ||||||||||| || |||||||||||||||||||| |||||||| |||||    
T  48864457 aagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

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Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7813899 - 7813838
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||  |||||||| ||||    
T  7813899 aagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 48147358 - 48147414
Alignment:
Q  56 aagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48147414  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 49043810 - 49043869
Alignment:
Q  53 aacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    ||||||||| |||||||| || || |||||||||||||||||||| |||||||| |||||    
T  49043810 aacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaac 49043869  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7786886 - 7786825
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||| ||| |||||||| | ||||| |||||||||||||| |||||||| ||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7801059 - 7800998
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||||||| ||||||| || ||||||||||| |||||||  |||||||| ||||    
T  7801059 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 7237386 - 7237438
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatat 106  Q
    |||||||||||||||||| | || |||| ||||||||||||||| ||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatat 7237438  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 45384531 - 45384593
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    ||||||| |||| || |||||||| || |||||||| ||||||||||| |||||||| |||||    
T  45384531 aagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaac 45384593  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 47208287 - 47208233
Alignment:
Q  62 tttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgta 116  Q
    ||||||||||||||| || ||||||||||||||||| |||| ||| |||| ||||    
T  47208287 tttagtccaagatgattgtactttgtattctttcatcacccttatttcaagcgta 47208233  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 48903366 - 48903316
Alignment:
Q  61 ttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||||  | |||||||||||||||||||| |||||||| ||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7766064 - 7766003
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    ||||||||| || |||||||| || || | |||||||||||||||||| |||||||| ||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  53 aacaagagttttagtccaagatgactgcactttgtattctttcattaccc 102  Q
    ||||||||| ||||||||||| || |||| ||||||||||||||| ||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 48861697 - 48861649
Alignment:
Q  63 ttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||||||  | ||||||||||||||||| ||||||||||| ||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaa 48861649  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 11015134 - 11015252
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 153  Q
    ||||||||||||  |||||| || |||||||||||||||||||| |||||||| ||||| || ||  ||||| ||||| ||||||||||||||||| |||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgt-tc--catcctccatagcccatagacttagaaattctc 11015230  T
Q  154 taaatacccataaaccacaatc 175  Q
     ||||| ||| ||| |||||||    
T  11015231 caaatatccacaaatcacaatc 11015252  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 11005571 - 11005689
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 153  Q
    |||||||  ||||||||||| || |||||||||||||||||||| |||||||| ||||  ||    |||||| ||||| |||||||||| |||||| |||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt---ttcatcccccatagcccatagactaagaaattctc 11005667  T
Q  154 taaatacccataaaccacaatc 175  Q
     ||||| ||| ||| |||||||    
T  11005668 caaatatccacaaatcacaatc 11005689  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  54 acaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    |||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 21016237 - 21016181
Alignment:
Q  56 aagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||| ||||||||||| || || ||||||||||||||||| |||||||| |||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaac 21016181  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  65 agtccaagatgactgcactttgtattctttcattacccata 105  Q
    |||||||||||| |||| ||||||||||||||| |||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 21979420 - 21979472
Alignment:
Q  203 atctgggagaggaatctctacaagtttcctttcgactaaatcaaaggcaacaa 255  Q
    |||||| ||||| ||||| | |||||||||||| | |||||||||||||||||    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaa 21979472  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 15349306 - 15349244
Alignment:
Q  49 taagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaa 111  Q
    ||||||||||| | || |||||||| || | |||||||||||||||||| |||||||| ||||    
T  15349306 taagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 4031578 - 4031627
Alignment:
Q  63 ttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    ||||||||||| || |||| ||||||||||||||| |||||||| |||||    
T  4031578 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 4031627  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 48884246 - 48884184
Alignment:
Q  50 aagaacaagagttttagtccaagatgactgcactttgtattctttcattacccatatatcaac 112  Q
    |||||||||||| |||||||||||    |||||||||||||||||||| ||| |||| |||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaac 48884184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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