View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_32 (Length: 291)
Name: NF17971_low_32
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 50041761 - 50042024
Alignment:
| Q |
12 |
agcagagaccgaaaaccaactcacttctctcatctacggtgcgtaatcaacaactcttaatcgcttctatttgttaaacctaatctctaattcgaatcat |
111 |
Q |
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| T |
50041761 |
agcagaaaccgaaaaccaactcacttctctcatctacggtgcgtaatcaacaactcttaatcgcttctatttgttaaacctaatctctaattcgaatcat |
50041860 |
T |
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| Q |
112 |
actcgatgcgatcttccattcgaaccaaacgatacacgatttgattcattattcaatttcatctttctttgcttaa-tcgtgcagagatgtcaaacgaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50041861 |
actcgatgcgatcttccattcgaaccaaacgatacacgatttgattcattattcaatttcatctttctttgcttaattcgtgcagagatgtcaaacgaag |
50041960 |
T |
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| Q |
211 |
ctcaatctataatggagaacatgcttaagatgatcgcgttagttacttaatcataattatttct |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50041961 |
ctcaatctataatggagaacatgcttaagatgatcgcgttagttacttaatcataattatttct |
50042024 |
T |
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