View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_34 (Length: 279)
Name: NF17971_low_34
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 45862233 - 45862504
Alignment:
| Q |
8 |
tgaaaagaaaatactagtacttgcctgcttctgcatagctcaacaaccacattatctggcttcacagcttttactacacgctcaacctccatagctgact |
107 |
Q |
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| T |
45862233 |
tgaaaagaaaatactagtacttgcctgcttctgcatagctcaacaaccacattatctggcttcacagcttttactacacgctcaacatccatagctgact |
45862332 |
T |
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| Q |
108 |
ctttagaaacatgtgtagttccaatcaaccaaatatattcaggttcaacaaattcagtcctccaagaaggaacaggaccaaacctcttcttctgaaccaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45862333 |
ctttagaaacatgtgtagttccaatcaaccaaatatattcaggttcaacaaattcagtcctccaagaaggaacaggaccaaacctcttcttctgaaccaa |
45862432 |
T |
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| Q |
208 |
aaccaagctaccattgtcagccaaatcaagcaactcagggtaacattcttctataacagctctagattcatc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45862433 |
aaccaagctaccattgtcagccaaatcaagcaactcagggtaacattcttctataacagctctagattcatc |
45862504 |
T |
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