View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_35 (Length: 269)
Name: NF17971_low_35
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 40966628 - 40966388
Alignment:
| Q |
18 |
caaagtgtgacatgttagttccgtaacgattttaataggtcacctaacttcaactgacctagaatactctcctccctgaaccatgtgaaaggtggaatgg |
117 |
Q |
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| T |
40966628 |
caaagtgtgacatgttagttccgtaacgattttaataggtcacctaacttcaactgacctagaatactctcctccctgaaccatgtgaaaggtggaatgg |
40966529 |
T |
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| Q |
118 |
caatgtcaccaacacagtcatccttactagaatcggaagacagtgatgctacccacttatcggtacctatgagccataatttcattcaagaagttacagn |
217 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40966528 |
caatgtcaccaacaaagtcatcctcactagaatcggaagacagggatgctacccacttatcggtacctatgagccataatttcattcaagaagttacagt |
40966429 |
T |
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| Q |
218 |
nnnnnnataaatttattatctcttcaattatatcaagaatt |
258 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40966428 |
ttttttataaatttattatctcttcaattatatcaagaatt |
40966388 |
T |
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