View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_37 (Length: 261)
Name: NF17971_low_37
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 33 - 227
Target Start/End: Complemental strand, 42163850 - 42163656
Alignment:
| Q |
33 |
gtttcgtaaatttttgtacaggcacatgcccacacatccaacaacatacatttgtccatgacaagagttatctttgattcatttatttgataaagtgaag |
132 |
Q |
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| T |
42163850 |
gtttcgtaaatttttgtgtaggcacatgcccacacatccaacaacatacatttatccatgacaagagttatctttgattcatttatttgataaagtgaag |
42163751 |
T |
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| Q |
133 |
ctcctcttgcaggttgaaaactaagaatgataatttaacttttgagtttcatgtatggtgtattaaccttcttcggtctttgagttatattactt |
227 |
Q |
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| T |
42163750 |
cttctcttgcaggttgaaaactaagaatgataatttaacttttgagtttcatgtatggtgtattaaccttcttcggtctttgagttatattactt |
42163656 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 4930884 - 4930938
Alignment:
| Q |
40 |
aaatttttgtacaggcacatgcccacacatccaacaacatacatttgtccatgac |
94 |
Q |
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| T |
4930884 |
aaatttttgtggaggcacatgcccacacatccaacaacatacattcgtccctgac |
4930938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 14200261 - 14200230
Alignment:
| Q |
52 |
aggcacatgcccacacatccaacaacatacat |
83 |
Q |
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| T |
14200261 |
aggcacatgcccacacatccaacaacatacat |
14200230 |
T |
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