View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_4 (Length: 578)
Name: NF17971_low_4
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 92 - 569
Target Start/End: Original strand, 56312756 - 56313227
Alignment:
| Q |
92 |
tgaatatattgaaaccgtgtatttgttggttttnnnnnnnntcaaccctagttttaaagagctatattatatattatgcatcttgattttgagtcgtctt |
191 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
56312756 |
tgaatatattgaaaccgtgtctttgttggttttaaaaaaa-tcaaccctagttttaaagagctatattatatattatgcatcttgattttgggtcgtctt |
56312854 |
T |
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| Q |
192 |
ttttcagaatccataaatatatagtatacacacgcttgatttccaactaatcatagatccaaagctatagcacaccaaaaca--atagtagctagctgcg |
289 |
Q |
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| T |
56312855 |
tt-tcagaatccataaatatatagtatacacacgcttgatttccatctaatcatagatccaaagctatagcacaccaaaacaatatagtagctagctgcg |
56312953 |
T |
|
| Q |
290 |
tgaaacttgcagccnnnnnnnnnnnnnnnntcaaattagttagaagccaagaatgcaagagggagagagtgagcaattaattattacgtgatagaaatta |
389 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56312954 |
tgaaacttgcagcc----atatatatatattcaaattagttagaagccaagaatgcaagagggagagagtgagcaattaattattacgtgatagaaatta |
56313049 |
T |
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| Q |
390 |
aagaaagaaagagagtacaaattaaacagtgcctaaaatatattcatacaacaactatcaccgtttgtgattaatnnnnnnnnnnnnnnnnnncttttct |
489 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
56313050 |
aagaaagaaagagagtacaaattaaacagtacctaaaatatattcatacaacaactatcaccgtttgtgattaat--tctctctctctctctccttctct |
56313147 |
T |
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| Q |
490 |
cgcatacatacatacacatgtactatttcatgcatgaatttttaaattctgaccacaaattaattaattcctttcatctc |
569 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
56313148 |
cgcatacatacatacacatgtactatttcatgcatgaattttaaaattctgaccacaaattaattaattcctttcatctc |
56313227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 56312634 - 56312712
Alignment:
| Q |
1 |
caacatgaaaccgaacgatatcaaaaggtatataataattacttctccttaattaccaaatactactgctctaattcat |
79 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
56312634 |
caacatgaaaccgaacgatatcaaaaggtatataataattacttctccttaattaccaaatattactgctctaattcat |
56312712 |
T |
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