View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_41 (Length: 253)
Name: NF17971_low_41
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 1237748 - 1237522
Alignment:
| Q |
18 |
tgaatgatttcattcttcaggacaggtcatccattacatccacaaactacagagtgcattcagttgaaacttttagaaaaggtttttatttttagttaac |
117 |
Q |
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| T |
1237748 |
tgaatgatttcattcttcaggacaggtcattcattacatccacaaactacagagtgcattctgttgaaacttttagaaaaggtttttatttttagttaac |
1237649 |
T |
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| Q |
118 |
ttctatgtttgcttcgatctctgtggaattttgccaatgnnnnnnnnccattgcactagtaccattataaaaactgtactgcgccttctttattgcattg |
217 |
Q |
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| T |
1237648 |
ttctatgtttgcttcgatctctgtggaattttgccaatgaaaaaagaccattgcactagtaccattataaaaactgtactgcgccttctttattgcattg |
1237549 |
T |
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| Q |
218 |
tggatgtatatggtttctaagaattat |
244 |
Q |
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| T |
1237548 |
tggatgtatatggtttctaagaattat |
1237522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 1175757 - 1175820
Alignment:
| Q |
90 |
ttagaaaaggtttttatttttagttaacttctatgtttgcttcgatctctgtggaattttgccaat |
155 |
Q |
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| T |
1175757 |
ttagaaaaggttttcatttttagttaacttctatgtttgcttcgatctctgt--aattttgccaat |
1175820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 1182232 - 1182281
Alignment:
| Q |
193 |
gtactgcgccttctttattgcattgtggatgtatatggtttctaagaatt |
242 |
Q |
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| T |
1182232 |
gtactgtgccttctttattgtattgtggatgtatatggtttctaagaatt |
1182281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 1176681 - 1176728
Alignment:
| Q |
195 |
actgcgccttctttattgcattgtggatgtatatggtttctaagaatt |
242 |
Q |
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| T |
1176681 |
actgtgccttctttattgcattgtggttgtatatggtttctaagaatt |
1176728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 897004 - 897058
Alignment:
| Q |
186 |
aaaaactgtactgcgccttctttattgcattgtggatgtatatggtttctaagaa |
240 |
Q |
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| T |
897004 |
aaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaa |
897058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 38211419 - 38211367
Alignment:
| Q |
176 |
gtaccattataaaaactgtactgcgccttctttattgcattgtggatgtatatg |
229 |
Q |
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| T |
38211419 |
gtaccattataaaaactgaactgctccttctttatagcatt-ttgatgtatatg |
38211367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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