View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17971_low_46 (Length: 233)
Name: NF17971_low_46
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_46 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47743689 - 47743469
Alignment:
| Q |
1 |
tttattcaaaacactccatatgtactgtatgcactatagagtatagagtgcatacatggaagtgaatacttttttaaacggtctattgtaaaatttcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47743689 |
tttattcaaaacactccatatgtactgtatgcactatagagtatagagtgcatacatggaagtgaatacttttttaaacggtctattgtaaaatttcaaa |
47743590 |
T |
|
| Q |
101 |
aaagaaattatattgaaatacannnnnnnncatatccttggagtgtatatactatacctcaaagaaaaagttgtgaattcagatactaaaaaataaatat |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47743589 |
aaagaaattatattgaaatacattttttttcatatccttggagtgtatatactatacctcaaagaaaaagttgtgaattcagatactaaaaaataaatat |
47743490 |
T |
|
| Q |
201 |
gattttttcaaaggaaaatat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47743489 |
gattttttcaaaggaaaatat |
47743469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University