View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17971_low_48 (Length: 229)
Name: NF17971_low_48
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17971_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 17502712 - 17502501
Alignment:
| Q |
1 |
tactttaatcatacggtttaagtaaagaaatcaaagtccgtattcatatgaatgttgctgaaaacaaattattaaggagttgttgacttgaaagtttgat |
100 |
Q |
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| T |
17502712 |
tactttaatcatacggtttaagtaaagaaatcaaagtccctattcatatgaatgttgctgaaaacaaattattaaggagttgttgacttgaaagtttgat |
17502613 |
T |
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| Q |
101 |
gtaatattccttcaaggggacgttttccttaaatgaattgaaattctaaagcattaattaatcttggaactgaaccattcatttttacat-agcaaaaga |
199 |
Q |
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| T |
17502612 |
gtaatattccttcaaggggacgttttccttaaatgaattgaaattctaaaccattaattaataatggaactgaaccattcatttttacataagcaaaaga |
17502513 |
T |
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| Q |
200 |
agttcttattat |
211 |
Q |
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| T |
17502512 |
agttcttattat |
17502501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 17474200 - 17474136
Alignment:
| Q |
142 |
aattctaaagcattaattaatcttggaactgaaccattcatttttacatagcaaaagaagttctt |
206 |
Q |
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| T |
17474200 |
aattctataccattaattaatcatggaactaaaccattcattcttacatagcaaaagaagttctt |
17474136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 17474554 - 17474523
Alignment:
| Q |
88 |
ttgaaagtttgatgtaatattccttcaagggg |
119 |
Q |
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| T |
17474554 |
ttgaaagtttgatgtaatattccttcaagggg |
17474523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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