View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17971_low_5 (Length: 559)

Name: NF17971_low_5
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17971_low_5
NF17971_low_5
[»] chr7 (33 HSPs)
chr7 (81-509)||(21811322-21811739)
chr7 (1-86)||(21812533-21812618)
chr7 (74-151)||(21814428-21814505)
chr7 (74-153)||(15614282-15614362)
chr7 (74-152)||(2628275-2628354)
chr7 (296-416)||(12814595-12814717)
chr7 (296-416)||(3951538-3951658)
chr7 (87-153)||(46963110-46963176)
chr7 (298-416)||(38192963-38193084)
chr7 (74-152)||(46964450-46964529)
chr7 (342-416)||(13797417-13797494)
chr7 (362-416)||(16902338-16902392)
chr7 (506-540)||(21811274-21811308)
chr7 (380-418)||(44414097-44414135)
chr7 (380-418)||(48104508-48104546)
chr7 (362-414)||(39065386-39065439)
chr7 (296-416)||(4103738-4103859)
chr7 (93-152)||(6841488-6841547)
chr7 (362-416)||(9915652-9915707)
chr7 (362-416)||(9923564-9923619)
chr7 (373-416)||(3951384-3951429)
chr7 (339-416)||(6269529-6269607)
chr7 (381-415)||(39118883-39118917)
chr7 (352-416)||(39580156-39580222)
chr7 (83-153)||(48643620-48643690)
chr7 (74-130)||(6840638-6840695)
chr7 (372-417)||(16902106-16902150)
chr7 (380-416)||(21298264-21298301)
chr7 (21-50)||(21814517-21814546)
chr7 (362-399)||(24478043-24478080)
chr7 (356-416)||(24555896-24555957)
chr7 (346-399)||(27241545-27241598)
chr7 (372-404)||(31307865-31307897)
[»] chr3 (32 HSPs)
chr3 (74-152)||(18088166-18088244)
chr3 (74-151)||(16462968-16463045)
chr3 (65-153)||(814412-814499)
chr3 (83-152)||(814260-814329)
chr3 (74-153)||(46691481-46691560)
chr3 (341-416)||(18465077-18465155)
chr3 (94-153)||(50297459-50297518)
chr3 (362-416)||(15309085-15309139)
chr3 (296-330)||(44172917-44172951)
chr3 (296-330)||(44179617-44179651)
chr3 (341-399)||(29013426-29013486)
chr3 (74-153)||(42531288-42531368)
chr3 (74-153)||(50294657-50294735)
chr3 (339-416)||(3072422-3072498)
chr3 (372-416)||(4699976-4700022)
chr3 (372-414)||(8827436-8827479)
chr3 (339-416)||(47117340-47117415)
chr3 (362-416)||(49872950-49873005)
chr3 (356-415)||(53806597-53806656)
chr3 (21-50)||(16463057-16463086)
chr3 (372-405)||(19598747-19598780)
chr3 (380-416)||(19624029-19624066)
chr3 (371-415)||(22949248-22949293)
chr3 (352-416)||(25109834-25109898)
chr3 (356-416)||(26927736-26927797)
chr3 (339-412)||(40462525-40462597)
chr3 (356-415)||(47117548-47117609)
chr3 (379-415)||(5416064-5416100)
chr3 (356-399)||(35460664-35460708)
chr3 (380-416)||(43767911-43767947)
chr3 (373-416)||(49880749-49880793)
chr3 (379-416)||(51252302-51252341)
[»] scaffold0727 (2 HSPs)
scaffold0727 (296-418)||(835-956)
scaffold0727 (379-416)||(1160-1198)
[»] chr2 (43 HSPs)
chr2 (296-418)||(25926887-25927008)
chr2 (88-153)||(8986926-8986991)
chr2 (74-153)||(32291154-32291234)
chr2 (74-152)||(1172797-1172875)
chr2 (339-405)||(10374319-10374385)
chr2 (339-396)||(27010165-27010222)
chr2 (83-152)||(32276940-32277008)
chr2 (88-152)||(29409118-29409182)
chr2 (339-399)||(38358470-38358529)
chr2 (74-152)||(8985574-8985653)
chr2 (342-416)||(22116156-22116233)
chr2 (339-416)||(25077429-25077506)
chr2 (380-417)||(9012004-9012041)
chr2 (96-153)||(38583546-38583603)
chr2 (356-416)||(39094200-39094261)
chr2 (352-416)||(85440-85507)
chr2 (380-416)||(85689-85725)
chr2 (347-416)||(2809829-2809903)
chr2 (296-416)||(20182265-20182384)
chr2 (380-416)||(37200348-37200384)
chr2 (371-418)||(38385934-38385982)
chr2 (362-417)||(41089155-41089211)
chr2 (339-416)||(45464465-45464542)
chr2 (372-418)||(10851702-10851749)
chr2 (351-397)||(21302252-21302299)
chr2 (362-416)||(34428866-34428921)
chr2 (368-416)||(9011758-9011808)
chr2 (380-417)||(18701551-18701589)
chr2 (379-416)||(25927139-25927177)
chr2 (380-418)||(41089403-41089441)
chr2 (372-416)||(17328093-17328138)
chr2 (372-416)||(19641447-19641492)
chr2 (372-416)||(19840040-19840085)
chr2 (380-416)||(23260321-23260358)
chr2 (380-416)||(30371386-30371423)
chr2 (356-415)||(32449689-32449750)
chr2 (372-416)||(34635707-34635752)
chr2 (362-416)||(34635943-34635999)
chr2 (372-416)||(37147552-37147597)
chr2 (342-400)||(38358285-38358345)
chr2 (356-416)||(43302108-43302169)
chr2 (339-414)||(27009971-27010047)
chr2 (356-415)||(43301882-43301942)
[»] chr6 (25 HSPs)
chr6 (74-153)||(10741771-10741850)
chr6 (74-152)||(21862689-21862768)
chr6 (341-416)||(17441403-17441479)
chr6 (341-418)||(30381565-30381644)
chr6 (352-417)||(1319337-1319403)
chr6 (296-413)||(34715691-34715807)
chr6 (352-416)||(5953163-5953229)
chr6 (74-152)||(10740574-10740650)
chr6 (363-416)||(18247170-18247225)
chr6 (74-151)||(33424009-33424087)
chr6 (74-153)||(18984496-18984576)
chr6 (339-418)||(34715883-34715962)
chr6 (105-152)||(21858039-21858086)
chr6 (358-416)||(29942440-29942499)
chr6 (380-418)||(4840685-4840723)
chr6 (74-123)||(22868490-22868540)
chr6 (379-416)||(24062412-24062450)
chr6 (296-330)||(30245927-30245961)
chr6 (370-416)||(30246072-30246118)
chr6 (380-416)||(7922318-7922355)
chr6 (380-416)||(31851759-31851796)
chr6 (339-416)||(7922509-7922591)
chr6 (74-117)||(9290686-9290730)
chr6 (362-418)||(10343801-10343857)
chr6 (379-414)||(20979763-20979799)
[»] chr4 (27 HSPs)
chr4 (74-152)||(54148275-54148353)
chr4 (74-153)||(16871650-16871730)
chr4 (74-152)||(54146612-54146692)
chr4 (373-416)||(1386035-1386078)
chr4 (354-415)||(54130364-54130425)
chr4 (312-416)||(16482234-16482339)
chr4 (369-416)||(37273403-37273451)
chr4 (352-418)||(40696197-40696263)
chr4 (339-416)||(7272267-7272347)
chr4 (372-416)||(51965373-51965418)
chr4 (373-416)||(21798577-21798621)
chr4 (74-152)||(16543360-16543439)
chr4 (94-145)||(16869513-16869564)
chr4 (362-416)||(35539781-35539836)
chr4 (367-416)||(11563523-11563573)
chr4 (83-152)||(14458539-14458609)
chr4 (362-415)||(27579516-27579570)
chr4 (371-416)||(46094250-46094296)
chr4 (347-416)||(54130518-54130588)
chr4 (362-416)||(5401998-5402054)
chr4 (379-416)||(15156916-15156952)
chr4 (372-416)||(16493519-16493564)
chr4 (362-416)||(18320696-18320752)
chr4 (372-416)||(20125429-20125474)
chr4 (380-416)||(17800756-17800792)
chr4 (356-416)||(19875964-19876027)
chr4 (379-416)||(21780373-21780412)
[»] chr1 (30 HSPs)
chr1 (65-153)||(2076924-2077012)
chr1 (70-152)||(2071557-2071641)
chr1 (65-152)||(2073392-2073479)
chr1 (74-152)||(15630178-15630257)
chr1 (74-152)||(28664975-28665058)
chr1 (83-152)||(2075101-2075171)
chr1 (87-152)||(6696015-6696080)
chr1 (74-153)||(15629379-15629459)
chr1 (339-416)||(24987609-24987687)
chr1 (339-418)||(41055098-41055179)
chr1 (342-416)||(13545580-13545656)
chr1 (365-416)||(35034299-35034351)
chr1 (339-416)||(25235775-25235854)
chr1 (362-416)||(42736822-42736877)
chr1 (296-398)||(13545742-13545843)
chr1 (367-416)||(22604668-22604718)
chr1 (356-399)||(13738468-13738512)
chr1 (339-399)||(17746457-17746516)
chr1 (362-416)||(28797160-28797217)
chr1 (369-416)||(50596001-50596048)
chr1 (367-416)||(16698870-16698920)
chr1 (378-416)||(30659559-30659597)
chr1 (377-416)||(34360260-34360301)
chr1 (346-399)||(8620177-8620230)
chr1 (372-416)||(18458813-18458858)
chr1 (367-415)||(21854005-21854054)
chr1 (380-416)||(28410915-28410952)
chr1 (362-399)||(40091705-40091742)
chr1 (362-418)||(51904182-51904239)
chr1 (367-399)||(28797367-28797399)
[»] scaffold0092 (1 HSPs)
scaffold0092 (342-418)||(44390-44466)
[»] chr5 (21 HSPs)
chr5 (74-152)||(11320507-11320585)
chr5 (296-416)||(31861492-31861616)
chr5 (296-399)||(22642143-22642242)
chr5 (362-416)||(29104445-29104500)
chr5 (296-416)||(21149032-21149156)
chr5 (362-415)||(9226854-9226907)
chr5 (356-416)||(15885682-15885743)
chr5 (74-150)||(24137600-24137677)
chr5 (372-416)||(26035095-26035139)
chr5 (362-416)||(10976748-10976803)
chr5 (372-416)||(22642333-22642379)
chr5 (362-416)||(20577469-20577523)
chr5 (363-416)||(20698522-20698576)
chr5 (371-416)||(36992993-36993039)
chr5 (367-400)||(6897108-6897141)
chr5 (74-111)||(9512489-9512526)
chr5 (347-416)||(20076864-20076936)
chr5 (367-415)||(24329523-24329572)
chr5 (372-418)||(33658869-33658917)
chr5 (371-416)||(711468-711515)
chr5 (371-399)||(32637484-32637512)
[»] scaffold0809 (1 HSPs)
scaffold0809 (379-418)||(3768-3807)
[»] scaffold0740 (1 HSPs)
scaffold0740 (362-416)||(3648-3703)
[»] scaffold0142 (2 HSPs)
scaffold0142 (362-416)||(34827-34882)
scaffold0142 (362-416)||(34570-34626)
[»] scaffold0002 (1 HSPs)
scaffold0002 (93-152)||(406297-406356)
[»] chr8 (20 HSPs)
chr8 (342-416)||(6952884-6952958)
chr8 (380-418)||(38500533-38500571)
chr8 (379-416)||(40652672-40652709)
chr8 (356-416)||(43400672-43400733)
chr8 (379-416)||(43945403-43945440)
chr8 (380-416)||(4105299-4105335)
chr8 (341-403)||(24582011-24582072)
chr8 (352-417)||(2696454-2696521)
chr8 (356-415)||(34374231-34374290)
chr8 (380-414)||(26447602-26447636)
chr8 (362-419)||(42406221-42406279)
chr8 (372-416)||(960508-960553)
chr8 (362-416)||(24970964-24971020)
chr8 (362-416)||(24971178-24971234)
chr8 (372-416)||(25277717-25277762)
chr8 (380-416)||(27198145-27198182)
chr8 (356-416)||(27543621-27543681)
chr8 (372-416)||(29309566-29309611)
chr8 (347-415)||(35077717-35077784)
chr8 (74-153)||(43615457-43615537)
[»] scaffold0325 (1 HSPs)
scaffold0325 (110-152)||(14596-14638)
[»] scaffold0031 (1 HSPs)
scaffold0031 (367-416)||(1828-1878)
[»] scaffold1554 (1 HSPs)
scaffold1554 (359-415)||(331-388)
[»] scaffold0032 (1 HSPs)
scaffold0032 (356-416)||(91051-91112)
[»] scaffold0068 (1 HSPs)
scaffold0068 (341-397)||(38633-38689)
[»] scaffold0007 (1 HSPs)
scaffold0007 (94-153)||(14306-14365)
[»] scaffold0769 (2 HSPs)
scaffold0769 (362-416)||(3915-3971)
scaffold0769 (372-416)||(4162-4207)
[»] scaffold0384 (1 HSPs)
scaffold0384 (380-416)||(4250-4287)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 81 - 509
Target Start/End: Complemental strand, 21811739 - 21811322
Alignment:
Q  81 ataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacatgatgcatcggccaagtggtttttctag 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21811739 ataaacctaattgactctaacttactaatataaaggcctaatagcttaaacccaatacattattatctaacatgatgcatcagccaagtggtttttctag 21811640  T
Q  181 acacaaatatccttttcaagaaagatggtagatgttcaaggtgttatcaaatgaattttaaagaaactaccatgataaatgaagataattaacccaaata 280  Q
    ||||||||||||||||             |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  21811639 acacaaatatcctttt-------------agatattcaaggtgttatctaatgaattttaaagaaactaccacgataaatgaagataattaacctaaata 21811553  T
Q  281 taaacatcacaaaaatgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaaaattacagggaaaaaactgga 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||  |    
T  21811552 taaacatcacaaaaatgtttggcctattagagggggtaaatcaaaacaaaattttttaacaggggataaataaataaaaaattacagggaaaaaact-aa 21811454  T
Q  381 aatgacctatattaca--gggataaagacctattaa-ccttgtttgtatatttcaccataaaaggcttcatatctttaagttggatgtcatttgcataat 477  Q
    ||||||||||||||||  |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  21811453 aatgacctatattacagggggataaagatctattaacccttgtttgtatgtttcaccataaaaggcttcatatccttaaattggatgtcatttgcataat 21811354  T
Q  478 gaacggtctgttttatttgaagacaatcgtga 509  Q
    ||||   |||||||||||| ||||||||||||    
T  21811353 gaacaacctgttttatttggagacaatcgtga 21811322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 21812618 - 21812533
Alignment:
Q  1 aaagacgacgactagagtttaatacaaaaaatagattaacattacaaaaggttacgaacttacgagagaatatatatataataaac 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  21812618 aaagacgacgactagagtttaatacaaaaaatagattaacattacaaaaggttacgaacttatgagataatatatatataataaac 21812533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 21814505 - 21814428
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaac 151  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||||||||    
T  21814505 atatataataaacctaatggactctaacttactaatataaaggcttaatatcttaagctcaatactttattatctaac 21814428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 15614282 - 15614362
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||||||||||| |||||| ||||||||||| |||||||||||| | |||| |||||||||||||| ||||||||||||||    
T  15614282 atatataataaaacctaatggactctaacttgctaatataaaggtccaataacttaagcccaatactttattatctaacat 15614362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 2628275 - 2628354
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    |||||||||||| |||||| ||||||||||||||||||||||| |  |||| ||||||| |||||| |||||||||||||    
T  2628275 atatataataaaacctaatggactctaacttactaatataaagactcaataacttaagctcaatactttattatctaaca 2628354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 296 - 416
Target Start/End: Complemental strand, 12814717 - 12814595
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaaaattaca-gggaaaaaactggaaatgacctatatta 394  Q
    |||||||||||||| ||||||||||||||||||||        ||||||| |||||||| ||||||||||| |||| |||||   |||||||||||||||    
T  12814717 tgtttggcctatta-agggggtaaatcaaaacaaaaacattttacagggggtaaataaaaaaaaaattacaggggagaaaaccacaaatgacctatatta 12814619  T
Q  395 caggg--ataaagacctattaacc 416  Q
    |||||   ||||||||||||||||    
T  12814618 caggggagtaaagacctattaacc 12814595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 416
Target Start/End: Original strand, 3951538 - 3951658
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaaaattaca-gggaaaaaactggaaatgacctatatta 394  Q
    |||||||||||||||  ||||||||||||||||||        ||||||  |||||||||||||||||||| |||| ||||| ||||||||| |||||||    
T  3951538 tgtttggcctattag--ggggtaaatcaaaacaaaaagattttacagggcgtaaataaataaaaaattacaggggagaaaaccggaaatgacatatatta 3951635  T
Q  395 cagg-gataaagacctattaacc 416  Q
     ||| | ||||||||||||||||    
T  3951636 taggaggtaaagacctattaacc 3951658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 46963110 - 46963176
Alignment:
Q  87 ctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    ||||| |||||||||||||||||||||| ||| |||| |||||||| ||||| ||||||||||||||    
T  46963110 ctaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaacat 46963176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 416
Target Start/End: Complemental strand, 38193084 - 38192963
Alignment:
Q  298 tttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaat--aaataaaaaattacagggaaaaaactggaaatgacctatattac 395  Q
    |||||||||||||||||| ||||||||||||||        ||||||| |||||  ||||||||  ||||||||| ||||  ||||||||||||||||||    
T  38193084 tttggcctattagagggg-taaatcaaaacaaaaatattttacagggggtaaatcaaaataaaattttacagggagaaaatcggaaatgacctatattac 38192986  T
Q  396 a--gggataaagacctattaacc 416  Q
    |  ||| ||||||||||||||||    
T  38192985 aggggggtaaagacctattaacc 38192963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 46964450 - 46964529
Alignment:
Q  74 atatataataaac-ctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||||||  ||||| ||||||||| |||||||||||| ||| |||| |||||||| ||| | |||||||||||||    
T  46964450 atatataataaaatctaatggactctaacgtactaatataaatgcccaataacttaagcctaatcctttattatctaaca 46964529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 13797494 - 13797417
Alignment:
Q  342 ggggataaataaataaaaaattac-agggaaaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    ||||||||||||| |||||||||| ||||  ||||| ||||||||| |||||||||  ||| ||||||||||||||||    
T  13797494 ggggataaataaaaaaaaaattacaagggggaaaaccggaaatgacttatattacaggggggtaaagacctattaacc 13797417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 16902338 - 16902392
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    |||||||| ||||||   |||||||||||||||||||| ||||||||||||||||    
T  16902338 ttacaggggaaaaaccaaaaatgacctatattacaggggtaaagacctattaacc 16902392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 21811308 - 21811274
Alignment:
Q  506 gtgaggtataataaagaagtttctaataattatcc 540  Q
    |||||||||||||||||||||||||||||||||||    
T  21811308 gtgaggtataataaagaagtttctaataattatcc 21811274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 44414097 - 44414135
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacctt 418  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  44414097 aaatgacctatattacaggggtaaagacctattaacctt 44414135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 48104546 - 48104508
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacctt 418  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  48104546 aaatgacctatattacaggggtaaagacctattaacctt 48104508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 39065439 - 39065386
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaa 414  Q
    |||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||    
T  39065439 ttacaggggaaaaaccggaaatgacctatattacagggggtaaagacctattaa 39065386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 416
Target Start/End: Complemental strand, 4103859 - 4103738
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaa-aattacagggaaaaaactggaaatgacctatatta 394  Q
    |||||||||||||||  ||||||||| ||||||||        ||||||| ||||| || |||| ||||||||||   |||||| |||| ||||||||||    
T  4103859 tgtttggcctattag--ggggtaaataaaaacaaattttatttacagggggtaaattaaaaaaataattacaggggggaaactgaaaataacctatatta 4103762  T
Q  395 ca--gggataaagacctattaacc 416  Q
    ||  ||||||||||||||||||||    
T  4103761 caatgggataaagacctattaacc 4103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 6841488 - 6841547
Alignment:
Q  93 gactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    |||||||||||||| ||||||||||| |||| |||||| || |||  |||||||||||||    
T  6841488 gactctaacttactgatataaaggcccaataacttaagtccgatattttattatctaaca 6841547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 9915707 - 9915652
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||||| |||||||| |||| |||||||||||| ||| ||||||||||||||||    
T  9915707 ttacaggggaaaaactgaaaataacctatattacagggggtaaagacctattaacc 9915652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 9923619 - 9923564
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||||| |||||||| |||| |||||||||||| ||| ||||||||||||||||    
T  9923619 ttacaggggaaaaactgaaaataacctatattacagggggtaaagacctattaacc 9923564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 416
Target Start/End: Complemental strand, 3951429 - 3951384
Alignment:
Q  373 aaactggaaatgacctatattacag--ggataaagacctattaacc 416  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||    
T  3951429 aaaccggaaatgacctatattacagagggataaagacctattaacc 3951384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 6269607 - 6269529
Alignment:
Q  339 acaggggataaataaataaaaaatt--acagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||| |||||||| |||| |||  ||||||||||  ||| ||||||||||||||||| ||| ||||||||||||||||    
T  6269607 acagggggtaaataaaaaaaatattttacagggaaaa--ctgaaaatgacctatattacagggggtaaagacctattaacc 6269529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 415
Target Start/End: Complemental strand, 39118917 - 39118883
Alignment:
Q  381 aatgacctatattacagggataaagacctattaac 415  Q
    ||||||||||||||||| |||||||||||||||||    
T  39118917 aatgacctatattacagagataaagacctattaac 39118883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 39580156 - 39580222
Alignment:
Q  352 aaataaaaaatt-acagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||||||||| |||||   ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  39580156 aaataaaaaatttacaggaggaaaaccggaaatgacctatattacagggggtaaagacctattaacc 39580222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 48643690 - 48643620
Alignment:
Q  83 aaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    ||||||||| ||||||||||| |||||||||||||| || | ||||| || ||||  |||| |||||||||    
T  48643690 aaacctaatagactctaacttgctaatataaaggcccaaaaacttaaacctaatattttatcatctaacat 48643620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 6840638 - 6840695
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggcctaatagcttaag 130  Q
    |||||||||||| |||||  |||||||||||||| ||||||||||| |||| ||||||    
T  6840638 atatataataaaacctaacggactctaacttactgatataaaggcccaataacttaag 6840695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 16902150 - 16902106
Alignment:
Q  372 aaaactggaaatgacctatattacagggataaagacctattaacct 417  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||    
T  16902150 aaaaccggaaatgacctatattagaggg-taaagacctattaacct 16902106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 21298264 - 21298301
Alignment:
Q  380 aaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21298264 aaatgacctatattacaagggataaagacctattaacc 21298301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 21814546 - 21814517
Alignment:
Q  21 aatacaaaaaatagattaacattacaaaag 50  Q
    ||||||||||||||||||||||||||||||    
T  21814546 aatacaaaaaatagattaacattacaaaag 21814517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 399
Target Start/End: Complemental strand, 24478080 - 24478043
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattacaggg 399  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  24478080 ttacaggggaaaaaccggaaatgacctatattacaggg 24478043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 24555896 - 24555957
Alignment:
Q  356 aaaaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| |||||||| ||||||  |||||||||||||||||| ||| |||| |||||||||||    
T  24555896 aaaaatttacaggggaaaaaccagaaatgacctatattacagggggtaaaaacctattaacc 24555957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Complemental strand, 27241598 - 27241545
Alignment:
Q  346 ataaataaataaaaaattacagggaaaaaactggaaatgacctatattacaggg 399  Q
    ||||| ||| |||||||||||||||||||||   ||||||| ||||||||||||    
T  27241598 ataaaaaaaaaaaaaattacagggaaaaaacaaaaaatgacatatattacaggg 27241545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 31307897 - 31307865
Alignment:
Q  372 aaaactggaaatgacctatattacagggataaa 404  Q
    ||||||||||||||||||||||||| |||||||    
T  31307897 aaaactggaaatgacctatattacaaggataaa 31307865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 18088166 - 18088244
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  18088166 atatataataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatccaaca 18088244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 16463045 - 16462968
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaac 151  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||||||||    
T  16463045 atatataataaacctaatggactctaacttactaatataaaggcttaatatcttaagctcaatactttattatctaac 16462968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 814412 - 814499
Alignment:
Q  65 agagaatatatatataataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||||||||||||| |  ||||||||| |||||||||||||||||||||| ||| |||| |||||| ||||||| ||||||||||||||    
T  814412 agagaatatatata-acgaaacctaatggactctaacttactaatataaatgcccaataacttaagtccaatactttattatctaacat 814499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 814329 - 814260
Alignment:
Q  83 aaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||| |||||||||||||||||||||| ||| |||| |||||| ||||||| |||||||||||||    
T  814329 aaacctaatggactctaacttactaatataaatgcccaataacttaagtccaatactttattatctaaca 814260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 46691481 - 46691560
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||||||||||| ||||| ||||||||||||||| |||||||| | |||| ||||||  |||||| ||||||||||||||    
T  46691481 atatataataaaactaatggactctaacttactagtataaaggtccaataacttaagttcaatactttattatctaacat 46691560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 416
Target Start/End: Original strand, 18465077 - 18465155
Alignment:
Q  341 aggggataaataaataaaaaattacaggg-aaaaaactggaaatgacctatattacaggg--ataaagacctattaacc 416  Q
    ||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||   ||||||||||||||||    
T  18465077 agggggtaaataaataaaaaattgcagggaaaaaaaccggaaatgacctatattactggggagtaaagacctattaacc 18465155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 50297518 - 50297459
Alignment:
Q  94 actctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||||||||||||||||||||| |  |||| ||||||| |||||| ||||||||||||||    
T  50297518 actctaacttactaatataaagactcaataacttaagcacaatactttattatctaacat 50297459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 15309139 - 15309085
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    |||||||| |||||| |||||| ||||||||||||||| |||| |||||||||||    
T  15309139 ttacaggggaaaaaccggaaataacctatattacaggggtaaaaacctattaacc 15309085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 44172917 - 44172951
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaa 330  Q
    |||||||||||||||||||||||||||||||||||    
T  44172917 tgtttggcctattagagggggtaaatcaaaacaaa 44172951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 44179617 - 44179651
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaa 330  Q
    |||||||||||||||||||||||||||||||||||    
T  44179617 tgtttggcctattagagggggtaaatcaaaacaaa 44179651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 29013486 - 29013426
Alignment:
Q  341 aggggataaataaataaaaaa--ttacagggaaaaaactggaaatgacctatattacaggg 399  Q
    ||||||||||| || ||||||  |||||||||||||||  |||||||||||||||||||||    
T  29013486 aggggataaatcaaaaaaaaaatttacagggaaaaaaccagaaatgacctatattacaggg 29013426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 42531368 - 42531288
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||||||||||| ||||||  ||| ||||||||||||||||| | | |||| || ||||||||| | ||||||||||||||    
T  42531368 atatataataaaacctaatgaactttaacttactaatataaaagtccaataactcaagcccaatcctttattatctaacat 42531288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 50294735 - 50294657
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||||||||||| |||||| |||||||||||| ||||||||||| | |||| |||||| ||||||| |||| |||||||||    
T  50294735 atatataataaaacctaatggactctaacttattaatataaaggtc-aataacttaag-ccaatactttatcatctaacat 50294657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 3072498 - 3072422
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaa-aaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||||| ||||||||  |||||||||||||   |||| || |||||||||||||||||| | ||||||||||||||||    
T  3072498 acagggggtaaataaa--aaaaattacagggtggaaaattgaaaatgacctatattacagaggtaaagacctattaacc 3072422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 4700022 - 4699976
Alignment:
Q  372 aaaactggaaatgacctatattacaggga--taaagacctattaacc 416  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||    
T  4700022 aaaaccggaaatgacctatattacagggaggtaaagacctattaacc 4699976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 8827436 - 8827479
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaa 414  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  8827436 aaaactggaaatgacctatattacagggggtaaagacctattaa 8827479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 47117415 - 47117340
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattacaggg-ataaagacctattaacc 416  Q
    |||||||||||||||| ||||||||||| ||| ||||  |||||||||  |||||||||||  ||||||||||||||||    
T  47117415 acaggggataaataaaaaaaaaattaca-ggagaaaatcggaaatgac--atattacagggtgtaaagacctattaacc 47117340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 49872950 - 49873005
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||||  ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  49872950 ttacagggggaaaaccggaaatgacctatattacagggggtaaagacctattaacc 49873005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 53806656 - 53806597
Alignment:
Q  356 aaaaaattacagggaaaaaactggaaatgacctatattacagggataaagacctattaac 415  Q
    ||||||||| || | |||||| |||||||||||||||||||||   ||||||||||||||    
T  53806656 aaaaaattatagaggaaaaaccggaaatgacctatattacaggagaaaagacctattaac 53806597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 16463086 - 16463057
Alignment:
Q  21 aatacaaaaaatagattaacattacaaaag 50  Q
    ||||||||||||||||||||||||||||||    
T  16463086 aatacaaaaaatagattaacattacaaaag 16463057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 19598780 - 19598747
Alignment:
Q  372 aaaactggaaatgacctatattacagggataaag 405  Q
    |||||||||||||||||||||||||||| |||||    
T  19598780 aaaactggaaatgacctatattacaggggtaaag 19598747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 19624029 - 19624066
Alignment:
Q  380 aaatgacctatattacag-ggataaagacctattaacc 416  Q
    |||||||||||||||||| |||||||||||||||||||    
T  19624029 aaatgacctatattacagaggataaagacctattaacc 19624066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 22949293 - 22949248
Alignment:
Q  371 aaaaactggaaatgacctatattaca-gggataaagacctattaac 415  Q
    |||||| ||||||||||||||||||| ||| |||||||||||||||    
T  22949293 aaaaaccggaaatgacctatattacagggggtaaagacctattaac 22949248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 25109898 - 25109834
Alignment:
Q  352 aaataaaaaattacagggaaaaaactggaaatgacctatattacag-ggataaagacctattaacc 416  Q
    ||||||||| ||||||||| |||||   ||||||||||||||||||  ||||||||||||||||||    
T  25109898 aaataaaaatttacaggga-aaaaccataaatgacctatattacagaagataaagacctattaacc 25109834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 26927736 - 26927797
Alignment:
Q  356 aaaaaattacag-ggaaaaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    |||||||||||| ||| |||| |||||||||||||||||| |||| |||| || ||||||||    
T  26927736 aaaaaattacagaggagaaaattggaaatgacctatattataggggtaaaaacttattaacc 26927797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 412
Target Start/End: Complemental strand, 40462597 - 40462525
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattaca--gggataaagacctatt 412  Q
    |||||||||||||||| |||||||||||||  ||||||  ||| ||||||||||||||  ||| ||||||||||||    
T  40462597 acaggggataaataaa-aaaaaattacagg--aaaaaccagaagtgacctatattacaagggggtaaagacctatt 40462525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 415
Target Start/End: Original strand, 47117548 - 47117609
Alignment:
Q  356 aaaaaattacaggga-aaaaactggaaatgacctatattac-agggataaagacctattaac 415  Q
    ||||||||||||||  |||||| ||| |||||||||||||| |||| |||||||||||||||    
T  47117548 aaaaaattacagggggaaaaaccggatatgacctatattacaaggggtaaagacctattaac 47117609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 5416100 - 5416064
Alignment:
Q  379 gaaatgacctatattacagggataaagacctattaac 415  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  5416100 gaaataacctatattacaggggtaaagacctattaac 5416064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 35460708 - 35460664
Alignment:
Q  356 aaaaaattacagggaa-aaaactggaaatgacctatattacaggg 399  Q
    |||||||||||||| | |||||| |||||||||||||||||||||    
T  35460708 aaaaaattacaggggagaaaactagaaatgacctatattacaggg 35460664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 43767911 - 43767947
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacc 416  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  43767911 aaatgacctatactacaggggtaaagacctattaacc 43767947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 49880749 - 49880793
Alignment:
Q  373 aaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||    
T  49880749 aaaccggaaatgacctatattacagggggtaaagacctattaacc 49880793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 51252302 - 51252341
Alignment:
Q  379 gaaatgacctatattaca--gggataaagacctattaacc 416  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  51252302 gaaatgacctatattacagggggataaagacctattaacc 51252341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 296 - 418
Target Start/End: Complemental strand, 956 - 835
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattac 395  Q
    |||||||||||||||  ||||||||||||||||||        ||||||| |||||||| ||||||||||||   ||||||| |||||||||||||||||    
T  956 tgtttggcctattag--ggggtaaatcaaaacaaaaatattttacagggggtaaataaaaaaaaaattacagaagaaaaactagaaatgacctatattac 859  T
Q  396 ag-ggataaagacctattaacctt 418  Q
    || |||||||||||||||||||||    
T  858 agaggataaagacctattaacctt 835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 1160 - 1198
Alignment:
Q  379 gaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  1160 gaaatgacctatattacaagggataaagacctattaacc 1198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 296 - 418
Target Start/End: Complemental strand, 25927008 - 25926887
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattac 395  Q
    |||||||||||||||  ||||||||||||||||||        ||||||| |||||||| ||||||||||||   ||||||| |||||||||||||||||    
T  25927008 tgtttggcctattag--ggggtaaatcaaaacaaaaatattttacagggggtaaataaaaaaaaaattacagaagaaaaactagaaatgacctatattac 25926911  T
Q  396 ag-ggataaagacctattaacctt 418  Q
    || |||||||||||||||||||||    
T  25926910 agaggataaagacctattaacctt 25926887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 8986991 - 8986926
Alignment:
Q  88 taattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||| |||||||||||||||||||||| ||| |||| |||||||| ||||| ||||||||||||||    
T  8986991 taatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaacat 8986926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 32291234 - 32291154
Alignment:
Q  74 atatataataaacct-aattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||||||||||| || ||| ||||||||||||||||||||||| |  |||| ||||||| |||||| ||||||||||||||    
T  32291234 atatataataaatcttaatggactctaacttactaatataaagacacaataacttaagctcaatactttattatctaacat 32291154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 1172797 - 1172875
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    |||||||||||| | ||| |||||||| ||| |||||| |||||||||||| |||||  |||||| |||||||||||||    
T  1172797 atatataataaatcgaatggactctaatttattaatattaaggcctaatagtttaagtacaatactttattatctaaca 1172875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 10374319 - 10374385
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattacagggataaag 405  Q
    ||||||| |||||||| |||||||||||||| |||||  | |||||||||||||||||||| |||||    
T  10374319 acagggggtaaataaaaaaaaaattacaggggaaaaatcgaaaatgacctatattacaggggtaaag 10374385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 27010165 - 27010222
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattaca 396  Q
    ||||||| ||||||||||||||||||||||| |||||  |||||| ||||||||||||    
T  27010165 acaggggttaaataaataaaaaattacaggggaaaaatcggaaataacctatattaca 27010222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 32277008 - 32276940
Alignment:
Q  83 aaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||| |||||||||||||||||||||||| | |||| ||||||| |||||| | |||||||||||    
T  32277008 aaacctaatggactctaacttactaatataaaggtccaataacttaagctcaatac-taattatctaaca 32276940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 29409118 - 29409182
Alignment:
Q  88 taattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    |||| |||||||||||||||| ||||| ||  |||||||||||| |||||| |||||||||||||    
T  29409118 taatggactctaacttactaaaataaatgctcaatagcttaagcacaatactttattatctaaca 29409182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 38358470 - 38358529
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattacaggg 399  Q
    ||||||| |||||||| ||||||| ||||||  ||||||||||||||||||||||||||||    
T  38358470 acagggggtaaataaaaaaaaaat-acagggggaaaactggaaatgacctatattacaggg 38358529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 8985653 - 8985574
Alignment:
Q  74 atatataataaac-ctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||||||  ||||| |||| ||||||||||||||||| | | |||| |||||||| ||||| |||||||||||||    
T  8985653 atatataataaaatctaatggactttaacttactaatataaatgtccaataacttaagcctaatactttattatctaaca 8985574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 22116233 - 22116156
Alignment:
Q  342 ggggataaataaataaaaaa--ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||| |||||||||||||||  ||||||||  ||||| | ||||||||||||||||| ||| ||||||||||||||||    
T  22116233 gggggtaaataaataaaaaaatttacagggggaaaaccgaaaatgacctatattacagggggtaaagacctattaacc 22116156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 25077506 - 25077429
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaa-aaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||||| |||||||| |||||||||||||| | ||||| | |||||||||||||||||| | |||||| |||||||||    
T  25077506 acagggggtaaataaa-aaaaaattacaggggagaaaaccgaaaatgacctatattacagaggtaaagatctattaacc 25077429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 9012004 - 9012041
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacct 417  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9012004 aaatgaactatattacagggataaagacctattaacct 9012041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 38583546 - 38583603
Alignment:
Q  96 tctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    ||||||||||||||||||||||| ||||  ||||||| ||||  ||||||||||||||    
T  38583546 tctaacttactaatataaaggcccaataatttaagcctaatattttattatctaacat 38583603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 39094261 - 39094200
Alignment:
Q  356 aaaaaattacagggaa-aaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    |||||||||||||||  ||||| |||| | ||||||||||||||| ||||||||||||||||    
T  39094261 aaaaaattacagggaggaaaaccggaactaacctatattacaggggtaaagacctattaacc 39094200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 85507 - 85440
Alignment:
Q  352 aaataaaaaatt-acagggaaaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    |||||||||||| |||||| |||||| | |||||||||||||||||  ||| ||||||||||||||||    
T  85507 aaataaaaaatttacaggggaaaaaccgaaaatgacctatattacaagggggtaaagacctattaacc 85440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 85689 - 85725
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacc 416  Q
    |||||||||||||||||||| ||||||||||||||||    
T  85689 aaatgacctatattacaggggtaaagacctattaacc 85725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 2809829 - 2809903
Alignment:
Q  347 taaataaataaa--aaattaca-gggaaaaaactggaaatgacctatattacaggga--taaagacctattaacc 416  Q
    ||||||||||||  |||||||| ||||||||| || ||||||||||||||||| |||  ||||||||||||||||    
T  2809829 taaataaataaataaaattacaagggaaaaaattgaaaatgacctatattacatggagttaaagacctattaacc 2809903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 416
Target Start/End: Complemental strand, 20182384 - 20182265
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattac 395  Q
    ||||||||||||||| ||||||||||||||||||         | ||||| |||||||| ||||| ||||||||  ||||  | ||||||||||||||||    
T  20182384 tgtttggcctattag-gggggtaaatcaaaacaatttttttttatagggg-taaataaaaaaaaatttacagggggaaaatcgaaaatgacctatattac 20182287  T
Q  396 a-gggataaagacctattaacc 416  Q
    | |||||||| |||||||||||    
T  20182286 aggggataaaaacctattaacc 20182265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 37200384 - 37200348
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacc 416  Q
    |||||||||||||||||||| ||||||||||||||||    
T  37200384 aaatgacctatattacaggggtaaagacctattaacc 37200348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 38385982 - 38385934
Alignment:
Q  371 aaaaactggaaatgacctatattaca-gggataaagacctattaacctt 418  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  38385982 aaaaaccggaaatgacctatattacagggggtaaagacctattaacctt 38385934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 41089211 - 41089155
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattacag-ggataaagacctattaacct 417  Q
    |||||||| ||||| || |||||||||||||||||| || |||||||||||||||||    
T  41089211 ttacaggggaaaaattgaaaatgacctatattacagaggttaaagacctattaacct 41089155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 45464542 - 45464465
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattac--agggataaagacctattaacc 416  Q
    |||||||||||||||| |||||| |||| || |||| | | ||||||||||||||||  |||||||||||||||||||||    
T  45464542 acaggggataaataaa-aaaaaactacaagggaaaatcag-aaatgacctatattacttagggataaagacctattaacc 45464465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 10851702 - 10851749
Alignment:
Q  372 aaaactggaaatgacctatattacaggga-taaagacctattaacctt 418  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  10851702 aaaaccggaaatgacctatattacagggagtaaagatctattaacctt 10851749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 397
Target Start/End: Original strand, 21302252 - 21302299
Alignment:
Q  351 taaataaaaaattacagggaaaaaact-ggaaatgacctatattacag 397  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||||    
T  21302252 taaataaaaaaatacagggaaaaaaatcggaaatgacctatattacag 21302299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 34428866 - 34428921
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattacagg-gataaagacctattaacc 416  Q
    |||||| |||||||| ||||||||||||||||| ||| | ||||||||||||||||    
T  34428866 ttacagagaaaaaaccggaaatgacctatattataggaggtaaagacctattaacc 34428921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 9011808 - 9011758
Alignment:
Q  368 ggaaaaaactggaaatgacctatattacag-gga-taaagacctattaacc 416  Q
    |||||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  9011808 ggaaaaaactggaaatgacctatattacagtggagtaaagatctattaacc 9011758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 18701589 - 18701551
Alignment:
Q  380 aaatgacctatattacaggg-ataaagacctattaacct 417  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  18701589 aaatgacctatattacaggggataaagacctattaacct 18701551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 25927139 - 25927177
Alignment:
Q  379 gaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25927139 gaaatgacctatattacaagggataaagacctattaacc 25927177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 41089403 - 41089441
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacctt 418  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  41089403 aaatgacttatattacaggggtaaagacctattaacctt 41089441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 17328138 - 17328093
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  17328138 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 17328093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 19641492 - 19641447
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  19641492 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 19641447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 19840085 - 19840040
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  19840085 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 19840040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 23260358 - 23260321
Alignment:
Q  380 aaatgacctatattacaggga-taaagacctattaacc 416  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  23260358 aaatgacctatattacagggagtaaagacctattaacc 23260321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 30371423 - 30371386
Alignment:
Q  380 aaatgacctatattacaggga-taaagacctattaacc 416  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  30371423 aaatgacctatattacagggagtaaagacctattaacc 30371386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 32449750 - 32449689
Alignment:
Q  356 aaaaaattacagggaa-aaaactggaaatgacctatattaca-gggataaagacctattaac 415  Q
    |||||||||||||| | ||||| ||||||||||||||||| | ||| |||||||||||||||    
T  32449750 aaaaaattacaggggagaaaaccggaaatgacctatattaaagggggtaaagacctattaac 32449689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 34635752 - 34635707
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  34635752 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 34635707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 34635943 - 34635999
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    ||||||||  ||||| |||||||||||||||||||  ||| ||||||||||||||||    
T  34635943 ttacagggggaaaaccggaaatgacctatattacaggggggtaaagacctattaacc 34635999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 37147597 - 37147552
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  37147597 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 37147552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 38358345 - 38358285
Alignment:
Q  342 ggggataaataaataaaaaa--ttacagggaaaaaactggaaatgacctatattacaggga 400  Q
    |||| |||||||||||||||  |||||||| ||||||  |||||||||| |||||||||||    
T  38358345 gggggtaaataaataaaaaaatttacaggggaaaaaccagaaatgacctttattacaggga 38358285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 43302108 - 43302169
Alignment:
Q  356 aaaaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||| ||| |||||| ||||| | |||| |||||||||||| ||||||||||||||||||||    
T  43302108 aaaatattgcagggagaaaaccgaaaataacctatattacatgggataaagacctattaacc 43302169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 27010047 - 27009971
Alignment:
Q  339 acaggggataaataaataaaaaattacagg-gaaaaaactggaaatgacctatattacagggataaagacctattaa 414  Q
    ||||| |||||||||| ||||||||||| | || ||||  |||||||||||||||| |  || ||||||||||||||    
T  27010047 acaggagataaataaaaaaaaaattacaagagagaaaatcggaaatgacctatattcctagggtaaagacctattaa 27009971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 43301942 - 43301882
Alignment:
Q  356 aaaaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaac 415  Q
    ||||||||||||||  ||| |  |||||||||||||||||| ||| |||||||||||||||    
T  43301942 aaaaaattacagggggaaagccagaaatgacctatattacagggggtaaagacctattaac 43301882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 10741850 - 10741771
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||||||||||| ||||| ||||||||||| ||||||||||| || |||| |||||||||||||  ||||||||||||||    
T  10741850 atatataataaatctaatggactctaactttctaatataaagacccaataacttaagcccaatattttattatctaacat 10741771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 21862768 - 21862689
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    |||||||||||| ||||||  |||||||||| ||||||||||| || |||||||||||| |||||| |||||||||||||    
T  21862768 atatataataaaacctaatgcactctaacttgctaatataaagacccaatagcttaagctcaatactttattatctaaca 21862689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 17441479 - 17441403
Alignment:
Q  341 aggggataaataaataaaaaattacagggaa-aaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||| |||||||||||||| ||||||||   ||||| | |||||||||||||||||||| ||||||||||||||||    
T  17441479 agggggtaaataaataaaaagttacagggtgtaaaaccgaaaatgacctatattacaggggtaaagacctattaacc 17441403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 418
Target Start/End: Complemental strand, 30381644 - 30381565
Alignment:
Q  341 aggggataaataaataaaaaattacaggga-aaaaactggaaatgacctatattaca-gggataaagacctattaacctt 418  Q
    ||||| ||||||||||||||||||||| ||  ||||| | |||| |||||||||||| ||||||||||||||||||||||    
T  30381644 agggggtaaataaataaaaaattacagtgaggaaaaccgaaaataacctatattacaggggataaagacctattaacctt 30381565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 352 - 417
Target Start/End: Original strand, 1319337 - 1319403
Alignment:
Q  352 aaataaaaaatt-acagggaaaaaactggaaatgacctatattacagggataaagacctattaacct 417  Q
    |||||||||||| |||||| |||||  |||||| |||||||||||| ||||||||||||||||||||    
T  1319337 aaataaaaaatttacaggggaaaaatcggaaatcacctatattacaaggataaagacctattaacct 1319403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 296 - 413
Target Start/End: Complemental strand, 34715807 - 34715691
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaaaattacagg-gaaaaaactggaaatgacctatatta 394  Q
    |||||||||||||||  ||||||||||||||||||        ||||| | |||||||| ||||||||||| | ||  |||| |||||||||||||||||    
T  34715807 tgtttggcctattag--ggggtaaatcaaaacaaatttttttcacaggaggtaaataaaaaaaaaattacaagagaggaaaccggaaatgacctatatta 34715710  T
Q  395 cagggataaagacctatta 413  Q
    || || |||||||||||||    
T  34715709 catgggtaaagacctatta 34715691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 5953229 - 5953163
Alignment:
Q  352 aaataaaaaatt--acagggaaaaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||||||||||  ||| ||| |||||  ||||||||||||||||||||| ||||||||||||||||    
T  5953229 aaataaaaaattttacatggagaaaaccagaaatgacctatattacaggggtaaagacctattaacc 5953163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 10740650 - 10740574
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||||||| |||| |||||||| || ||||||||||| |  |||| |||||||||||||  |||||||||||||    
T  10740650 atatataataaacgtaatggactctaatttgctaatataaagac--aataacttaagcccaatattttattatctaaca 10740574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 18247170 - 18247225
Alignment:
Q  363 tacagggaaaaaactggaaatgacctatattacag-gga-taaagacctattaacc 416  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||    
T  18247170 tacagggaaaaaactggaaatgacatatattacagaggagtaaagacctattaacc 18247225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 33424009 - 33424087
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaac 151  Q
    |||||||||||| ||||||  ||| |||||||||||||||||| |  |||| ||||||| |||||| ||||||||||||    
T  33424009 atatataataaaacctaatgaactttaacttactaatataaagacgcaataacttaagctcaatactttattatctaac 33424087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 18984576 - 18984496
Alignment:
Q  74 atatataataaacc-taattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||||||||||| | ||||  ||||||||||||||||||||||||| ||||   |||||||||||  ||||||| ||||||    
T  18984576 atatataataaaacataatgtactctaacttactaatataaaggcccaataatctaagcccaatattttattatttaacat 18984496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 34715883 - 34715962
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacctt 418  Q
    ||||||| |||||||| ||||||||||||||  ||||  |||||| |||||||||||| ||| |||||| |||||||||||    
T  34715883 acaggggttaaataaa-aaaaaattacagggggaaaatcggaaataacctatattacagggggtaaagaactattaacctt 34715962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 21858086 - 21858039
Alignment:
Q  105 ctaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||||| || |||||||||||| |||||| |||||||||||||    
T  21858086 ctaatataaagacccaatagcttaagctcaatactttattatctaaca 21858039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 29942440 - 29942499
Alignment:
Q  358 aaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||||||||  |||||  |||||||||||||||||| ||| ||||||||||||||||    
T  29942440 aaaattacagggggaaaaccagaaatgacctatattacagggggtaaagacctattaacc 29942499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 4840723 - 4840685
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacctt 418  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  4840723 aaatgaactatattacaggggtaaagacctattaacctt 4840685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 22868540 - 22868490
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggcctaata 123  Q
    |||||||||||| |||||| |||||||||||||||||||||| ||| ||||    
T  22868540 atatataataaaacctaatggactctaacttactaatataaaagcccaata 22868490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 24062412 - 24062450
Alignment:
Q  379 gaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24062412 gaaatgacctatattacatgggataaagacctattaacc 24062450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 30245961 - 30245927
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaa 330  Q
    ||||||||||||||| |||||||||||||||||||    
T  30245961 tgtttggcctattagggggggtaaatcaaaacaaa 30245927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 30246072 - 30246118
Alignment:
Q  370 aaaaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    |||||| || |||||||||||||||||||| ||| ||||||||||||    
T  30246072 aaaaaattgaaaatgacctatattacaggggtaacgacctattaacc 30246118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 7922355 - 7922318
Alignment:
Q  380 aaatgacctatattacaggg-ataaagacctattaacc 416  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7922355 aaatgacctatattacaggggataaagacctattaacc 7922318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 31851796 - 31851759
Alignment:
Q  380 aaatgacctatattacaggg-ataaagacctattaacc 416  Q
    |||||||||||||||||||| |||||||||||||||||    
T  31851796 aaatgacctatattacaggggataaagacctattaacc 31851759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 7922509 - 7922591
Alignment:
Q  339 acaggggataaataaataaaa--aattacaggga-aaaaactggaaatgacctatattacagg--gataaagacctattaacc 416  Q
    |||||||||||||||| ||||  | ||||||||| | |||  | |||||||||||||||||||  ||||||||||||||||||    
T  7922509 acaggggataaataaaaaaaaatatttacagggacacaaatcgaaaatgacctatattacaggatgataaagacctattaacc 7922591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 9290686 - 9290730
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggc 117  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||    
T  9290686 atatataataaaacctaatggactctaacttattaatataaaggc 9290730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 10343801 - 10343857
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattacagggataaagacctattaacctt 418  Q
    |||||||| |||||| ||||||||| |||||||||||| ||||   |||||||||||    
T  10343801 ttacaggggaaaaaccggaaatgacatatattacaggggtaaaacactattaacctt 10343857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 20979763 - 20979799
Alignment:
Q  379 gaaatgacctatattacag-ggataaagacctattaa 414  Q
    ||||||||||||||||||| |||||||||||||||||    
T  20979763 gaaatgacctatattacagtggataaagacctattaa 20979799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 54148353 - 54148275
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    |||||||||||| ||| | |||||||||||||||||||||| |||||||||||||||| |||| | || ||||||||||    
T  54148353 atatataataaatctattggactctaacttactaatataaaagcctaatagcttaagctcaatgctttgttatctaaca 54148275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 16871730 - 16871650
Alignment:
Q  74 atatataataaac-ctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    ||||||||||||  ||||| |||||||||||||||||||||| ||| |||| |||||||| ||||| ||||||||||||||    
T  16871730 atatataataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaacat 16871650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 54146692 - 54146612
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaag--gcctaatagcttaagcccaatacattattatctaaca 152  Q
    |||||| ||||| ||||| |||||||||||||||||||||||  ||||||||| ||||||  ||||| |||||||||||||    
T  54146692 atatatgataaatctaatggactctaacttactaatataaaggcgcctaatagtttaagcttaatactttattatctaaca 54146612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 416
Target Start/End: Complemental strand, 1386078 - 1386035
Alignment:
Q  373 aaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  1386078 aaactagaaatgacctatattacagggataaagacctattaacc 1386035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 54130425 - 54130364
Alignment:
Q  354 ataaaaaattacagggaaaaaactggaaatgacctatattacagggataaagacctattaac 415  Q
    ||||||| |||||||| ||||||  ||||||| ||||||||||||| |||||||||||||||    
T  54130425 ataaaaatttacaggggaaaaaccagaaatgatctatattacaggggtaaagacctattaac 54130364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 416
Target Start/End: Original strand, 16482234 - 16482339
Alignment:
Q  312 gggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaaaattacagg-gaaaaaactggaaatgacctatattacagggataaagaccta 410  Q
    |||||||||||||||||||        ||||||| |||||||| ||||||||||||  | ||||||  ||||||||||||||||||||| |||| | |||    
T  16482234 gggggtaaatcaaaacaaaaatattttacagggggtaaataaaaaaaaaattacagatggaaaaaccagaaatgacctatattacaggggtaaaaatcta 16482333  T
Q  411 ttaacc 416  Q
    ||||||    
T  16482334 ttaacc 16482339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 37273403 - 37273451
Alignment:
Q  369 gaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  37273403 gaaaaaactggaaatgacctatattacagggggtaaagacctattaacc 37273451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 418
Target Start/End: Original strand, 40696197 - 40696263
Alignment:
Q  352 aaataaaaaatt-acagggaaaaaactggaaatgacctatattacagggataaagacctattaacctt 418  Q
    |||||||||||| ||||||| ||||| | ||||||| |||||||||||| ||||||||||||||||||    
T  40696197 aaataaaaaatttacagggagaaaaccgaaaatgacatatattacaggg-taaagacctattaacctt 40696263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 7272347 - 7272267
Alignment:
Q  339 acaggggataaataaataaaaaattaca-gggaaaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    ||||||| |||||||||||||||||||| |||  ||||| | |||| ||||||||||||  ||| ||||||||||||||||    
T  7272347 acagggggtaaataaataaaaaattacaggggggaaaaccgaaaataacctatattacaagggggtaaagacctattaacc 7272267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 51965418 - 51965373
Alignment:
Q  372 aaaactggaaatgacctatattacaggga-taaagacctattaacc 416  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  51965418 aaaaccggaaatgacctatattacagggagtaaagacctattaacc 51965373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 21798577 - 21798621
Alignment:
Q  373 aaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||    
T  21798577 aaactgaaaatgacctatattacaggggataaagacctattaacc 21798621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 16543439 - 16543360
Alignment:
Q  74 atatataataaacctaattga-ctctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    |||||||||||| || | ||| |||||||||||||||||||| | | |||| |||||| ||| ||| |||||||||||||    
T  16543439 atatataataaaacttaatgaactctaacttactaatataaaaggccaataacttaagtccattactttattatctaaca 16543360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 16869564 - 16869513
Alignment:
Q  94 actctaacttactaatataaaggcctaatagcttaagcccaatacattatta 145  Q
    ||||||||||||||||||||| ||| |||| ||||||| |||||| ||||||    
T  16869564 actctaacttactaatataaaagcccaataacttaagctcaatactttatta 16869513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 35539781 - 35539836
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||| ||||||| ||||||||||||||||||| ||| |||| |||||||||||    
T  35539781 ttacaggaaaaaaaccggaaatgacctatattacagggggtaaatacctattaacc 35539836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 11563523 - 11563573
Alignment:
Q  367 gggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||||||  |||||||||||||||||| ||| ||||||||||||||||    
T  11563523 gggaaaaaaccagaaatgacctatattacagggggtaaagacctattaacc 11563573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 14458609 - 14458539
Alignment:
Q  83 aaacctaattgact-ctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||| |||| |||||||| |||||||||| |  ||||||||||||||||| | |||| ||||||||    
T  14458609 aaacctaatagactactaacttagtaatataaagacacaatagcttaagcccaattccttatgatctaaca 14458539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 27579570 - 27579516
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaac 415  Q
    |||||| || ||||| ||||||||||||||||||| ||| |||||||||||||||    
T  27579570 ttacagagagaaaaccggaaatgacctatattacagggggtaaagacctattaac 27579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 46094250 - 46094296
Alignment:
Q  371 aaaaactggaaatgacctatattacag-ggataaagacctattaacc 416  Q
    |||||| |||||||||||||||||||| || ||||||||||||||||    
T  46094250 aaaaaccggaaatgacctatattacagagggtaaagacctattaacc 46094296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 54130518 - 54130588
Alignment:
Q  347 taaataaataaaaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||||| | ||||||||| ||  ||||  ||||||||||||||||| | ||||||||||||||||||||    
T  54130518 taaataaaaataaaattacatggggaaaatcggaaatgacctatattagaggggataaagacctattaacc 54130588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 5401998 - 5402054
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    ||||||||  ||||| |||||||||||||||||||  ||| ||||||||||||||||    
T  5401998 ttacagggggaaaaccggaaatgacctatattacaagggggtaaagacctattaacc 5402054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 15156952 - 15156916
Alignment:
Q  379 gaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  15156952 gaaatgacctatattacaggg-taaagacctattaacc 15156916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 16493564 - 16493519
Alignment:
Q  372 aaaactggaaatgacctatattacagg-gataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||    
T  16493564 aaaaccggaaatgacctatattacaggaggtaaagacctattaacc 16493519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 18320696 - 18320752
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    ||||||||  ||||| |||||||||||||||||||  ||| ||||||||||||||||    
T  18320696 ttacagggggaaaaccggaaatgacctatattacaggggggtaaagacctattaacc 18320752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 20125429 - 20125474
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  20125429 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 20125474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 17800792 - 17800756
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacc 416  Q
    |||||||||||||||||||  ||||||||||||||||    
T  17800792 aaatgacctatattacaggagtaaagacctattaacc 17800756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 19875964 - 19876027
Alignment:
Q  356 aaaaaattacagg-gaaaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    ||||||||||||| | |||||| | |||||||||||||||||  ||| ||||||||||||||||    
T  19875964 aaaaaattacaggaggaaaaaccgaaaatgacctatattacagggggttaaagacctattaacc 19876027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 21780373 - 21780412
Alignment:
Q  379 gaaatgacctatattacaggga--taaagacctattaacc 416  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  21780373 gaaatgacctatattacagggaggtaaagacctattaacc 21780412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 2076924 - 2077012
Alignment:
Q  65 agagaatatatatataataaacctaattgact-ctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    ||||||||||||||  | ||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||  ||||||||||||||    
T  2076924 agagaatatatatacta-aaacctaatggactgctaacttactaatattaaggactaatagcttaagcccaatattttattatctaacat 2077012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 2071557 - 2071641
Alignment:
Q  70 atatatatataataaa-cctaattgact-ctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||||| |||| |||||| |||| ||||||||||||||| |||||| ||||||||||||||||||  |||||||||||||    
T  2071557 atatatatatactaaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaaca 2071641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 2073392 - 2073479
Alignment:
Q  65 agagaatatatatataataaacctaattgact-ctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||||||||  | ||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||  |||||||||||||    
T  2073392 agagaatatatatacta-aaacctaatggactgctaacttactaatattaaggactaatagcttaagcccaatattttattatctaaca 2073479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 15630178 - 15630257
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| ||||  |||||| |||||| ||||||| |||||    
T  15630178 atatataataaaacctaatagactctaacttactaatataaaggcccaataatttaagctcaatactttattatttaaca 15630257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 28665058 - 28664975
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaagg-----cctaatagcttaagcccaatacattattatctaaca 152  Q
    |||||||||||||||||| ||||||||||||||||||||||||      ||||||| |||||| |||||| |||||||||||||    
T  28665058 atatataataaacctaatggactctaacttactaatataaaggtctaatctaatagtttaagctcaatactttattatctaaca 28664975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 2075101 - 2075171
Alignment:
Q  83 aaacctaattgact-ctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||  |||||||||||||    
T  2075101 aaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaaca 2075171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 6696080 - 6696015
Alignment:
Q  87 ctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||| |||||||||||||||||||||| ||| |||| |||||||| ||||| |||||||||||||    
T  6696080 ctaatggactctaacttactaatataaatgcccaataacttaagcctaatactttattatctaaca 6696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 15629379 - 15629459
Alignment:
Q  74 atatataataaac-ctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    ||||||||||||  |||||  ||||||||||||||||||||||| | |||| |||||||||||||  ||||||||||||||    
T  15629379 atatataataaaatctaatgaactctaacttactaatataaaggtccaataacttaagcccaatattttattatctaacat 15629459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 24987687 - 24987609
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||| |||||||| |||   |||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  24987687 acagggggtaaataaaaaaatttttacaggggaaaaaccggaaatgacctatattacagggggtaaagacctattaacc 24987609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 41055098 - 41055179
Alignment:
Q  339 acaggggataaataaataaaaaa-ttacagg-gaaaaaactggaaatgacctatattacagggataaagacctattaacctt 418  Q
    ||||||| ||||||||||||||| ||||||| |  |||||  ||||||||||||||||||||| ||||||| ||||||||||    
T  41055098 acagggggtaaataaataaaaaaattacaggagggaaaaccagaaatgacctatattacaggggtaaagacgtattaacctt 41055179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 13545656 - 13545580
Alignment:
Q  342 ggggataaataaataaaaaattacaggga-aaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||| ||||||||||||||  |||||| ||||||||| ||||||||| ||| ||||||||||||||||    
T  13545656 ggggacaaataaaaaaaaaattacagggggaaaaaccggaaatgacatatattacagggggtaaagacctattaacc 13545580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 35034299 - 35034351
Alignment:
Q  365 cagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  35034299 cagggagaaaaccggaaatgacctatattacaggggataaagacctattaacc 35034351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 25235854 - 25235775
Alignment:
Q  339 acaggggataaataaataaaaaattaca-gggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||| |||||||| ||||||||||| ||| ||||| || || |||||||||||||| ||| ||||||||||||||||    
T  25235854 acagggggtaaataaaaaaaaaattacagggggaaaaaatgaaattgacctatattacagggggtaaagacctattaacc 25235775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 42736822 - 42736877
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||||  ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  42736822 ttacagggggaaaaccggaaatgacctatattacaggggataaagacctattaacc 42736877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 13545742 - 13545843
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaaaattacagg-gaaaaaactggaaatgacctatatta 394  Q
    ||||||||||||||| |||| ||||||||||||||        | ||||| |||||||| ||||||||||||| | |||||| |||||||||||||||||    
T  13545742 tgtttggcctattagcgggg-taaatcaaaacaaactttttttaaagggggtaaataaa-aaaaaattacaggaggaaaaaccggaaatgacctatatta 13545839  T
Q  395 cagg 398  Q
    ||||    
T  13545840 cagg 13545843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 22604668 - 22604718
Alignment:
Q  367 gggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  22604668 gggaaaaaaccggaaatgacctatattacaggggttaaagacctattaacc 22604718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 13738512 - 13738468
Alignment:
Q  356 aaaaaattacaggga-aaaaactggaaatgacctatattacaggg 399  Q
    ||||||||||||||  |||||||||||||||||||||||||||||    
T  13738512 aaaaaattacagggggaaaaactggaaatgacctatattacaggg 13738468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 17746457 - 17746516
Alignment:
Q  339 acaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattacaggg 399  Q
    ||||||| |||||||||||||||||||||||  ||||| | ||||||||||||||| ||||    
T  17746457 acagggggtaaataaataaaaaattacaggg-gaaaaccgaaaatgacctatattataggg 17746516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 28797217 - 28797160
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca---gggataaagacctattaacc 416  Q
    ||||||||| ||||| |||||||||||||||||||   ||| ||||||||||||||||    
T  28797217 ttacagggagaaaaccggaaatgacctatattacagagggggtaaagacctattaacc 28797160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 50596048 - 50596001
Alignment:
Q  369 gaaaaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    |||||||  ||||||||||||||||||| || ||||||||||||||||    
T  50596048 gaaaaaatcggaaatgacctatattacaagggtaaagacctattaacc 50596001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 16698920 - 16698870
Alignment:
Q  367 gggaaaaaactggaaatgacctatattacag-ggataaagacctattaacc 416  Q
    |||||||||| |||||||| ||||||||||| || ||||||||||||||||    
T  16698920 gggaaaaaaccggaaatgatctatattacagagggtaaagacctattaacc 16698870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 416
Target Start/End: Original strand, 30659559 - 30659597
Alignment:
Q  378 ggaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  30659559 ggaaatgacatatattacaggggtaaagacctattaacc 30659597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 416
Target Start/End: Original strand, 34360260 - 34360301
Alignment:
Q  377 tggaaatgacctatattacaggga--taaagacctattaacc 416  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  34360260 tggaaatgacctatattacagggaggtaaagacctattaacc 34360301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 8620177 - 8620230
Alignment:
Q  346 ataaataaataaaaaattacagggaaaaaactggaaatgacctatattacaggg 399  Q
    ||||| ||| ||||| ||||||||  ||||| ||||||||||||||||||||||    
T  8620177 ataaaaaaaaaaaaatttacagggggaaaaccggaaatgacctatattacaggg 8620230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 18458813 - 18458858
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  18458813 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 18458858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 21854005 - 21854054
Alignment:
Q  367 gggaaaaaactggaaatgacctatattac-agggataaagacctattaac 415  Q
    |||||||||| ||||| |||||||||||| |||| |||||||||||||||    
T  21854005 gggaaaaaaccggaaacgacctatattacaaggggtaaagacctattaac 21854054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 28410952 - 28410915
Alignment:
Q  380 aaatgacctatattacaggg-ataaagacctattaacc 416  Q
    |||||||||||||||||||| |||||||||||||||||    
T  28410952 aaatgacctatattacaggggataaagacctattaacc 28410915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 40091705 - 40091742
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattacaggg 399  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  40091705 ttacagggaaaaaattggaaatgacttatattacaggg 40091742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 51904182 - 51904239
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattacag-ggataaagacctattaacctt 418  Q
    |||||| |||||||| ||||||||||||||||| ||  | ||||||||||||||||||    
T  51904182 ttacagagaaaaaaccggaaatgacctatattatagaaggtaaagacctattaacctt 51904239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 28797367 - 28797399
Alignment:
Q  367 gggaaaaaactggaaatgacctatattacaggg 399  Q
    |||||||||| ||||||||||||||||||||||    
T  28797367 gggaaaaaaccggaaatgacctatattacaggg 28797399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 418
Target Start/End: Complemental strand, 44466 - 44390
Alignment:
Q  342 ggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattac-agggataaagacctattaacctt 418  Q
    |||| |||||||| |||||||||||||| |||||| ||||||||| |||||||| |||| ||||||||||||||||||    
T  44466 gggggtaaataaa-aaaaaattacaggggaaaaaccggaaatgacttatattacaaggggtaaagacctattaacctt 44390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 11320507 - 11320585
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||||||  |||| ||||| |||||||||||||||||  | |||| |||||| | |||||||||||||||||||    
T  11320507 atatataataaaattaatggactccaacttactaatataaagagccaataacttaagtctaatacattattatctaaca 11320585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 416
Target Start/End: Complemental strand, 31861616 - 31861492
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaat--aaataaaaaatt-aca-gggaaaaaactggaaatgacctata 391  Q
    ||||||||||||||| |||||||||||||||||||        ||||||| | |||  ||||||||| || ||| ||| |||||| ||||||||||||||    
T  31861616 tgtttggcctattag-gggggtaaatcaaaacaaaaatattttacagggggtgaatcaaaataaaaattttacaaggggaaaaaccggaaatgacctata 31861518  T
Q  392 ttaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||||    
T  31861517 ttacaggggataaagacctattaacc 31861492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 22642242 - 22642143
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattac 395  Q
    |||||||||||||||   |||||||||||||||||        |||||||||||||||| ||||||||||||||  || || | ||||||||||||||||    
T  22642242 tgtttggcctattag---gggtaaatcaaaacaaaaatattttacaggggataaataaa-aaaaaattacagggggaataccgaaaatgacctatattac 22642147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 29104500 - 29104445
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  29104500 ttacagggagaaaactgaaaatgacctatattacagggggtaaagacctattaacc 29104445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 416
Target Start/End: Original strand, 21149032 - 21149156
Alignment:
Q  296 tgtttggcctattagagggggtaaatcaaaacaaannnnnnnaacaggggataaat---aaataaaaaatt-acagggaa-aaaactggaaatgacctat 390  Q
    ||||||||||||||| ||| |||||||||||||||        ||||||| |||||   ||||||||| || |||||||| |||||   |||||||||||    
T  21149032 tgtttggcctattag-gggagtaaatcaaaacaaaaatattttacagggggtaaatcaaaaataaaaattttacagggaagaaaaccaaaaatgacctat 21149130  T
Q  391 attacagggataaagacctattaacc 416  Q
    ||||||||| ||||||||||||||||    
T  21149131 attacaggggtaaagacctattaacc 21149156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 9226907 - 9226854
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattacagggataaagacctattaac 415  Q
    ||||||| ||||||   |||||||||||||||||||||||||||| ||||||||    
T  9226907 ttacaggaaaaaaatcagaaatgacctatattacagggataaagatctattaac 9226854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 15885682 - 15885743
Alignment:
Q  356 aaaaaattaca-gggaaaaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||||||||| |||||||||||  |||||||||||||||||| | ||||| ||||||||||    
T  15885682 aaaaaattacaagggaaaaaacttaaaatgacctatattacagaggtaaagtcctattaacc 15885743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 24137677 - 24137600
Alignment:
Q  74 atatataataaa-cctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaa 150  Q
    |||||||||||| |||||| ||||||||||||||| | |||||||| |||| || |||| |||||| ||||| |||||    
T  24137677 atatataataaaacctaatagactctaacttactagtgtaaaggcccaataactgaagctcaatactttattgtctaa 24137600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 26035095 - 26035139
Alignment:
Q  372 aaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||||    
T  26035095 aaaaccggaaatgacctatattacaggggtaaagacctcttaacc 26035139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 10976748 - 10976803
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||||  ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  10976748 ttacagggggaaaaccggaaatgacctatattacagggggtaaagacctattaacc 10976803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 22642333 - 22642379
Alignment:
Q  372 aaaactggaaatgacctatattac--agggataaagacctattaacc 416  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||||    
T  22642333 aaaactggaaatgacctatattacagaggggtaaagacctattaacc 22642379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 20577523 - 20577469
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattacagggataaagacctattaacc 416  Q
    |||||| ||||||| || |||||||||||||||||| | ||||||| ||||||||    
T  20577523 ttacagagaaaaaattgaaaatgacctatattacagaggtaaagacttattaacc 20577469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 20698522 - 20698576
Alignment:
Q  363 tacagggaaaaaactggaaatgacctatattacaggga-taaagacctattaacc 416  Q
    ||||||| ||||||  |||||||||||||||||||| | ||||||||||||||||    
T  20698522 tacaggggaaaaaccagaaatgacctatattacaggaagtaaagacctattaacc 20698576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 36992993 - 36993039
Alignment:
Q  371 aaaaactggaaatgacctatattacag-ggataaagacctattaacc 416  Q
    |||||| |||||||||||||||||||| || ||||||||||||||||    
T  36992993 aaaaaccggaaatgacctatattacagagggtaaagacctattaacc 36993039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 6897108 - 6897141
Alignment:
Q  367 gggaaaaaactggaaatgacctatattacaggga 400  Q
    |||| |||||||||||||||||||||||||||||    
T  6897108 gggataaaactggaaatgacctatattacaggga 6897141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 9512526 - 9512489
Alignment:
Q  74 atatataataaacctaattgactctaacttactaatat 111  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  9512526 atatataataaacctaatggactctaatttactaatat 9512489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 20076864 - 20076936
Alignment:
Q  347 taaataaataaaaaattacagggaa-aaaactggaaatgacctatattacag--ggataaagacctattaacc 416  Q
    |||||||| ||||| ||||||||   ||||| ||||||||||||||||||||  || ||||||||||||||||    
T  20076864 taaataaaaaaaaagttacagggtgtaaaaccggaaatgacctatattacagaagggtaaagacctattaacc 20076936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 24329523 - 24329572
Alignment:
Q  367 gggaaaaaactggaaatgacctatattac-agggataaagacctattaac 415  Q
    |||||||||| ||||| |||||||||||| |||| |||||||||||||||    
T  24329523 gggaaaaaaccggaaacgacctatattacaaggggtaaagacctattaac 24329572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 418
Target Start/End: Complemental strand, 33658917 - 33658869
Alignment:
Q  372 aaaactggaaatgacctatattaca--gggataaagacctattaacctt 418  Q
    ||||| |||||||||||||||||||  ||| ||||||||||||||||||    
T  33658917 aaaaccggaaatgacctatattacaggggggtaaagacctattaacctt 33658869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 711468 - 711515
Alignment:
Q  371 aaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    |||||||| |||||||||||||||||  ||| ||||||||||||||||    
T  711468 aaaaactgaaaatgacctatattacaggggggtaaagacctattaacc 711515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 399
Target Start/End: Complemental strand, 32637512 - 32637484
Alignment:
Q  371 aaaaactggaaatgacctatattacaggg 399  Q
    |||||||||||||||||||||||||||||    
T  32637512 aaaaactggaaatgacctatattacaggg 32637484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 418
Target Start/End: Complemental strand, 3807 - 3768
Alignment:
Q  379 gaaatgacctatattacagggataaagacctattaacctt 418  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  3807 gaaatgacctatattacaggggtaaagacctattaacctt 3768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 3703 - 3648
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||||||| |||||||||||||||||||||||||| ||||||||  ||||||||||    
T  3703 ttacaggggaaaaactggaaatgacctatattacaggggataaatgcctattaacc 3648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 34827 - 34882
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  34827 ttacagggggaaaactggaaatgacctatattacagggggtaaagacctattaacc 34882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 34626 - 34570
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattac--agggataaagacctattaacc 416  Q
    ||||||||  ||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  34626 ttacagggggaaaaccggaaatgacctatattacaaaggggtaaagacctattaacc 34570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 406297 - 406356
Alignment:
Q  93 gactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||||| |||||||||||||| |||| ||||| || ||||| |||||||||||||    
T  406297 gactctaacttgctaatataaaggcccaataacttaaacctaatactttattatctaaca 406356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 416
Target Start/End: Original strand, 6952884 - 6952958
Alignment:
Q  342 ggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||||||||||| |||||||||||| |  | || |||||||||| ||||||||| ||||||||||||||||||||    
T  6952884 ggggataaataaa-aaaaaattacagagggataattggaaatgacatatattacaggggataaagacctattaacc 6952958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 38500533 - 38500571
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacctt 418  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  38500533 aaatgacctatattacaggggtaaagacctattaacctt 38500571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 40652672 - 40652709
Alignment:
Q  379 gaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  40652672 gaaatgacctatattacaggggtaaagacctattaacc 40652709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 43400733 - 43400672
Alignment:
Q  356 aaaaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| |||||||||||||||  |||||||| ||||||||| ||| ||||||||||||||||    
T  43400733 aaaaatttacagggaaaaaaccagaaatgacatatattacagggggtaaagacctattaacc 43400672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 43945403 - 43945440
Alignment:
Q  379 gaaatgacctatattacagggataaagacctattaacc 416  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  43945403 gaaatgacctatattacaggggtaaagacctattaacc 43945440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 4105299 - 4105335
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaacc 416  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4105299 aaatgacctatattacaggggtaaagacctattaacc 4105335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 24582072 - 24582011
Alignment:
Q  341 aggggataaataaataaaaaattacag-ggaaaaaactggaaatgacctatattacagggataa 403  Q
    ||||||||||||||  ||||||||||| || |||||||| |||| |||||||||||||||||||    
T  24582072 aggggataaataaa--aaaaattacagagggaaaaactgaaaataacctatattacagggataa 24582011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 2696521 - 2696454
Alignment:
Q  352 aaataaaaaatt-acagggaaaaaactggaaatgacctatattac-agggataaagacctattaacct 417  Q
    |||||||||||| | |||||||||||  ||||||| ||||||||| |||| |||||||||||||||||    
T  2696521 aaataaaaaatttatagggaaaaaaccagaaatgatctatattacaaggggtaaagacctattaacct 2696454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 415
Target Start/End: Complemental strand, 34374290 - 34374231
Alignment:
Q  356 aaaaaattacagggaaaaaactggaaatgacctatattacagggataaagacctattaac 415  Q
    ||||||||||| ||||||||    || ||||||||||||||||| |||||||||||||||    
T  34374290 aaaaaattacatggaaaaaatcaaaattgacctatattacaggggtaaagacctattaac 34374231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 26447602 - 26447636
Alignment:
Q  380 aaatgacctatattacagggataaagacctattaa 414  Q
    |||||||||||||||||||| ||||||||||||||    
T  26447602 aaatgacctatattacaggggtaaagacctattaa 26447636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 42406279 - 42406221
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaaccttg 419  Q
    ||||||||  ||||| |||||| |||||||||||| ||||||||||||| |||||||||    
T  42406279 ttacaggggtaaaaccggaaataacctatattacaggggataaagacctgttaaccttg 42406221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 960508 - 960553
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  960508 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 960553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 24971020 - 24970964
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    ||||||||| ||||| ||||||||| |||||||||  ||| ||||||||||||||||    
T  24971020 ttacagggagaaaaccggaaatgacttatattacaggggggtaaagacctattaacc 24970964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 24971178 - 24971234
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    |||||||| |||||| |||||||| ||||||||||  ||| ||||||||||||||||    
T  24971178 ttacaggggaaaaaccggaaatgatctatattacaggggggtaaagacctattaacc 24971234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 25277717 - 25277762
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  25277717 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 25277762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 27198182 - 27198145
Alignment:
Q  380 aaatgacctatattacaggg-ataaagacctattaacc 416  Q
    |||||||||||||||||||| |||||||||||||||||    
T  27198182 aaatgacctatattacaggggataaagacctattaacc 27198145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 27543621 - 27543681
Alignment:
Q  356 aaaaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||| ||| | ||||||||||||||||||| ||| ||||||||||||||||    
T  27543621 aaaaatttacagggagaaacc-ggaaatgacctatattacagggggtaaagacctattaacc 27543681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 29309611 - 29309566
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  29309611 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 29309566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 415
Target Start/End: Complemental strand, 35077784 - 35077717
Alignment:
Q  347 taaataaataaaaaattacagggaaaaaactggaaatgacctatattacagggataaagacctattaac 415  Q
    |||||||| ||||||||| ||||  ||||| | ||||||||||||||||  || |||||||||||||||    
T  35077784 taaataaa-aaaaaattatagggggaaaaccgaaaatgacctatattactagggtaaagacctattaac 35077717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 43615537 - 43615457
Alignment:
Q  74 atatataataaac-ctaattgactctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    ||||||||||||  ||||| |||||||||||||||||||||| ||  |||| || |||  |||||  ||||||||||||||    
T  43615537 atatataataaaatctaatggactctaacttactaatataaaagctcaataactaaagttcaatattttattatctaacat 43615457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 14596 - 14638
Alignment:
Q  110 ataaaggcctaatagcttaagcccaatacattattatctaaca 152  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  14596 ataaaggcccaatagcttaagcccaatactttattatctaaca 14638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 1878 - 1828
Alignment:
Q  367 gggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  1878 gggagaaaactggaaatgacctatattacagggggtaaagacctattaacc 1828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 331 - 388
Alignment:
Q  359 aaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaac 415  Q
    |||||| |||| ||||||| |||||||||||||||||| ||| |||||||||||||||    
T  331 aaattataggggaaaaactagaaatgacctatattacatggggtaaagacctattaac 388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 91112 - 91051
Alignment:
Q  356 aaaaaattacagggaaaaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||  |||||| |||||||||||||||||| ||| ||||||||||||||||    
T  91112 aaaaatttacagggggaaaactagaaatgacctatattacagggggtaaagacctattaacc 91051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 38689 - 38633
Alignment:
Q  341 aggggataaataaataaaaaattacagggaaaaaactggaaatgacctatattacag 397  Q
    ||||| |||||||| ||||||||||| ||  ||||| ||||||||||||||||||||    
T  38689 agggggtaaataaaaaaaaaattacatggggaaaaccggaaatgacctatattacag 38633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 14306 - 14365
Alignment:
Q  94 actctaacttactaatataaaggcctaatagcttaagcccaatacattattatctaacat 153  Q
    |||||||||||||||||||||||||  |||  ||||||||||||  ||||||| ||||||    
T  14306 actctaacttactaatataaaggccccataatttaagcccaatattttattatttaacat 14365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 3971 - 3915
Alignment:
Q  362 ttacagggaaaaaactggaaatgacctatattaca--gggataaagacctattaacc 416  Q
    ||||||||  ||||| |||||||||||||||||||  ||| ||||||||||||||||    
T  3971 ttacagggggaaaaccggaaatgacctatattacaggggggtaaagacctattaacc 3915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 4162 - 4207
Alignment:
Q  372 aaaactggaaatgacctatattaca-gggataaagacctattaacc 416  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  4162 aaaaccggaaatgacctatattacagggggtaaagacctattaacc 4207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 4287 - 4250
Alignment:
Q  380 aaatgacctatattacaggga-taaagacctattaacc 416  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  4287 aaatgacctatattacagggagtaaagacctattaacc 4250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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