View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17971_low_7 (Length: 528)

Name: NF17971_low_7
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17971_low_7
NF17971_low_7
[»] chr1 (7 HSPs)
chr1 (43-528)||(10580013-10580494)
chr1 (381-435)||(37087228-37087282)
chr1 (379-504)||(34663254-34663379)
chr1 (380-504)||(43197638-43197762)
chr1 (409-480)||(28430714-28430785)
chr1 (50-94)||(748750-748794)
chr1 (17-45)||(26851783-26851811)
[»] chr5 (4 HSPs)
chr5 (379-504)||(6827329-6827454)
chr5 (384-436)||(16420475-16420527)
chr5 (406-447)||(16196999-16197040)
chr5 (117-189)||(16196728-16196800)
[»] chr7 (3 HSPs)
chr7 (379-497)||(19566065-19566183)
chr7 (374-500)||(41443764-41443890)
chr7 (370-424)||(45920567-45920619)
[»] chr4 (10 HSPs)
chr4 (299-499)||(23495222-23495421)
chr4 (409-500)||(42110378-42110469)
chr4 (381-496)||(19599101-19599216)
chr4 (379-474)||(55104051-55104146)
chr4 (50-94)||(41622092-41622136)
chr4 (379-434)||(39279608-39279663)
chr4 (369-482)||(38251913-38252027)
chr4 (53-95)||(43616249-43616291)
chr4 (117-182)||(23495538-23495603)
chr4 (385-442)||(54035911-54035968)
[»] chr3 (5 HSPs)
chr3 (348-500)||(41799393-41799545)
chr3 (406-504)||(11268531-11268629)
chr3 (379-436)||(39358584-39358641)
chr3 (348-436)||(30353419-30353507)
chr3 (9-45)||(35738649-35738685)
[»] chr2 (4 HSPs)
chr2 (379-442)||(28635654-28635717)
chr2 (387-500)||(7517855-7517968)
chr2 (50-94)||(5559424-5559468)
chr2 (379-438)||(13263749-13263808)
[»] chr6 (2 HSPs)
chr6 (408-500)||(33871574-33871666)
chr6 (50-94)||(16121066-16121110)
[»] chr8 (4 HSPs)
chr8 (369-503)||(8121150-8121284)
chr8 (409-442)||(37509336-37509369)
chr8 (9-41)||(9372205-9372237)
chr8 (384-436)||(9744431-9744483)


Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 43 - 528
Target Start/End: Original strand, 10580013 - 10580494
Alignment:
Q  43 gaatatgatctaaaaaattgatgtttacttataatagtgatcggatggagtaataagaaactttgaatagtaaaatgtgattgttgataatagcattgag 142  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| ||||||    
T  10580013 gaatatgatctaaaaaattgatgtttacttat--tagtgatcggacggagtaataagaaactttgaaaagtaaaatgtgattgttgatgatagtattgag 10580110  T
Q  143 tatcatatacatgttattcaggttgaaattaatgaaaatttgactcaaaattttaaatcaatcatacaataaagatgcttccaatgcacatattgaaaca 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10580111 tatcatatacatgttattcaggttgaaattaatgaaaatttgactcaaaattttaaatcaatcatacaataaagatgcttccaatgcacatattgaaaca 10580210  T
Q  243 ctttatgaccaaggtaaaattggtgagagtagatgatgatgatttagatttagcaaacactttctttttgagatggacatcaagaggaagtaacaacata 342  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||||||||    
T  10580211 ctttatgaccaaggtaaaattggtgagagtag-tgatgatgatttagatttagtaaacactttctttt-gagatggacattaggaggaagtaacaacata 10580308  T
Q  343 tttacttcctttgggaggtagcttcgtagtagtgagagactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtt 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||    
T  10580309 tttacttcctttgggaggtagcttcgtagtagtgagagactctaacttgtcaaacttctgttcaaatgttattcatgatatgcaagttttaggacttgtt 10580408  T
Q  443 tctatggtagcacaacaaactgtgaattttctaagcgatttgtgggctaacatggctcagaaagcagagaacattgatttgactga 528  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10580409 tctatggtagcacaacaaactgtgaattttctaagtgatttgtgggctaacatggctcagaaagcagagaacattgatttgactga 10580494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 37087282 - 37087228
Alignment:
Q  381 actctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagg 435  Q
    |||||||||||||||||||| || ||||||||||||||||||| |||||||||||    
T  37087282 actctaacttgtcaaattttagtgcaaatgttattcatgatatgcaagttttagg 37087228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 504
Target Start/End: Complemental strand, 34663379 - 34663254
Alignment:
Q  379 agactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagc 478  Q
    |||||||||||| ||| | ||| ||  ||||||||||||||| || |||||||||| ||||||| |||  || || |||||||   || ||||||| |||    
T  34663379 agactctaacttatcacactttagtgaaaatgttattcatgaaatgcaagttttagagcttgttcctactgtggcccaacaaaaaatggattttctgagc 34663280  T
Q  479 gatttgtgggctaacatggctcagaa 504  Q
    ||||| ||||||||||||| ||||||    
T  34663279 gatttttgggctaacatgggtcagaa 34663254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 504
Target Start/End: Original strand, 43197638 - 43197762
Alignment:
Q  380 gactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagcg 479  Q
    ||||||||||||||| ||||| ||  |||| |||||||||| || |||||||||||||| ||| |||  || ||  |||||||| || ||||||| || |    
T  43197638 gactctaacttgtcacattttagtgaaaattttattcatgacatgcaagttttagggctggttcctactgtggcttaacaaactatggattttctgagtg 43197737  T
Q  480 atttgtgggctaacatggctcagaa 504  Q
    |||  ||||||||||||| ||||||    
T  43197738 attcatgggctaacatgggtcagaa 43197762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 28430714 - 28430785
Alignment:
Q  409 tgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagcga 480  Q
    |||||||||||| || ||||||| |||  ||||| ||| || ||| |||||||| |||||||||||||||||    
T  28430714 tgttattcatgacatgcaagtttaaggaattgttcctacggaagcccaacaaacggtgaattttctaagcga 28430785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 748750 - 748794
Alignment:
Q  50 atctaaaaaattgatgtttacttataatagtgatcggatggagta 94  Q
    ||||||||||||| | ||| |||||||||||||||||||| ||||    
T  748750 atctaaaaaattgttttttgcttataatagtgatcggatgaagta 748794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 26851783 - 26851811
Alignment:
Q  17 aaattacattcgaacacccaaacatggaa 45  Q
    |||||||||||||||||||||||||||||    
T  26851783 aaattacattcgaacacccaaacatggaa 26851811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 504
Target Start/End: Original strand, 6827329 - 6827454
Alignment:
Q  379 agactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagc 478  Q
    |||||||||||||||||| ||| ||  ||||||||||||||| || ||||||||||| |||||| |||  || || ||||||||| || ||||| | |||    
T  6827329 agactctaacttgtcaaactttagtgaaaatgttattcatgacatgcaagttttaggacttgttcctactgtggcccaacaaactatggattttttgagc 6827428  T
Q  479 gatttgtgggctaacatggctcagaa 504  Q
    ||||  ||||||||||||| ||||||    
T  6827429 gattcatgggctaacatgggtcagaa 6827454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 16420475 - 16420527
Alignment:
Q  384 ctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttaggg 436  Q
    |||||||||||||||||  | ||||||||||||||||||| ||||||||||||    
T  16420475 ctaacttgtcaaattttaatgcaaatgttattcatgatatgcaagttttaggg 16420527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 16196999 - 16197040
Alignment:
Q  406 aaatgttattcatgatatacaagttttagggcttgtttctat 447  Q
    |||||||||||||||||| ||||||||| |||||||| ||||    
T  16196999 aaatgttattcatgatatgcaagttttaaggcttgttcctat 16197040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 16196728 - 16196800
Alignment:
Q  117 atgtgattgttgataatagcattgagtatcatatacatgttattcaggttgaaattaatgaaaatttgactca 189  Q
    ||||||||| ||||||||| | | |||||   |||||||||||| ||| ||||||||||| ||||||| ||||    
T  16196728 atgtgattgctgataatagtagtaagtatacaatacatgttatttaggctgaaattaatggaaatttggctca 16196800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 497
Target Start/End: Complemental strand, 19566183 - 19566065
Alignment:
Q  379 agactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagc 478  Q
    |||||||||||||||| | ||| ||  ||||||||||||||| || |||||||||||||| ||| |||  || || ||||||||| || ||||||| ||     
T  19566183 agactctaacttgtcacactttagtgaaaatgttattcatgacatgcaagttttagggctggttcctactgtggctcaacaaactatggattttctgagt 19566084  T
Q  479 gatttgtgggctaacatgg 497  Q
    ||||  |||||||||||||    
T  19566083 gattcatgggctaacatgg 19566065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 374 - 500
Target Start/End: Original strand, 41443764 - 41443890
Alignment:
Q  374 gtgagagactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttc 473  Q
    ||||||||||||||||| | ||||||  || |||||||||||  |||| | ||| ||||  |||||||| |||  ||| |||| |||| | |  ||||||    
T  41443764 gtgagagactctaacttattaaatttcagtgcaaatgttatttgtgatttgcaaatttttaggcttgttcctaccgtaacacatcaaattatagattttc 41443863  T
Q  474 taagcgatttgtgggctaacatggctc 500  Q
    |||| ||||||||||||||||||||||    
T  41443864 taagtgatttgtgggctaacatggctc 41443890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 45920619 - 45920567
Alignment:
Q  370 agtagtgagagactctaacttgtcaaatttttgttcaaatgttattcatgatata 424  Q
    ||||||||||||||||||||||||||| || ||  |||||||||||| |||||||    
T  45920619 agtagtgagagactctaacttgtcaaacttctg--caaatgttattcttgatata 45920567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 499
Target Start/End: Complemental strand, 23495421 - 23495222
Alignment:
Q  299 acactttctttttgagatggacatcaagaggaagtaacaacatatttacttcctttgggaggtagcttcgtagtagtgagagactctaacttgtcaaatt 398  Q
    |||||||||||  ||||||  ||||||||| |||||| |||||||| ||||| ||||||| |||||||  || | ||||  |||||||  ||||| || |    
T  23495421 acactttctttc-gagatgagcatcaagagaaagtaataacatattcacttcatttgggaagtagctttataatggtgatggactctactttgtcgaact 23495323  T
Q  399 tttgttcaaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagcgatttgtgggctaacatggc 498  Q
    |  || |||| |||||||||||||| ||||||||||  |||||| |||   |  || ||||| || || ||||||| || |||||||||||||| |||||    
T  23495322 tcagtacaaaagttattcatgatatgcaagttttagtacttgttcctaccatgacataacaagctatggattttctgagtgatttgtgggctaatatggc 23495223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 500
Target Start/End: Complemental strand, 42110469 - 42110378
Alignment:
Q  409 tgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagcgatttgtgggctaacatggctc 500  Q
    |||||||||||| || |||||||||||  ||||| |||||   || |||||||| ||||||||||||||||| |  ||||||||||||||||    
T  42110469 tgttattcatgacatgcaagttttaggaattgttcctatgaaggcccaacaaacggtgaattttctaagcgaatcatgggctaacatggctc 42110378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 496
Target Start/End: Complemental strand, 19599216 - 19599101
Alignment:
Q  381 actctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagcga 480  Q
    |||||||||||||| | ||| ||  ||||||||||||| | || |||||||||||||| ||| |||  || || ||||||||| || ||||||| || ||    
T  19599216 actctaacttgtcacactttagtgaaaatgttattcataacatgcaagttttagggctggttcctactgtggctcaacaaactatggattttctgagtga 19599117  T
Q  481 tttgtgggctaacatg 496  Q
    ||  ||||||||||||    
T  19599116 ttcatgggctaacatg 19599101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 474
Target Start/End: Complemental strand, 55104146 - 55104051
Alignment:
Q  379 agactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttct 474  Q
    |||||||||||||||| | ||| ||  ||||||||||||||| || |||||||||||||| ||| |||  || || ||||||||| || |||||||    
T  55104146 agactctaacttgtcacactttagtgaaaatgttattcatgacatgcaagttttagggctggttcctactgtggctcaacaaactatggattttct 55104051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 41622136 - 41622092
Alignment:
Q  50 atctaaaaaattgatgtttacttataatagtgatcggatggagta 94  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||    
T  41622136 atctaaaaaatagatttttacttataatagtaatcggatggagta 41622092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 39279663 - 39279608
Alignment:
Q  379 agactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttag 434  Q
    |||||||||||||||||| ||| || ||||| |||||||||| || ||||||||||    
T  39279663 agactctaacttgtcaaactttagtgcaaatattattcatgacatgcaagttttag 39279608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 482
Target Start/End: Original strand, 38251913 - 38252027
Alignment:
Q  369 tagtagtgagagactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagtttt-agggcttgtttctatggtagcacaacaaactgtga 467  Q
    |||| |||| |||||||||||||||||| ||| || | ||||| |||||||| || |||||||| ||||||| || |||  ||| | |||||| || ||     
T  38251913 tagttgtgacagactctaacttgtcaaactttagtgctaatgtaattcatgaaatgcaagttttaagggcttattcctaccgtaacccaacaagctatgg 38252012  T
Q  468 attttctaagcgatt 482  Q
    |||||||||| ||||    
T  38252013 attttctaagtgatt 38252027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 43616249 - 43616291
Alignment:
Q  53 taaaaaattgatgtttacttataatagtgatcggatggagtaa 95  Q
    |||||||||||| ||| |||||||||||||| |||||||||||    
T  43616249 taaaaaattgatttttgcttataatagtgattggatggagtaa 43616291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 23495603 - 23495538
Alignment:
Q  117 atgtgattgttgataatagcattgagtatcatatacatgttattcaggttgaaattaatgaaaatt 182  Q
    ||||||||| |||||||||||||||||||  |||| |  ||||||||  ||||||||||| |||||    
T  23495603 atgtgattgctgataatagcattgagtatgctatatagattattcagactgaaattaatggaaatt 23495538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 54035968 - 54035911
Alignment:
Q  385 taacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtt 442  Q
    |||||||||||| ||| || | ||||||||||||||||| |||||||| || ||||||    
T  54035968 taacttgtcaaactttagtgctaatgttattcatgatatgcaagttttgggacttgtt 54035911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 500
Target Start/End: Complemental strand, 41799545 - 41799393
Alignment:
Q  348 ttcctttgggaggtagcttcgtagtagtgagagactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtttctat 447  Q
    ||||||||||||||| || | | || |||| | ||||  |||||||||| ||  || ||  |||||||||||| || |||||||||||  ||||| |||     
T  41799545 ttcctttgggaggtaactccattgtggtgacaaactcagacttgtcaaacttcagtgcatctgttattcatgacatgcaagttttaggagttgttcctac 41799446  T
Q  448 ggtagcacaacaaactgtgaattttctaagcgatttgtgggctaacatggctc 500  Q
    ||  || |||||||| ||||||||||||||||| |  ||||||||||||||||    
T  41799445 ggaggcccaacaaacggtgaattttctaagcgaatcatgggctaacatggctc 41799393  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 504
Target Start/End: Original strand, 11268531 - 11268629
Alignment:
Q  406 aaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagcgatttgtgggctaacatggctcagaa 504  Q
    ||||||||||||||| || |||||||||||||| ||| |||  || || ||||||||| || ||||||| || || |  ||||||||||||| ||||||    
T  11268531 aaatgttattcatgacatgcaagttttagggctagttcctactgtggctcaacaaactatggattttctgagtgactcatgggctaacatgggtcagaa 11268629  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 436
Target Start/End: Original strand, 39358584 - 39358641
Alignment:
Q  379 agactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttaggg 436  Q
    |||||||||||||||||||||   | ||||||||||||| ||||| ||||||||||||    
T  39358584 agactctaacttgtcaaatttcaatgcaaatgttattcacgatatgcaagttttaggg 39358641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 436
Target Start/End: Complemental strand, 30353507 - 30353419
Alignment:
Q  348 ttcctttgggaggtagcttcgtagtagtgagagactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttaggg 436  Q
    ||||||||||||||| || | | || |||| | |||| ||||||||||| ||| || || ||||||||||||| || ||||||||||||    
T  30353507 ttcctttgggaggtaactccattgtggtgaaaaactcaaacttgtcaaactttagtgcatatgttattcatgacatgcaagttttaggg 30353419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 35738649 - 35738685
Alignment:
Q  9 agaaaataaaattacattcgaacacccaaacatggaa 45  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35738649 agaaaataaaattacattcgaacaccaaaacatggaa 35738685  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 28635654 - 28635717
Alignment:
Q  379 agactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtt 442  Q
    ||||||||| |||||||| ||| || ||||||||||||||||||| ||||||||||| ||||||    
T  28635654 agactctaatttgtcaaactttagtgcaaatgttattcatgatatgcaagttttaggacttgtt 28635717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 500
Target Start/End: Complemental strand, 7517968 - 7517855
Alignment:
Q  387 acttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagcgatttgtg 486  Q
    |||||||||| ||| || || ||||||||||||| || |||||||||||| ||| | |||  |  || ||||||||  ||||||||||||| || || ||    
T  7517968 acttgtcaaactttagtgcatatgttattcatgacatgcaagttttagggattgatcctacagaggcccaacaaacaatgaattttctaagtgaattctg 7517869  T
Q  487 ggctaacatggctc 500  Q
    ||||||||||||||    
T  7517868 ggctaacatggctc 7517855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 5559468 - 5559424
Alignment:
Q  50 atctaaaaaattgatgtttacttataatagtgatcggatggagta 94  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||    
T  5559468 atctaaaaaattgatttttacttataacagtgatcggagggagta 5559424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 438
Target Start/End: Complemental strand, 13263808 - 13263749
Alignment:
Q  379 agactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggct 438  Q
    ||||||||||||||| || ||| |||||| ||| ||||| ||||| ||||||||||||||    
T  13263808 agactctaacttgtcgaactttagttcaattgtaattcacgatatgcaagttttagggct 13263749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 500
Target Start/End: Original strand, 33871574 - 33871666
Alignment:
Q  408 atgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaattttctaagcgatttgtgggctaacatggctc 500  Q
    ||||||||||||| || |||||||||||  ||||| ||| ||  || |||||||  ||||||||||||||||| |  ||||||||||||||||    
T  33871574 atgttattcatgacatgcaagttttaggaattgttcctacggaggcccaacaaatggtgaattttctaagcgaatcatgggctaacatggctc 33871666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 16121066 - 16121110
Alignment:
Q  50 atctaaaaaattgatgtttacttataatagtgatcggatggagta 94  Q
    ||||||||| ||||| ||| |||||||||||||||||| ||||||    
T  16121066 atctaaaaagttgatttttgcttataatagtgatcggagggagta 16121110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 503
Target Start/End: Complemental strand, 8121284 - 8121150
Alignment:
Q  369 tagtagtgagagactctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttagggcttgtttctatggtagcacaacaaactgtgaa 468  Q
    |||| |||| |||||||||  ||||||| ||| ||  ||||||||||||||| ||| ||||||||||||||| | |||  || ||  |||||||  || |    
T  8121284 tagtggtgacagactctaatatgtcaaactttagtgaaaatgttattcatgacataaaagttttagggcttgctcctactgtggccaaacaaaccatgga 8121185  T
Q  469 ttttctaagcgatttgtgggctaacatggctcaga 503  Q
    |||||| |||||||  ||| ||||||||| |||||    
T  8121184 ttttctgagcgattcatggactaacatgggtcaga 8121150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 442
Target Start/End: Complemental strand, 37509369 - 37509336
Alignment:
Q  409 tgttattcatgatatacaagttttagggcttgtt 442  Q
    |||||||||||| |||||||||||||||||||||    
T  37509369 tgttattcatgacatacaagttttagggcttgtt 37509336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 9372205 - 9372237
Alignment:
Q  9 agaaaataaaattacattcgaacacccaaacat 41  Q
    |||||||||||||||||||| ||||||||||||    
T  9372205 agaaaataaaattacattcgcacacccaaacat 9372237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 436
Target Start/End: Complemental strand, 9744483 - 9744431
Alignment:
Q  384 ctaacttgtcaaatttttgttcaaatgttattcatgatatacaagttttaggg 436  Q
    ||||||| |||||||||  | ||||||||||||||||||| |||| |||||||    
T  9744483 ctaacttatcaaattttaatgcaaatgttattcatgatatgcaagatttaggg 9744431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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