View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17971_low_9 (Length: 521)

Name: NF17971_low_9
Description: NF17971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17971_low_9
NF17971_low_9
[»] chr6 (4 HSPs)
chr6 (120-507)||(24807016-24807403)
chr6 (361-457)||(34446592-34446689)
chr6 (361-410)||(10339055-10339104)
chr6 (425-457)||(12086345-12086377)
[»] chr7 (4 HSPs)
chr7 (361-457)||(7133213-7133310)
chr7 (375-457)||(5938499-5938582)
chr7 (386-457)||(23930246-23930318)
chr7 (360-408)||(32287403-32287451)
[»] chr4 (5 HSPs)
chr4 (361-457)||(24343534-24343631)
chr4 (361-454)||(944603-944697)
chr4 (361-435)||(11931335-11931409)
chr4 (361-454)||(53381531-53381625)
chr4 (361-456)||(3144588-3144683)
[»] chr3 (2 HSPs)
chr3 (361-457)||(21211315-21211412)
chr3 (361-457)||(25074816-25074913)
[»] chr1 (2 HSPs)
chr1 (361-457)||(20157285-20157382)
chr1 (398-457)||(42004919-42004979)
[»] scaffold0003 (1 HSPs)
scaffold0003 (361-419)||(236915-236973)
[»] chr2 (4 HSPs)
chr2 (361-419)||(6180791-6180849)
chr2 (424-457)||(11308003-11308036)
chr2 (361-410)||(18840954-18841003)
chr2 (424-456)||(25544509-25544541)
[»] chr5 (1 HSPs)
chr5 (361-410)||(38464314-38464363)


Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 120 - 507
Target Start/End: Complemental strand, 24807403 - 24807016
Alignment:
Q  120 cagataagaaattgggtaaaggaaaagataagattgatgatgaggacgttactttccaacgtatggttgcaaaggttagcgcattgattcaccttctctt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24807403 cagataagaaattgggtaaaggaaaagataagattgatgatgaggacgttactttccaacgtatggttgcaaaggttagcgcattgattcaccttctctt 24807304  T
Q  220 cnnnnnnnnnnnnnatgtacctatctgttactgtagttgaagaaatctttatagttatattgttttaattcttgtatgtttgctcagttttgaacatttt 319  Q
    |             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24807303 ctttttttatttttatgtacctatttgttactgtagttgaagaaatctttatagttatattgttttaattcttgtatgtttgctcagttttgaacatttt 24807204  T
Q  320 tatgtataattgaatgatagaagatatacttacttggtacgtatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| |||||    
T  24807203 tatgtataattgaatgatagaagatatacttacttggtacgtatgaagcactgacactcctcggattaggtgtgccccagcgtcggacatgcattggtgt 24807104  T
Q  420 tgataccgacacgacacctatgattagactgaattatgccgtgttcggtgtccgtgtttctgtccgtgtttcatagcttggtacatat 507  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  24807103 tgatactgacacgacacctatgattagactgaattatgccgtgtccggtgaccgtgtttctgtccgtgcttcatagcttggtacatat 24807016  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 34446689 - 34446592
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgttg-ataccgacacgacacctatgattagactgaattatg 457  Q
    |||||||||| || ||||||  ||||||||||| ||||||||| || | || ||||||||| | |||||||||||||||||||||| |||||||||||    
T  34446689 tatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatg 34446592  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 10339055 - 10339104
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatg 410  Q
    |||||||||| || ||||||| ||||||| ||| ||||||||||||||||    
T  10339055 tatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatg 10339104  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Original strand, 12086345 - 12086377
Alignment:
Q  425 ccgacacgacacctatgattagactgaattatg 457  Q
    ||||||||||||||||||||| |||||||||||    
T  12086345 ccgacacgacacctatgattaaactgaattatg 12086377  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 457
Target Start/End: Original strand, 7133213 - 7133310
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgt-tgataccgacacgacacctatgattagactgaattatg 457  Q
    |||||||||| ||  |||||||||||||||||| |||||||||||||| || |||||||  || ||||||||  |||||||||||| |||||||||||    
T  7133213 tatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatg 7133310  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 375 - 457
Target Start/End: Complemental strand, 5938582 - 5938499
Alignment:
Q  375 actcctcagattaggtgtgccccagtgtcggacatgcatcggtgt-tgataccgacacgacacctatgattagactgaattatg 457  Q
    |||||||||||||||||||  || |||||||||| |||||||||| ||| |||||||| |||||||| |||| |||||||||||    
T  5938582 actcctcagattaggtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctataattatactgaattatg 5938499  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 23930318 - 23930246
Alignment:
Q  386 taggtgtgccccagtgtcggacatgcatcggtgtt-gataccgacacgacacctatgattagactgaattatg 457  Q
    |||||||  ||| |||||||||| |||||||| |  || |||||||| ||||||||||||| |||||||||||    
T  23930318 taggtgtatcccggtgtcggacacgcatcggtatccgacaccgacacaacacctatgattacactgaattatg 23930246  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 32287403 - 32287451
Alignment:
Q  360 gtatgaagcactgatactcctcagattaggtgtgccccagtgtcggaca 408  Q
    ||||||||||| || ||||||| ||||||||||| ||| ||||||||||    
T  32287403 gtatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 32287451  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 24343631 - 24343534
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgttg-ataccgacacgacacctatgattagactgaattatg 457  Q
    |||||||||| || |||||||||| |||| ||| ||| |||||||||| || ||||||| | | ||||||||||||||||| |||| |||||||||||    
T  24343631 tatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatg 24343534  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 454
Target Start/End: Original strand, 944603 - 944697
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgtt-gataccgacacgacacctatgattagactgaatt 454  Q
    |||||||| | || ||||||||||||||||||| ||| |||||||||| || || ||||| || || |||||||||||||| |||| ||| ||||    
T  944603 tatgaagctcagagactcctcagattaggtgtgtcccggtgtcggacacgcgtctgtgttcgacactgacacgacacctataattacactaaatt 944697  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 11931409 - 11931335
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgttgataccgacacgaca 435  Q
    |||||||||| || |||||   ||||||||||| ||  ||||||||||||| ||||||| |||||||||| ||||    
T  11931409 tatgaagcacggacactccatggattaggtgtgtcctggtgtcggacatgcgtcggtgtcgataccgacatgaca 11931335  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 454
Target Start/End: Original strand, 53381531 - 53381625
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgt-tgataccgacacgacacctatgattagactgaatt 454  Q
    |||||||||| || ||||||| ||||||||||| ||| |||||||| | || || ||||  || ||||||||||| ||||| |||| ||||||||    
T  53381531 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacacgacgcctataattacactgaatt 53381625  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 456
Target Start/End: Original strand, 3144588 - 3144683
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgt-tgataccgacacgacacctatgattagactgaattat 456  Q
    |||||||||| || ||| ||| ||||||||||| | | |||| ||||| || | ||||| ||| |||||||||||||||||||||| ||| ||||||    
T  3144588 tatgaagcacggacacttctcggattaggtgtgtctc-gtgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattat 3144683  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 21211412 - 21211315
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgttg-ataccgacacgacacctatgattagactgaattatg 457  Q
    ||||||||||  | ||||||| ||||||| ||| |||||||||||||| || ||||||| | | |||||||||||||| || |||| |||||| ||||    
T  21211412 tatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcggtgtcgaacaccgacacgacacccataattacactgaactatg 21211315  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 25074913 - 25074816
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgt-tgataccgacacgacacctatgattagactgaattatg 457  Q
    ||||||||||  | ||||||| ||||||||||| |||||||||||||| || | |||||  || |||||||| || |||||||||| ||| |||||||    
T  25074913 tatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatg 25074816  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 457
Target Start/End: Original strand, 20157285 - 20157382
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgttgataccgaca-cgacacctatgattagactgaattatg 457  Q
    |||||||||| ||||||||||| |||||||||| | | |||||||||| || ||||||| |    ||||| |||||| |||||||| |||||||||||    
T  20157285 tatgaagcacggatactcctcaaattaggtgtgtctcggtgtcggacacgcgtcggtgtcggacacgacaccgacacatatgattacactgaattatg 20157382  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 457
Target Start/End: Original strand, 42004919 - 42004979
Alignment:
Q  398 agtgtcggacatgcatcggtgtt-gataccgacacgacacctatgattagactgaattatg 457  Q
    |||||||||||||| |||||||  || |||||||| ||||||||||||| ||| |||||||    
T  42004919 agtgtcggacatgcgtcggtgtccgacaccgacacaacacctatgattacactaaattatg 42004979  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 236915 - 236973
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgt 419  Q
    |||||||||| || ||||||||||||||||||| ||| ||||| |||| ||||| ||||    
T  236915 tatgaagcacagacactcctcagattaggtgtgtcccggtgtcagacacgcatccgtgt 236973  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 6180791 - 6180849
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatgcatcggtgt 419  Q
    |||||||||| || ||||||||||||||||||| | |||| |||||||||  |||||||    
T  6180791 tatgaagcacggaaactcctcagattaggtgtgtctcagtatcggacatgagtcggtgt 6180849  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 11308003 - 11308036
Alignment:
Q  424 accgacacgacacctatgattagactgaattatg 457  Q
    |||||||||||||||||||||| |||||||||||    
T  11308003 accgacacgacacctatgattacactgaattatg 11308036  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 18840954 - 18841003
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatg 410  Q
    |||||||||| || ||||||| ||||||||||| ||| ||||||||||||    
T  18840954 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatg 18841003  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 456
Target Start/End: Complemental strand, 25544541 - 25544509
Alignment:
Q  424 accgacacgacacctatgattagactgaattat 456  Q
    |||||||||||||||||||||| ||||||||||    
T  25544541 accgacacgacacctatgattacactgaattat 25544509  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 38464314 - 38464363
Alignment:
Q  361 tatgaagcactgatactcctcagattaggtgtgccccagtgtcggacatg 410  Q
    |||||||||| || ||||||| ||||||||||| ||| ||||||||||||    
T  38464314 tatgaagcacagacactcctcggattaggtgtgtcccggtgtcggacatg 38464363  T

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