View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17972_high_1 (Length: 816)

Name: NF17972_high_1
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17972_high_1
NF17972_high_1
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-563)||(7853-8427)
[»] chr3 (46 HSPs)
chr3 (615-781)||(7619604-7619770)
chr3 (137-558)||(17762069-17762481)
chr3 (137-558)||(19063389-19063801)
chr3 (621-777)||(7664128-7664284)
chr3 (1-459)||(11513707-11514182)
chr3 (195-472)||(27851400-27851678)
chr3 (1-148)||(17761899-17762046)
chr3 (1-148)||(19063219-19063366)
chr3 (1-472)||(15647606-15648092)
chr3 (180-472)||(11078506-11078797)
chr3 (136-472)||(16305127-16305455)
chr3 (359-473)||(12409996-12410110)
chr3 (312-478)||(18459286-18459453)
chr3 (194-270)||(8729018-8729094)
chr3 (194-270)||(9080905-9080981)
chr3 (379-486)||(1464124-1464231)
chr3 (2-101)||(2903019-2903118)
chr3 (299-429)||(13931844-13931975)
chr3 (1-144)||(13932145-13932288)
chr3 (344-558)||(19658156-19658368)
chr3 (1-146)||(19696002-19696148)
chr3 (1-146)||(19705616-19705762)
chr3 (344-533)||(2903353-2903541)
chr3 (1-122)||(15552290-15552411)
chr3 (1-101)||(12409669-12409769)
chr3 (3-468)||(13699227-13699689)
chr3 (213-270)||(315144-315201)
chr3 (194-271)||(19197900-19197977)
chr3 (213-270)||(20418291-20418348)
chr3 (337-472)||(21317258-21317391)
chr3 (213-271)||(13653974-13654032)
chr3 (213-270)||(4243213-4243269)
chr3 (194-270)||(16794305-16794381)
chr3 (1-101)||(19657792-19657891)
chr3 (194-270)||(22766553-22766629)
chr3 (213-316)||(14072704-14072807)
chr3 (405-536)||(17769232-17769362)
chr3 (405-536)||(19070533-19070663)
chr3 (226-270)||(14077405-14077449)
chr3 (194-270)||(21317450-21317526)
chr3 (369-472)||(22766723-22766826)
chr3 (225-268)||(16882350-16882393)
chr3 (344-446)||(314975-315077)
chr3 (212-265)||(15552187-15552240)
chr3 (194-263)||(17697676-17697745)
chr3 (72-127)||(27851775-27851832)
[»] scaffold0388 (2 HSPs)
scaffold0388 (141-563)||(5153-5566)
scaffold0388 (1-125)||(5616-5741)
[»] scaffold0498 (2 HSPs)
scaffold0498 (137-563)||(3224-3649)
scaffold0498 (1-115)||(3071-3186)
[»] chr2 (30 HSPs)
chr2 (163-567)||(19320346-19320751)
chr2 (328-563)||(15670725-15670959)
chr2 (338-558)||(22683145-22683364)
chr2 (11-263)||(22683493-22683760)
chr2 (135-264)||(33705922-33706049)
chr2 (191-446)||(25918530-25918779)
chr2 (1-101)||(33705772-33705872)
chr2 (137-273)||(19643600-19643734)
chr2 (194-270)||(24440701-24440777)
chr2 (1-101)||(19643446-19643546)
chr2 (1-122)||(22524590-22524711)
chr2 (160-368)||(14793932-14794133)
chr2 (1-131)||(25918868-25918999)
chr2 (379-533)||(40202552-40202705)
chr2 (213-270)||(24157888-24157945)
chr2 (198-270)||(21911046-21911118)
chr2 (51-148)||(27940191-27940289)
chr2 (206-260)||(10896411-10896465)
chr2 (216-270)||(22383527-22383581)
chr2 (379-533)||(27939771-27939924)
chr2 (217-270)||(15668545-15668598)
chr2 (194-255)||(24844205-24844266)
chr2 (1-69)||(14792779-14792847)
chr2 (40-127)||(19320199-19320287)
chr2 (198-262)||(20568200-20568264)
chr2 (2-122)||(27640017-27640136)
chr2 (369-472)||(21845999-21846101)
chr2 (194-265)||(21846208-21846279)
chr2 (367-472)||(20567985-20568091)
chr2 (367-472)||(10896581-10896685)
[»] chr1 (24 HSPs)
chr1 (172-472)||(26703411-26703714)
chr1 (194-270)||(23054427-23054503)
chr1 (344-482)||(8698699-8698837)
chr1 (344-558)||(31359091-31359304)
chr1 (4-126)||(2819052-2819174)
chr1 (172-270)||(21683115-21683213)
chr1 (213-269)||(16478691-16478747)
chr1 (1-101)||(25399625-25399725)
chr1 (345-567)||(2819415-2819636)
chr1 (1-102)||(14750876-14750977)
chr1 (198-270)||(26280007-26280079)
chr1 (197-255)||(18517117-18517175)
chr1 (206-260)||(2819282-2819336)
chr1 (213-270)||(9346814-9346869)
chr1 (3-65)||(16478458-16478520)
chr1 (402-472)||(18517316-18517385)
chr1 (380-473)||(10153871-10153964)
chr1 (225-270)||(16870024-16870069)
chr1 (225-270)||(18129994-18130039)
chr1 (501-558)||(23935342-23935399)
chr1 (40-101)||(31359551-31359612)
chr1 (389-473)||(25399221-25399305)
chr1 (386-473)||(22640130-22640217)
chr1 (407-484)||(26280217-26280294)
[»] chr8 (15 HSPs)
chr8 (137-446)||(19505406-19505716)
chr8 (137-563)||(12541396-12541814)
chr8 (1-255)||(1208453-1208709)
chr8 (1-148)||(12541837-12541985)
chr8 (338-472)||(1209918-1210051)
chr8 (194-270)||(18558074-18558150)
chr8 (194-270)||(17916845-17916921)
chr8 (379-486)||(24498323-24498431)
chr8 (379-478)||(17687818-17687917)
chr8 (1-116)||(17689595-17689710)
chr8 (386-539)||(27739658-27739810)
chr8 (60-122)||(24635609-24635671)
chr8 (367-472)||(18557870-18557974)
chr8 (52-101)||(27740110-27740159)
chr8 (380-458)||(24635176-24635254)
[»] chr7 (40 HSPs)
chr7 (134-472)||(16472535-16472880)
chr7 (248-472)||(16412589-16412814)
chr7 (337-481)||(23125781-23125924)
chr7 (137-486)||(25807225-25807566)
chr7 (1-148)||(23126128-23126275)
chr7 (2-118)||(1878035-1878151)
chr7 (1-127)||(14114293-14114419)
chr7 (1-127)||(14423943-14424069)
chr7 (1-127)||(11572068-11572194)
chr7 (217-472)||(18361629-18361878)
chr7 (345-558)||(11572380-11572592)
chr7 (379-551)||(9802946-9803117)
chr7 (379-551)||(9804842-9805013)
chr7 (200-265)||(13172382-13172447)
chr7 (194-270)||(5035432-5035508)
chr7 (379-551)||(9762454-9762625)
chr7 (135-270)||(16104959-16105094)
chr7 (3-122)||(4549905-4550024)
chr7 (352-563)||(15871271-15871481)
chr7 (213-270)||(16307771-16307828)
chr7 (378-458)||(10254541-10254621)
chr7 (213-270)||(9064218-9064275)
chr7 (29-116)||(3778358-3778446)
chr7 (404-484)||(11015796-11015876)
chr7 (136-264)||(11572221-11572347)
chr7 (1-148)||(12222245-12222393)
chr7 (213-260)||(16412061-16412108)
chr7 (379-473)||(3779052-3779146)
chr7 (29-123)||(16422775-16422868)
chr7 (213-270)||(7487948-7488005)
chr7 (199-264)||(14114101-14114166)
chr7 (199-264)||(14423751-14423816)
chr7 (195-264)||(15871121-15871190)
chr7 (1-57)||(18361412-18361468)
chr7 (386-473)||(1878465-1878552)
chr7 (51-118)||(9396739-9396806)
chr7 (1-68)||(9762968-9763035)
chr7 (370-472)||(13172555-13172658)
chr7 (198-264)||(2501095-2501161)
chr7 (1-118)||(15870892-15871009)
[»] chr5 (23 HSPs)
chr5 (7-485)||(20237192-20237675)
chr5 (160-458)||(27276118-27276419)
chr5 (195-478)||(17262742-17263020)
chr5 (337-529)||(34637356-34637547)
chr5 (337-473)||(22586146-22586283)
chr5 (352-446)||(26055697-26055791)
chr5 (213-270)||(23589770-23589827)
chr5 (213-270)||(26119852-26119909)
chr5 (194-270)||(27057372-27057448)
chr5 (194-270)||(39798890-39798966)
chr5 (405-483)||(24021559-24021638)
chr5 (1-112)||(26118403-26118514)
chr5 (191-265)||(34637578-34637652)
chr5 (192-270)||(34638505-34638583)
chr5 (379-473)||(26118811-26118905)
chr5 (194-267)||(20567863-20567936)
chr5 (194-271)||(31589021-31589098)
chr5 (30-79)||(34638983-34639032)
chr5 (194-270)||(13692475-13692551)
chr5 (219-270)||(20969254-20969305)
chr5 (3-57)||(18672492-18672546)
chr5 (196-270)||(22586011-22586085)
chr5 (370-472)||(39799059-39799160)
[»] scaffold0758 (2 HSPs)
scaffold0758 (137-472)||(4127-4463)
scaffold0758 (1-101)||(4534-4635)
[»] chr4 (16 HSPs)
chr4 (193-456)||(17812275-17812532)
chr4 (191-472)||(18394386-18394668)
chr4 (353-458)||(17526530-17526635)
chr4 (29-160)||(17526231-17526362)
chr4 (379-555)||(23087453-23087628)
chr4 (194-270)||(13027833-13027909)
chr4 (347-558)||(18473791-18474001)
chr4 (198-270)||(20570985-20571057)
chr4 (152-481)||(20577127-20577457)
chr4 (379-558)||(24619411-24619589)
chr4 (214-270)||(2651853-2651909)
chr4 (194-270)||(14357113-14357189)
chr4 (379-458)||(10328550-10328629)
chr4 (1-101)||(17812122-17812222)
chr4 (219-270)||(16324523-16324574)
chr4 (194-270)||(14902441-14902517)
[»] scaffold1107 (2 HSPs)
scaffold1107 (346-481)||(2447-2582)
scaffold1107 (199-303)||(2339-2444)
[»] scaffold0067 (2 HSPs)
scaffold0067 (346-481)||(16507-16642)
scaffold0067 (200-271)||(16400-16471)
[»] scaffold0003 (4 HSPs)
scaffold0003 (248-472)||(1301-1526)
scaffold0003 (193-429)||(416023-416252)
scaffold0003 (213-260)||(773-820)
scaffold0003 (29-123)||(11487-11580)
[»] chr6 (30 HSPs)
chr6 (139-307)||(18026724-18026892)
chr6 (172-473)||(26185567-26185870)
chr6 (1-127)||(20462152-20462278)
chr6 (344-558)||(15477948-15478165)
chr6 (2-148)||(15477595-15477741)
chr6 (194-430)||(31127354-31127591)
chr6 (365-486)||(18026912-18027032)
chr6 (226-532)||(15551782-15552083)
chr6 (194-267)||(24398722-24398795)
chr6 (379-473)||(14758152-14758246)
chr6 (27-147)||(14758522-14758643)
chr6 (225-270)||(24728598-24728643)
chr6 (194-270)||(13145193-13145269)
chr6 (226-270)||(23231243-23231287)
chr6 (194-270)||(32335882-32335958)
chr6 (220-270)||(23006094-23006144)
chr6 (220-270)||(23782222-23782272)
chr6 (1-117)||(31127140-31127258)
chr6 (213-270)||(17445689-17445746)
chr6 (191-255)||(25595957-25596021)
chr6 (226-270)||(30451579-30451623)
chr6 (370-458)||(30451726-30451814)
chr6 (1-123)||(15552190-15552313)
chr6 (370-472)||(16462841-16462944)
chr6 (216-270)||(18172067-18172121)
chr6 (194-260)||(25930546-25930612)
chr6 (197-266)||(16462665-16462734)
chr6 (237-270)||(17867625-17867658)
chr6 (237-270)||(17877408-17877441)
chr6 (237-270)||(24718797-24718830)
[»] scaffold0364 (1 HSPs)
scaffold0364 (216-268)||(10402-10454)
[»] scaffold0043 (1 HSPs)
scaffold0043 (107-472)||(1725-2083)
[»] scaffold0683 (1 HSPs)
scaffold0683 (172-446)||(269-534)
[»] scaffold0074 (1 HSPs)
scaffold0074 (194-270)||(31684-31760)
[»] scaffold0622 (2 HSPs)
scaffold0622 (198-472)||(3381-3655)
scaffold0622 (213-254)||(2736-2777)
[»] scaffold0011 (1 HSPs)
scaffold0011 (213-270)||(59618-59675)
[»] scaffold0772 (2 HSPs)
scaffold0772 (214-270)||(874-930)
scaffold0772 (405-447)||(1068-1110)
[»] scaffold0311 (1 HSPs)
scaffold0311 (194-270)||(20128-20204)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-89)||(105121-105208)
[»] scaffold0522 (2 HSPs)
scaffold0522 (219-270)||(4266-4317)
scaffold0522 (219-270)||(11549-11600)


Alignment Details
Target: scaffold0092 (Bit Score: 155; Significance: 7e-82; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 1 - 563
Target Start/End: Complemental strand, 8427 - 7853
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  ||||||| ||||||||| ||||||||| ||||||||||||||||| |||  ||||||||||| ||| |  || |||||||    
T  8427 ctaaaatttataagtcttaaaacaaggtattggttctgaaagaacaaatgagagcaaaagaatttacaacggaagcttagttgcaagtaagaatctgaag 8328  T
Q  101 aattcagagtctgaagaccatcagaagttgatagt-----------------tagagtctgaagtgaagaacctgaaagtcagttaaattggttatttga 183  Q
       |||||||||||||||||||||||| ||| |||                 |||||||||||||||||||||| ||| | |||||| || |||||||||    
T  8327 tcatcagagtctgaagaccatcagaagctgacagtcagagtatgaagtcacctagagtctgaagtgaagaacctaaaatt-agttaagtttgttatttga 8229  T
Q  184 atacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtca-agaaag 282  Q
    | |||  |||||||||||||| |||    ||| |||||||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  8228 agacacaagtttgcagaaggaatagt---ctgaagcaacgattatttcagaggaattagaaggcattggatgattatccactggagaaggtcatagaaag 8132  T
Q  283 gtcaatactccacttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaag 382  Q
    |  |||| |  | || ||||||||| ||||||||||| ||  |||   ||||| ||||  ||||||||||||||||||| | ||||||||||||||||||    
T  8131 gataatagtataattgtacaaccactactccactactccaacatttcatgcgcatagtgatgctacagctgtgtctctgttggttaattctccatacaag 8032  T
Q  383 gagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtgctga 482  Q
    || || |||| ||||||    |||||| |||||||| | |||||||| |||||| |||||||| || |||||||||||||||||||||||  | || |||    
T  8031 gaatgttttttaaattactatttcctaggacattaacctaatcaagcaacaaattattggtga-tgatcaagcttcagtaacgactctttaatatgttga 7933  T
Q  483 caccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcatagactctacaacatgtaaa 563  Q
    |||| || ||||| | | |||||||||||||| |||  ||||||||||||| || || | | |||||||||||||| ||||    
T  7932 cacctttacaacgtc-tctttcatacctctatataagggaataaagacttgaagattagtagagactctacaacatttaaa 7853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 4e-77; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 615 - 781
Target Start/End: Original strand, 7619604 - 7619770
Alignment:
Q  615 tagagtctataatttatttcagaagttacatcaagtaaaagtgcatatattcacacaaaagtttgaaacacacaagacctgaactaacattacacctgcc 714  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||    
T  7619604 tagagtctataatttatttcagaagttacaacaagtaaaagtgcatatattcacacaaaagtttgaaacacacaaaaactgaactaacattacaccttcc 7619703  T
Q  715 ctcctttgggatctttacacagcagcacacgacaaatcccatttattcacattattataactaagca 781  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7619704 ctcctttgggatctttacacaacagcacacgacaaatcccatttattcacattattataactaagca 7619770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 137 - 558
Target Start/End: Original strand, 17762069 - 17762481
Alignment:
Q  137 agagtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagaga 236  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||  |||||| | ||||| |||||   ||||||||||| |||||  |||     
T  17762069 agagtctgaagtgaagaacctgaa-gtcagttaaattggttatttgaagacacaagtttgtataaggaatagaagcttggagcaacgattattttggagg 17762167  T
Q  237 aattagaaggcattggatgtttatccactgaagaaggtca-agaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgc 335  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||| ||||| |  | || ||||||||| |||||||||        |||| |||||    
T  17762168 aattagaaggcatttgatgtttatccagtgaagaaggtcagagaaaggacaatagtaaaattgtacaaccactactccacta--------ttgtttgcgc 17762259  T
Q  336 ctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaa 435  Q
     |||||||||| ||| ||||||||| || |||||||||| ||||||||| ||  ||||||||||| |||||||| || |||||  ||||||||| ||| |    
T  17762260 atagtactgctgcagttgtgtctctactggttaattctctatacaaggaatgaatttcaaattattccttcctaggatattaacgaaatcaagcaacaga 17762359  T
Q  436 tcattggtgattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgta 535  Q
    ||||||||||||| |||||||| ||||||||||||||| |||| || ||||  | ||||| | | |||||||||||||| | || |||| |||||||| |    
T  17762360 tcattggtgattgatcaagctttagtaacgactctttgatgtgatgccacctctacaacgtc-tctttcatacctctatatgaaggaatgaagacttgaa 17762458  T
Q  536 gttttgcatagactctacaacat 558  Q
    | || | | | ||||||||||||    
T  17762459 gattagtagatactctacaacat 17762481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 137 - 558
Target Start/End: Original strand, 19063389 - 19063801
Alignment:
Q  137 agagtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagaga 236  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||  |||||| | ||||| |||||   ||||||||||| |||||  |||     
T  19063389 agagtctgaagtgaagaacctgaa-gtcagttaaattggttatttgaagacacaagtttgtataaggaatagaagcttggagcaacgattattttggagg 19063487  T
Q  237 aattagaaggcattggatgtttatccactgaagaaggtca-agaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgc 335  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||| ||||| |  | || ||||||||| |||||||||        |||| |||||    
T  19063488 aattagaaggcatttgatgtttatccagtgaagaaggtcagagaaaggacaatagtaaaattgtacaaccactactccacta--------ttgtttgcgc 19063579  T
Q  336 ctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaa 435  Q
     |||||||||| ||| ||||||||| || |||||||||| ||||||||| ||  ||||||||||| |||||||| || |||||  ||||||||| ||| |    
T  19063580 atagtactgctgcagttgtgtctctactggttaattctctatacaaggaatgaatttcaaattattccttcctaggatattaacgaaatcaagcaacaga 19063679  T
Q  436 tcattggtgattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgta 535  Q
    ||||||||||||| |||||||| ||||||||||||||| |||| || ||||  | ||||| | | |||||||||||||| | || |||| |||||||| |    
T  19063680 tcattggtgattgatcaagctttagtaacgactctttgatgtgatgccacctctacaacgtc-tctttcatacctctatatgaaggaatgaagacttgaa 19063778  T
Q  536 gttttgcatagactctacaacat 558  Q
    | || | | | ||||||||||||    
T  19063779 gattagtagatactctacaacat 19063801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 621 - 777
Target Start/End: Complemental strand, 7664284 - 7664128
Alignment:
Q  621 ctataatttatttcagaagttacatcaagtaaaagtgcatatattcacacaaaagtttgaaacacacaagacctgaactaacattacacctgccctcctt 720  Q
    ||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||    
T  7664284 ctatagtttatttcagaagttacaacaagtaaaattgtatatattcacacaaaagtttgaaacacacaagatctgaactaacattacaccttccctcatt 7664185  T
Q  721 tgggatctttacacagcagcacacgacaaatcccatttattcacattattataacta 777  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7664184 tgagatctttacacagcagcacacgacaaatcccatttattcacattattataacta 7664128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 11514182 - 11513707
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  | ||||| |||||||||  ||||||||||||||||||||||||||||||  ||| ||| ||| ||| ||  ||||||| |    
T  11514182 ctaaaatttataagtcttaaagcaaggtattggttctggaagaacaattgagagcaaaagaattttcaaaggaatctttgttgcaagtcaaagtctgagg 11514083  T
Q  101 aattcagagtctgaagaccatcagaagttgatagttagagtctgaag----------------tgaagaacctgaaagtcagttaaattggttatttgaa 184  Q
    |  |||||||||| |||||||||||||||||  ||||||||||||||                ||||||||||||| || ||||  ||||||||||||||    
T  11514082 acatcagagtctggagaccatcagaagttgactgttagagtctgaagccaccagagtctgaagtgaagaacctgaa-gttagttttattggttatttgaa 11513984  T
Q  185 tacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaag-aaagg 283  Q
      ||  ||| || | ||||| || || ||||||| ||||||||||| |||| ||||| ||||||||  ||| |||||||| ||||||||| | | |||||    
T  11513983 ggcacaagtgtgtataaggaatataagactggagtaacgactatttaagaggaattataaggcatttcatgcttatccaccgaagaaggttagggaaagg 11513884  T
Q  284 tcaatactccacttatacaaccaccactccactactacactattgtctgcgcctagtact-gctacagctgtgtctctgctcgttaattctccatacaag 382  Q
     ||||| | || || ||||||||| | ||||||||| |||||||||||| |  ||||||  ||||| | ||||||||| |  ||||||| ||||||||||    
T  11513883 acaatagtacaattgtacaaccactagtccactactccactattgtctgtgtatagtacaagctacggttgtgtctctaccggttaattttccatacaag 11513784  T
Q  383 gagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttca 459  Q
    || || |||||||||||| |||||||| |||||||| |||||||||| ||| |||||||||||||| ||||||||||    
T  11513783 gaatgattttcaaattattccttcctaggacattaaccaaatcaagcaacagatcattggtgattgatcaagcttca 11513707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 195 - 472
Target Start/End: Complemental strand, 27851678 - 27851400
Alignment:
Q  195 tgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaa-ggtca-agaaaggtcaatactc 292  Q
    |||||||||| |||||   ||||||||| |||||||||||||| ||||||| ||||||||| |||||| |||||||| || || ||||||| ||||| |     
T  27851678 tgcagaaggaatagaagcatggagcaacaactatttcagagaagttagaagacattggatgcttatccgctgaagaatggacagagaaaggacaatagta 27851579  T
Q  293 cacttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggtttt 392  Q
    || || ||||||||| |||| |||||| ||||  ||  ||||| ||||||| ||||| || |||||||||| |||||||||||||||||||| ||   ||    
T  27851578 caattgtacaaccactactctactactccactcatgcatgcgcatagtactactacaactatgtctctgctggttaattctccatacaaggaatgaagtt 27851479  T
Q  393 caaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactcttt 472  Q
    |||||||| || |||||  |||||||  ||||||||| |||||||||||||||||  |||||||||| ||| ||||||||    
T  27851478 caaattattccctcctagaacattaacaaaatcaagcaacaaatcattggtgatt-atcaagcttcaataatgactcttt 27851400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 17761899 - 17762046
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  ||||||  ||||||||| |||||||||||||||| |||||||||||||||  ||||||||||  || |||||||||||||    
T  17761899 ctaaaatttataagtcttacaacaagatattggttctgaaagaacaattgagagaaaaagaattttcaaggaaagcttagttgtaagtctgagtctgaag 17761998  T
Q  101 aattcagagtctgaagaccatcagaagttgatagttagagtctgaagt 148  Q
    |||| |||||||||||||||||||||| ||| ||| ||||||||||||    
T  17761999 aattaagagtctgaagaccatcagaagctgaaagtcagagtctgaagt 17762046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 19063219 - 19063366
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  ||||||  ||||||||| |||||||||||||||| |||||||||||||||  ||||||||||  || |||||||||||||    
T  19063219 ctaaaatttataagtcttacaacaagatattggttctgaaagaacaattgagagaaaaagaattttcaaggaaagcttagttgtaagtctgagtctgaag 19063318  T
Q  101 aattcagagtctgaagaccatcagaagttgatagttagagtctgaagt 148  Q
    |||| |||||||||||||||||||||| ||| ||| ||||||||||||    
T  19063319 aattaagagtctgaagaccatcagaagctgaaagtcagagtctgaagt 19063366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 15648092 - 15647606
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||  ||||  ||||||| |||||||||  ||||| |||| |||||||  |||||| |||||||||||| ||| ||| | | |||||||||    
T  15648092 ctaaaatttatacatcttaaaacaaggtattggttctggaagaaaaattaagagcaagcgaatttacaagagaagctttgttgcaagttttagtctgaag 15647993  T
Q  101 aattcagagtctgaagaccatcagaagttgatagttagagtctgaagtga---agaacctgaa-------------agtcagttaaattggttatttgaa 184  Q
    |  |||||||||||||| ||||| ||| |||| || | ||||| |||| |   ||| ||||||             ||| |||||| || ||||||||||    
T  15647992 acatcagagtctgaagagcatcataagctgattgtcaaagtctcaagtcacccagagcctgaagtgaaaaggttgtagttagttaa-ttagttatttgaa 15647894  T
Q  185 tacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaa-gaaagg 283  Q
     |||| ||| || | ||| | || || |||||||||| |||||||| |||| ||||||| ||| ||||||| |||||||||| | |||| ||| ||||||    
T  15647893 gacataagtgtgaa-aagaaataaaagactggagcaatgactatttaagaggaattagatggctttggatgcttatccactggataagggcaaagaaagg 15647795  T
Q  284 tcaatactccacttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaagg 383  Q
     || || | || |||||||||||| ||| ||||||| ||  ||| ||| | | ||||||| ||| || ||||||||| || |||||||||||||| |||     
T  15647794 acagtagtacaattatacaaccactacttcactactccaacattttctacacatagtactactaaagttgtgtctctactagttaattctccataaaaga 15647695  T
Q  384 agtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactcttt 472  Q
    | ||||||| ||||||| ||||| || |||||||| ||||||| || ||| |||||||||||||| ||||| ||||  ||| |||||||    
T  15647694 aatggtttttaaattattccttcttaggacattaaccaaatcatgcaacagatcattggtgattgatcaagtttcaacaacaactcttt 15647606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 180 - 472
Target Start/End: Complemental strand, 11078797 - 11078506
Alignment:
Q  180 ttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaaga 279  Q
    ||||| ||| |||||||| |||||| |||||  |||||||||| ||| ||| |||| ||| |||||||||| |||| ||||||||| ||||  ||  | |    
T  11078797 ttgaagacacgagtttgcggaaggaatagaagcctggagcaactactcttttagaggaatcagaaggcattagatgcttatccacttaagagcgtagaaa 11078698  T
Q  280 aaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatac 379  Q
    |||| ||||| | || || |||| |||| |||| || ||| |||| |||| ||| | |||||||||||||| | |||||  |||  ||||||||||| ||    
T  11078697 aaggacaatagtacaattgtacatccactactctacgactccactcttgtttgcacatagtactgctacagttatgtctacgctaattaattctccaaac 11078598  T
Q  380 aaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactcttt 472  Q
    || || ||  || |||||| | || ||||| |||||||| |||||||||| ||||||||||||||| || |||||||| ||||||||||||||    
T  11078597 aatgaatgaattgcaaattgttccctcctaggacattaaccaaatcaagcaacaaatcattggtga-tgatcaagctttagtaacgactcttt 11078506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 136 - 472
Target Start/End: Original strand, 16305127 - 16305455
Alignment:
Q  136 tagagtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagag 235  Q
    ||||||||||||| ||||||||| | || || || |||||||||||||| |||| |||||||||||||| |||||  ||| ||||| || ||||||||||    
T  16305127 tagagtctgaagtcaagaacctgga-gttagatatattggttatttgaagacataagtttgcagaaggaatagaagcctgaagcaatgaatatttcagag 16305225  T
Q  236 aaattagaaggcattggatgtttatccactgaagaaggtcaag-aaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcg 334  Q
     || |||||||||||||||  |||| |||| ||| ||  || | ||||| ||||| | || || ||||||||| ||||||||      || |||| |||     
T  16305226 gaaatagaaggcattggatacttatgcactaaag-agcgcaggaaaaggacaatattacatttgtacaaccactactccact------ctcttgtttgca 16305318  T
Q  335 cctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaa 434  Q
      ||||| ||||||||| |||||   ||| |||||||||||| ||||||| ||| |||||||||||  | ||||| |||||||| |||||||||| |||     
T  16305319 tatagtattgctacagcagtgtcgacgcttgttaattctccaaacaaggaatggatttcaaattatttcctcctaggacattaaccaaatcaagcaacag 16305418  T
Q  435 atcattggtgattggtcaagcttcagtaacgactcttt 472  Q
     |||||||||| || ||||||||||  |||||||||||    
T  16305419 gtcattggtga-tgatcaagcttcaacaacgactcttt 16305455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 12409996 - 12410110
Alignment:
Q  359 ctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttc 458  Q
    ||||| |||| ||||||||||||||| ||||||||||||||| |||||||  |||||||| || ||||||| |||||||| || |||||| |||||||||    
T  12409996 ctgctggttatttctccatacaaggaatggttttcaaattattccttccttggacattaaccagatcaagcaacaaatcaatgttgattgatcaagcttc 12410095  T
Q  459 agtaacgactctttg 473  Q
       ||||||||||||    
T  12410096 cacaacgactctttg 12410110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 312 - 478
Target Start/End: Original strand, 18459286 - 18459453
Alignment:
Q  312 ccactactacactattgtctgcgcctagtact-gctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctat 410  Q
    |||||||| |||||||||||| || || |||  |||||| ||||||||||| | |||||||||| ||| |||||  |  ||| ||||||| ||||||||     
T  18459286 ccactactccactattgtctgtgcatattacaagctacacctgtgtctctgatggttaattctctatataaggaaagcattttaaattattccttcctaa 18459385  T
Q  411 gacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtg 478  Q
    ||||||||  ||||||||| ||| |||||||||||||| ||||||||    |||||||||||| ||||    
T  18459386 gacattaactaaatcaagcaacatatcattggtgattgatcaagcttttacaacgactctttgatgtg 18459453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 8729018 - 8729094
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| | |||  |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||    
T  8729018 ttgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggatgcttatccactgaaga 8729094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 9080905 - 9080981
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| | |||  |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||    
T  9080905 ttgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggatgcttatccactgaaga 9080981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 379 - 486
Target Start/End: Complemental strand, 1464231 - 1464124
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtg 478  Q
    |||||| || |||||||||||| || ||||| |||||||| |||||||||| |||||||| || |||||| |||||||||   |||||||||||| ||||    
T  1464231 caaggaatgattttcaaattattccctcctaggacattaaccaaatcaagcaacaaatcaatgttgattgatcaagcttctacaacgactctttgatgtg 1464132  T
Q  479 ctgacacc 486  Q
    ||| ||||    
T  1464131 ctggcacc 1464124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 2903019 - 2903118
Alignment:
Q  2 taaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaaga 101  Q
    |||| ||||||||||||  ||||||| |||||||||  ||||| || ||||||||||||||||| |||||||||||||||| |||  | |||||||||||    
T  2903019 taaagtttataagtcttaaaacaaggtattggttctggaagaataaatgagagcaaaagaatttacaagagaagcttagttgcaagacagagtctgaaga 2903118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 299 - 429
Target Start/End: Complemental strand, 13931975 - 13931844
Alignment:
Q  299 tacaaccaccactccactactacactattgtctgcgcctagtact-gctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaat 397  Q
    ||||||||| ||||||||||| | ||||||| ||||| ||||||  ||||||| ||| ||| |||| |||||||||  ||||||||| ||  ||||||||    
T  13931975 tacaaccactactccactactccgctattgtttgcgcatagtacaagctacagatgtttctttgctggttaattctaaatacaaggaatgaatttcaaat 13931876  T
Q  398 tataccttcctatgacattaatcaaatcaagc 429  Q
    ||| |  |||||||||||||| ||||||||||    
T  13931875 tattctctcctatgacattaaccaaatcaagc 13931844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 13932288 - 13932145
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  ||||| | |||||||||  |||||||||||| |||||||||||||||||  ||||||  ||| ||| || || | |||||    
T  13932288 ctaaaatttataagtcttaaaacaatgtattggttctggaagaacaattgaaagcaaaagaattttcaaaggaagctatgttgcaagtcagattttgaag 13932189  T
Q  101 aattcagagtctgaagaccatcagaagttgatagttagagtctg 144  Q
    |  ||||||||| |||||||| | ||| ||| ||| ||||||||    
T  13932188 acatcagagtctaaagaccattaaaagctgacagtcagagtctg 13932145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 344 - 558
Target Start/End: Original strand, 19658156 - 19658368
Alignment:
Q  344 gctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggt 443  Q
    ||||||||| ||||||| || |||||||| | || |||||| ||||||||||||||| || ||||| |||||||| || ||||||  |||||||| || |    
T  19658156 gctacagctatgtctctactggttaattccctat-caaggaatggttttcaaattattccctcctaggacattaaccatatcaaggaacaaatcactgat 19658254  T
Q  444 gattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgca 543  Q
    ||||| |||||||||   ||||||| |||| |||| || ||||  | ||||  | | |||||||||||||| |||| |||| |||||||| |  || | |    
T  19658255 gattgatcaagcttctacaacgactttttgatgtgttggcacctctacaacatc-tctttcatacctctatataaaggaatgaagacttgaatattagta 19658353  T
Q  544 tagactctacaacat 558  Q
     ||||||||||||||    
T  19658354 gagactctacaacat 19658368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 19696148 - 19696002
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagctta-gtttcaaatctgagtctgaa 99  Q
    ||||||||| ||||||||| ||||| | ||||||||   |||||||  |||||||||| || ||| |||  |||||||| ||| ||| |  |||||||||    
T  19696148 ctaaaatttgtaagtctttaaacaaagtattggttcaggaagaacaggtgagagcaaaggattttacaaaggaagcttatgttgcaagttagagtctgaa 19696049  T
Q  100 gaattcagagtctgaagaccatcagaagttgatagttagagtctgaa 146  Q
    ||| ||||||| |||||||||||||||||||| ||| | ||||||||    
T  19696048 gaagtcagagtttgaagaccatcagaagttgacagtcaaagtctgaa 19696002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 19705762 - 19705616
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagctta-gtttcaaatctgagtctgaa 99  Q
    ||||||||| ||||||||| ||||| | ||||||||   |||||||  |||||||||| || ||| |||  |||||||| ||| ||| |  |||||||||    
T  19705762 ctaaaatttgtaagtctttaaacaaagtattggttcaggaagaacaggtgagagcaaaggattttacaaaggaagcttatgttgcaagttagagtctgaa 19705663  T
Q  100 gaattcagagtctgaagaccatcagaagttgatagttagagtctgaa 146  Q
    ||| ||||||| |||||||||||||||||||| ||| | ||||||||    
T  19705662 gaagtcagagtttgaagaccatcagaagttgacagtcaaagtctgaa 19705616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 344 - 533
Target Start/End: Original strand, 2903353 - 2903541
Alignment:
Q  344 gctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggt 443  Q
    ||||||| |||||||||||| |||||||||||||| ||||| || |||||||| ||| |||||  | | |||||| || ||||||| |||||||  || |    
T  2903353 gctacagttgtgtctctgctggttaattctccatataaggaatgattttcaaactattccttctgaggtcattaaccatatcaagcaacaaatcgatgat 2903452  T
Q  444 gattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttg 533  Q
    ||||| |||| ||||   |||||||||||| |||| || ||||  | |||||  || ||||||||||| || |||| |||| ||||||||    
T  2903453 gattgatcaaacttctacaacgactctttgatgtgttggcacctctacaacg-tttctttcatacctcaatataaaggaatgaagacttg 2903541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 15552411 - 15552290
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    |||||||||||| |||||  ||||||| ||||||| |  ||||| ||||||||||||  |||||| |||||||||||| ||| ||| ||| |||||||||    
T  15552411 ctaaaatttatacgtcttaaaacaaggtattggttatggaagaaaaattgagagcaagcgaatttacaagagaagctttgttgcaagtcttagtctgaag 15552312  T
Q  101 aattcagagtctgaagaccatc 122  Q
    |  ||||||||| |||| ||||    
T  15552311 acatcagagtctaaagagcatc 15552290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12409669 - 12409769
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  | ||||  |||||||||  ||| |||| |||||| |||||||||||||||||||||||||||| || |  ||||||||||    
T  12409669 ctaaaatttataagtcttaaatcaagatattggttctggaaggacaaatgagagaaaaagaattttcaagagaagcttagttttaagttagagtctgaag 12409768  T
Q  101 a 101  Q
    |    
T  12409769 a 12409769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 468
Target Start/End: Complemental strand, 13699689 - 13699227
Alignment:
Q  3 aaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagctta-gtttcaaatctgagtctgaaga 101  Q
    ||||||||||||||||  | ||| | ||||||||| |||||||||  ||||||||  |||||| |||  |||||||| ||| |||  | |||||||||||    
T  13699689 aaaatttataagtcttaaatcaaagtattggttctgaaagaacaaaagagagcaatggaatttgcaaaggaagcttatgttgcaagacagagtctgaaga 13699590  T
Q  102 at-tcagagtctgaagac-catcagaagttgatagttagagtctgaagtgaagaacctgaaagtcagttaaa-ttggttattt-gaatacatgagtttgc 197  Q
       | | ||||||||||  ||||||||| |||  |  ||||||||| || ||||| ||| |||| ||||||  |||||||||| ||| |||   | ||||    
T  13699589 ccataaaagtctgaagattcatcagaagctgactgcgagagtctgacgtcaagaagctggaagttagttaatgttggttattttgaagacacatgattgc 13699490  T
Q  198 agaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaagaaaggtcaatactccactt 297  Q
    |||| ||  ||||  |||||||||| |||||||||||| ||| ||||||||||||||| |||||| |  ||||  ||  | ||||  || || | || ||    
T  13699489 agaaagaaaagaagtctggagcaacaactatttcagaggaataagaaggcattggatgcttatccgcataagagcgtacaaaaagaaca-tagtacaatt 13699391  T
Q  298 atacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaat 397  Q
     ||||||||| ||||||||||       ||| |||| | ||||| |||||||| ||||| |  ||| |||| ||||||| ||||||| ||  ||||||||    
T  13699390 gtacaaccactactccactacc------ttggctgcacatagtattgctacagttgtgtgtacgctggttatttctccaaacaaggaatgaatttcaaat 13699297  T
Q  398 tataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgact 468  Q
    ||| || ||||| |||| ||| |||||||||| ||| ||||||||||| || ||||||||||  |||||||    
T  13699296 tattccctcctaggacaataaccaaatcaagcaacagatcattggtga-tgatcaagcttcaacaacgact 13699227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 315201 - 315144
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  315201 ctggagcaacggctatttcagaggaattagaaggcattgaatgcttatccactgaaga 315144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 19197900 - 19197977
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaa 271  Q
    ||||||||||| | |||  ||||||||||||||| ||||||| |||| |||||||||||||| ||||||| |||||||    
T  19197900 ttgcagaaggaatggaagcctggagcaacgactacttcagaggaatttgaaggcattggatgattatccattgaagaa 19197977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 20418348 - 20418291
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||    
T  20418348 ctggagcaacgactatttcagaggaattagaaggcattggatacttatcctctgaaga 20418291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 472
Target Start/End: Complemental strand, 21317391 - 21317258
Alignment:
Q  337 tagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaat 436  Q
    |||||||||||||| ||||||| |||| |||| ||||||| ||||||| ||  ||||||||||| || ||| | |||| |||  |||| |||| ||| ||    
T  21317391 tagtactgctacagttgtgtctatgctggtta-ttctccaaacaaggaatgagtttcaaattattccctccaaggacaataactaaattaagcaacagat 21317293  T
Q  437 cattggtgattggtcaagcttcagtaacgactcttt 472  Q
    ||||||||| || ||||||||||  |||||||||||    
T  21317292 cattggtga-tgatcaagcttcaacaacgactcttt 21317258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 13654032 - 13653974
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaa 271  Q
    |||||||||| |||||||||||| |||||||||||||| |||  |||||||||||||||    
T  13654032 ctggagcaacaactatttcagaggaattagaaggcattagattattatccactgaagaa 13653974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 4243213 - 4243269
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||    
T  4243213 ctggagcaacgactatttcagaggaatta-aaggcattgaatgcttatccactgaaga 4243269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 16794305 - 16794381
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| | |||  ||| ||||| ||||||||||||| |||||| |||||||||||| ||||||| ||||||    
T  16794305 ttgcagaaggaatggaagcctgaagcaatgactatttcagaggaattaggaggcattggatgcttatccattgaaga 16794381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 19657792 - 19657891
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    |||| |||||||||||||  | ||| | ||||||||| ||||||||| |||||| ||||||||||| ||| |||||||||||  || || ||||||||||    
T  19657792 ctaagatttataagtcttaaagcaaagtattggttctgaaagaacaaatgagag-aaaagaattttaaagtgaagcttagttggaagtcagagtctgaag 19657890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 22766553 - 22766629
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| | |||  || |||||||| ||| ||||||| |||| |||||||||||||| ||||||||||||||    
T  22766553 ttgcagaaggaatggaagcctagagcaacggctaattcagaggaatttgaaggcattggatgcttatccactgaaga 22766629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 14072807 - 14072704
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaagaaaggtcaatactccacttatacaaccaccactc 312  Q
    |||||||||||| || || |||| |||| |||||||||||||| ||||||| ||||||| |     ||||| ||||| | ||||| ||||||||||||||    
T  14072807 ctggagcaacgaataatttagaggaatttgaaggcattggatgcttatccattgaagaacgcgggaaaaggacaatagtacacttgtacaaccaccactc 14072708  T
Q  313 cact 316  Q
    ||||    
T  14072707 cact 14072704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 405 - 536
Target Start/End: Original strand, 17769232 - 17769362
Alignment:
Q  405 tcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttc 504  Q
    |||||||||||||| || ||||||| |||||||| || |||||| |||||||||   || ||||||||| |||| || ||||  | ||||| | ||||||    
T  17769232 tcctatgacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttctaaaatgactctttgatgtgttggcacctctacaacgtc-tttttc 17769330  T
Q  505 atacctctatttaaaagaataaagacttgtag 536  Q
    ||||||||||  |||  ||| |||||||||||    
T  17769331 atacctctataaaaattaatgaagacttgtag 17769362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 405 - 536
Target Start/End: Original strand, 19070533 - 19070663
Alignment:
Q  405 tcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttc 504  Q
    |||||||||||||| || ||||||| |||||||| || |||||| |||||||||   || ||||||||| |||| || ||||  | ||||| | ||||||    
T  19070533 tcctatgacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttctaaaatgactctttgatgtgttggcacctctacaacgtc-tttttc 19070631  T
Q  505 atacctctatttaaaagaataaagacttgtag 536  Q
    ||||||||||  |||  ||| |||||||||||    
T  19070632 atacctctataaaaattaatgaagacttgtag 19070663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 14077405 - 14077449
Alignment:
Q  226 tatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||    
T  14077405 tatttcagaggaattagaagacattggatgcttatccactgaaga 14077449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 21317526 - 21317450
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| |||||  || ||||||||||||||| |||  ||||| |||||||| |||| |||||| |||||||    
T  21317526 ttgcagaaggaatagaagcctagagcaacgactattttagatgaattataaggcatttgatgcttatcctctgaaga 21317450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 369 - 472
Target Start/End: Original strand, 22766723 - 22766826
Alignment:
Q  369 attctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtga-ttggtcaagcttcagtaacgac 467  Q
    |||||| ||||| ||| ||||||| ||||| | || || || |||| ||| |||||||||| ||| ||||||||||| ||| |||||||||| |||||||    
T  22766723 attctctatacatggaatggttttgaaattgttccctcataggacaataaccaaatcaagcaacagatcattggtgatttgatcaagcttca-taacgac 22766821  T
Q  468 tcttt 472  Q
    |||||    
T  22766822 tcttt 22766826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 16882393 - 16882350
Alignment:
Q  225 ctatttcagagaaattagaaggcattggatgtttatccactgaa 268  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||    
T  16882393 ctatttcagaggaattaaaaggcattggatgcttatccactgaa 16882350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 344 - 446
Target Start/End: Complemental strand, 315077 - 314975
Alignment:
Q  344 gctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggt 443  Q
    |||||| || |||||  ||| |||||||||||| ||||||| ||  ||||||||||| |  ||||| |||||||| ||||| |||  ||| |||||||||    
T  315077 gctacaactatgtctacgctggttaattctccaaacaaggaatgaatttcaaattattctctcctaggacattaaccaaataaagaaacagatcattggt 314978  T
Q  444 gat 446  Q
    |||    
T  314977 gat 314975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 15552240 - 15552187
Alignment:
Q  212 actggagcaacgactatttcagagaaattagaaggcattggatgtttatccact 265  Q
    |||||||||||||||||||| ||  ||||||||||| ||| ||| |||||||||    
T  15552240 actggagcaacgactatttcggatgaattagaaggctttgaatgcttatccact 15552187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 17697745 - 17697676
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatcca 263  Q
    ||||||||||| |||||  |||||||||   ||| ||||||| |||| |||||||||||||| |||||||    
T  17697745 ttgcagaaggaatagaagcctggagcaatagctaattcagaggaatttgaaggcattggatgcttatcca 17697676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 27851832 - 27851775
Alignment:
Q  72 gaagctta-gtttcaaatctgagtctgaaga-attcagagtctgaagaccatcagaag 127  Q
    |||||||| ||| ||| |||||||||||||| | ||||||||||||||||||||||||    
T  27851832 gaagcttatgttacaagtctgagtctgaagacaatcagagtctgaagaccatcagaag 27851775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 103; Significance: 8e-51; HSPs: 2)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 141 - 563
Target Start/End: Complemental strand, 5566 - 5153
Alignment:
Q  141 tctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaatt 240  Q
    |||||||||||||||||| || | ||||| |||  ||||||||| |||  |||||||||| ||| |||||  ||||||||||| ||| ||||||| ||||    
T  5566 tctgaagtgaagaacctggaatt-agttatatttattatttgaagacacaagtttgcagatggaatagaagcctggagcaacggctaattcagaggaatt 5468  T
Q  241 agaaggcattggatgtttatccactgaagaaggtca-agaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgcctag 339  Q
     ||||||||||||| |||||||| ||||| || ||  ||||||| ||||| | || || ||||||||| ||||||| |        |||| || || |||    
T  5467 tgaaggcattggatatttatccagtgaaggagctcggagaaaggacaatagtacaattgtacaaccactactccacaa--------ttgtttgtgcatag 5376  T
Q  340 tactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcat 439  Q
    |||||||| |||| |||||||| | |||| || |||| ||||||| |    |||||||||| |||||||| |||||||| |||||||||| ||| |||||    
T  5375 tactgctatagctatgtctctgttggttacttgtccaaacaaggaatataattcaaattattccttcctaggacattaaccaaatcaagcaacagatcat 5276  T
Q  440 tggtgattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttt 539  Q
    ||||||||  |||||||||||||||||||||||| ||||||| || |  | |||||  || ||||||| |||||| |||| |||| |||||||| || ||    
T  5275 tggtgatttatcaagcttcagtaacgactctttgatgtgctggcaactctacaacg-tttctttcatatctctatataaaggaatgaagacttgaagatt 5177  T
Q  540 tgcatagactctacaacatgtaaa 563  Q
    || | |||||||||||||| ||||    
T  5176 tgtagagactctacaacatttaaa 5153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 5741 - 5616
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||| ||||||| |||||||||  |||||||||||| ||||||| | |||||||| ||||||  ||  ||| ||||||| |||||    
T  5741 ctaaaatttataagtctttaaacaaggtattggttctggaagaacaattgaaagcaaaatagttttcaagggaagctatgtcgcaagtctgagtttgaag 5642  T
Q  101 a-attcagagtctgaagaccatcaga 125  Q
    | | ||||||||||||| ||||||||    
T  5641 acaatcagagtctgaaggccatcaga 5616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 137 - 563
Target Start/End: Original strand, 3224 - 3649
Alignment:
Q  137 agagtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagaga 236  Q
    |||||||||||||||||| ||| | ||  |||| |||  ||||| ||| |||  |||||||||||||| || ||  ||||||||| |||||||||||||     
T  3224 agagtctgaagtgaagaatctgga-gtttgttatatttattattcgaagacacaagtttgcagaaggaataaaagtctggagcaatgactatttcagagg 3322  T
Q  237 aattagaaggcattggatgtttatccactgaagaaggtca-agaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgc 335  Q
    |||| |||||||||||||| |||||||| |||| || | | |||||||  |||| |  | || ||||||||| |||||| |||| ||||||||| | | |    
T  3323 aatttgaaggcattggatgcttatccacagaaggagctaagagaaaggataatagtaaaattgtacaaccactactccattactccactattgtttactc 3422  T
Q  336 ctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaa 435  Q
     |||||||  || || ||||| |||||| |||| ||||||||||||||| |  | || ||||||| ||||||||  |||||||  ||||||||| | | |    
T  3423 atagtactattatagttgtgtatctgctggttacttctccatacaaggaatattattgaaattattccttcctagaacattaactaaatcaagcaaaaga 3522  T
Q  436 tcattggtgattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgta 535  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||  | |  | ||| | | | |||||||||||||| |||| |||| |||||||| |    
T  3523 tcattggtgattgattaagcttcagtaacgactctttgatgtgctggtaactctacaatgtc-tctttcatacctctatataaaggaatgaagacttgaa 3621  T
Q  536 gttttgcatagactctacaacatgtaaa 563  Q
    | |||| | |||||||||||||| ||||    
T  3622 gatttgtagagactctacaacatttaaa 3649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 3071 - 3186
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||| |||| || ||||||||   ||||| || ||||||||||| |||||||||| ||||||  ||  ||| |||||||||||||    
T  3071 ctaaaatttataagtctttaaacatggtattggttcaggaagaataaatgagagcaaaataattttcaagggaagctatgtcgcaagtctgagtctgaag 3170  T
Q  101 a-attcagagtctgaa 115  Q
    | | ||||||||||||    
T  3171 acaatcagagtctgaa 3186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 5e-46; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 163 - 567
Target Start/End: Original strand, 19320346 - 19320751
Alignment:
Q  163 tcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatcc 262  Q
    |||||| | ||||||||||||| ||| | | ||||||||||| |||||  || |||||||  ||||||||||| ||||||||||||||||||| |||| |    
T  19320346 tcagtttatttggttatttgaagacacgtgattgcagaaggaatagaaggctagagcaacagctatttcagaggaattagaaggcattggatgcttatac 19320445  T
Q  263 actgaagaaggtca-agaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctg 361  Q
    ||||||||||  || ||||| | ||||| | |  |  ||||||||  ||||||||| ||   |  ||| ||||| ||| |||||||||| ||||||||||    
T  19320446 actgaagaagcgcagagaaatgacaatagtacgatagtacaaccagtactccactattatgttcatgtatgcgcatagcactgctacagttgtgtctctg 19320545  T
Q  362 ctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagt 461  Q
    || ||||||||| |||||||||| ||  ||||||||||| || ||||| |||||||| |||||||||| | | ||||||| |||||| |||||||||  |    
T  19320546 ctggttaattcttcatacaaggaatgaatttcaaattattccctcctaggacattaaccaaatcaagcaatagatcattgatgattgatcaagcttctat 19320645  T
Q  462 aacgactc-tttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcatagactctacaacatgt 560  Q
    |||||||| |||| ||||||| |||   | |||||   | |||||||||||||| |||| |||| || ||||| || |||| | |||||| ||||||| |    
T  19320646 aacgactcttttgatgtgctggcacttctacaacg-tatctttcatacctctatataaaggaatgaaaacttgaagatttgtagagactcaacaacattt 19320744  T
Q  561 aaattgt 567  Q
    |||||||    
T  19320745 aaattgt 19320751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 328 - 563
Target Start/End: Original strand, 15670725 - 15670959
Alignment:
Q  328 gtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaa 427  Q
    |||||| | ||||||||||||||||||||||  ||| |||||||||||| ||||||| ||| ||||||||||| || ||||| |||||||| ||||||||    
T  15670725 gtctgcacatagtactgctacagctgtgtctacgctggttaattctccaaacaaggaatggatttcaaattattccctcctaagacattaaccaaatcaa 15670824  T
Q  428 gctacaaatcattggtgattggtcaagcttcagtaacgactc-tttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataa 526  Q
    || ||| ||||||||||| || | |||||||| |||||| || |||| ||||||| |||   | |||||   | |||||||||||||| |||| |||| |    
T  15670825 gcaacagatcattggtga-tgattaagcttcaataacgaatcttttgatgtgctggcacttctacaacg-tatctttcatacctctatataaaggaatga 15670922  T
Q  527 agacttgtagttttgcatagactctacaacatgtaaa 563  Q
    ||||||| ||||||| | |||||| ||||||| ||||    
T  15670923 agacttgaagttttgtagagactcaacaacatttaaa 15670959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 338 - 558
Target Start/End: Complemental strand, 22683364 - 22683145
Alignment:
Q  338 agtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatc 437  Q
    |||||| |||||  |||||||||| | |||||||||||||||||||| |||||||||||||||  ||||||| |||||||| |||||||| | ||| | |    
T  22683364 agtactactacaattgtgtctctggtggttaattctccatacaaggaatggttttcaaattatttcttcctaggacattaaccaaatcaaacaacatacc 22683265  T
Q  438 attggtgattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagt 537  Q
    ||| ||||||| ||||| |||   |||||||||||| ||  ||||||||  | ||||| | | |||||||||| ||| |||| |||| |||||||| ||     
T  22683264 attagtgattgatcaagattctacaacgactctttgatgcactgacacctctacaacgtc-tctttcatacctttatataaatgaatgaagacttgaaga 22683166  T
Q  538 tttgcatagactctacaacat 558  Q
    ||   ||||||||||||||||    
T  22683165 ttaagatagactctacaacat 22683145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 22683760 - 22683493
Alignment:
Q  11 taagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaagaattcagagt 110  Q
    ||||||||  ||||||  |||||||||  ||||| | ||||||| ||||||||| |||||| |||||| ||| ||| || |||||| ||||  |||||||    
T  22683760 taagtcttaaaacaagttattggttcttgaagaatagttgagagaaaaagaattgtcaagataagctttgttgcaagtcagagtctaaagacatcagagt 22683661  T
Q  111 ctgaagaccatcagaagttgat-------------agtta---gagtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtt 194  Q
    |||||||||||||||||||||              ||| |   ||||||||||||||||||||||| |||| |||||||||||||||||| |||  |||     
T  22683660 ctgaagaccatcagaagttgactatcagaatatgaagtcaccagagtctgaagtgaagaacctgaa-gtcatttaaattggttatttgaagacacaagtg 22683562  T
Q  195 tgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatcca 263  Q
    || ||||||| || || ||| ||||||||||||||||| || || |||||||||||| ||| |||||||    
T  22683561 tgtagaaggaatataaaactagagcaacgactatttcaaaggaaatagaaggcattgaatgcttatcca 22683493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 135 - 264
Target Start/End: Original strand, 33705922 - 33706049
Alignment:
Q  135 ttagagtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcaga 234  Q
    |||||||||||||||||||||||||| || |||||||| ||| ||||||| |||   || ||||||| || ||||| |||| ||||||||||||||||||    
T  33705922 ttagagtctgaagtgaagaacctgaa-gtaagttaaatgggt-atttgaagacacaggtgtgcagaatgaatagaagactgaagcaacgactatttcaga 33706019  T
Q  235 gaaattagaaggcattggatgtttatccac 264  Q
    ||||||||||||| ||||||| ||||||||    
T  33706020 gaaattagaaggctttggatgcttatccac 33706049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 191 - 446
Target Start/End: Complemental strand, 25918779 - 25918530
Alignment:
Q  191 agtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaaga-aaggtcaata 289  Q
    |||||||||||||| |||||  ||||||||| | |||  |||||| ||||||||||||||||||| ||||||||| ||||  | ||  | |||| |||||    
T  25918779 agtttgcagaaggaatagaagtctggagcaatgtctacatcagaggaattagaaggcattggatgcttatccactaaagagcg-cagtagaaggacaata 25918681  T
Q  290 ctccacttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggt 389  Q
     | || || ||||||||| ||||||||      || |||||| | | | ||||||||| |||| ||||| |||| ||||||||| || ||||| | |||     
T  25918680 gtacaattgtacaaccactactccact------ctcttgtctacacattgtactgctagagctatgtctatgctagttaattctacaaacaagaaatgga 25918587  T
Q  390 tttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgat 446  Q
    ||||||||||| || ||||| |||||||| |||||||||| ||| ||||||||||||    
T  25918586 tttcaaattattccctcctaggacattaaccaaatcaagcaacatatcattggtgat 25918530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 33705772 - 33705872
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  ||||||| || ||||||| |||||||| ||||||||||| ||||| ||| |||||||| ||| |||||||||||||||||    
T  33705772 ctaaaatttataagtcttaaaacaaggtatcggttctagaagaacaaatgagagcaaaaaaatttacaaaagaagcttggttgcaaatctgagtctgaag 33705871  T
Q  101 a 101  Q
    |    
T  33705872 a 33705872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 137 - 273
Target Start/End: Original strand, 19643600 - 19643734
Alignment:
Q  137 agagtctgaagtgaagaacctgaaagtcagttaa-attggttatttgaatacatgagtttgcagaaggagtagaatactggagcaa--cgactatttcag 233  Q
    ||||||||||||||||||||||||     ||||| |||||||||||||| |||  ||| |||||||||| || || ||||||||||  | ||||||| ||    
T  19643600 agagtctgaagtgaagaacctgaa-----gttaatattggttatttgaagacacaagtgtgcagaaggaatataagactggagcaaaacaactattttag 19643694  T
Q  234 agaaattagaaggcattggatgtttatccactgaagaagg 273  Q
    || ||||||||||||||||||| || ||||||||||||||    
T  19643695 aggaattagaaggcattggatgcttgtccactgaagaagg 19643734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 24440701 - 24440777
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| |||||  ||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  24440701 ttgcagaaggaatagaagcctggagcaactgctatttcagaggaattagaaggcattggatgtttatccactgaaga 24440777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 19643446 - 19643546
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    |||||||||| |||||||  |||||   ||||||| |  |||||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||    
T  19643446 ctaaaatttacaagtcttaaaacaaataattggttttgtaagaacaattgagagcaaaagatttttcaagagaagcttagttgcaagtcagagtctgaag 19643545  T
Q  101 a 101  Q
    |    
T  19643546 a 19643546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22524590 - 22524711
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    |||||||||||| |||||  ||| | | |||||||||  |||||||| | ||||||||  |||||||||| |||| |||||| ||| || || |||||||    
T  22524590 ctaaaatttatatgtcttaaaaccaagtattggttctggaagaacaaattagagcaaataaattttcaagggaagtttagttgcaagtcagaatctgaag 22524689  T
Q  101 aattcagagtctgaagaccatc 122  Q
    || |||||||||||||||||||    
T  22524690 aagtcagagtctgaagaccatc 22524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 368
Target Start/End: Original strand, 14793932 - 14794133
Alignment:
Q  160 aagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgttta 259  Q
    ||||||||||||||||||| ||||| |||  | |||| |||||||  ||||  ||||||||||||||||||||||| ||||| ||| ||||| ||| |||    
T  14793932 aagtcagttaaattggttaattgaagacacaaatttgtagaaggaacagaagcctggagcaacgactatttcagaggaattataagacattgcatgctta 14794031  T
Q  260 tccactgaagaaggtc-aagaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtct 358  Q
      ||| |||||||  | |||||||| ||||| | || || |||||        ||||| || ||||||| ||||||| ||||||| |||||| |||||||    
T  14794032 ctcaccgaagaagaacaaagaaaggacaataatacatttgtacaa--------ccactgctccactattatctgcgcatagtactactacagttgtgtct 14794123  T
Q  359 ctgctcgtta 368  Q
    ||||| ||||    
T  14794124 ctgctggtta 14794133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 25918999 - 25918868
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagctta-gtttcaaatctgagtctgaa 99  Q
    ||||||||||||||||||  ||||||| |||||||||| |||||||| |||||||||  |||||| |||  |||||||| ||| |||  |  || || |     
T  25918999 ctaaaatttataagtcttaaaacaaggtattggttctagaagaacaaatgagagcaatggaatttacaaaggaagcttatgttgcaagccaaagcctaat 25918900  T
Q  100 gaattcagagtctgaagaccatcagaagttga 131  Q
    ||| |||||||||||||| |||||||||||||    
T  25918899 gaagtcagagtctgaagaacatcagaagttga 25918868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 379 - 533
Target Start/End: Original strand, 40202552 - 40202705
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtg 478  Q
    |||||| | ||||||||||||| |||||||| ||||| || |||||||| | |||||||| || | |||| |||||||||  |||| |||||||| ||||    
T  40202552 caaggaatagttttcaaattattccttcctaggacatcaaccaaatcaaacaacaaatcaatgtttattgatcaagcttctttaacaactctttgatgtg 40202651  T
Q  479 ctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttg 533  Q
    ||| ||||  | ||||| | | |||| ||||||||| |||| |||| ||||||||    
T  40202652 ctggcacctctacaacgtcatgtttc-tacctctatataaaggaatgaagacttg 40202705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 24157945 - 24157888
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||    
T  24157945 ctggagcaacgactattttagaggaattagaagacattggatgcttatccactgaaga 24157888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 21911046 - 21911118
Alignment:
Q  198 agaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||| |||||  ||||||||||||| |||| ||||||||||||||||||| |||| ||||||||| ||||    
T  21911046 agaaggaatagaagcctggagcaacgacgattttagagaaattagaaggcatttgatgcttatccactaaaga 21911118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 27940289 - 27940191
Alignment:
Q  51 agagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaagaattcagagtctgaagaccatc-agaagttgatagttagagtctgaagt 148  Q
    |||||||| || |||||||| ||||||||||| ||| || || ||||||||| ||||||||||||||| ||| ||||| |||  || ||||||||||||    
T  27940289 agagcaaaggagttttcaagggaagcttagttgcaagtcagaatctgaagaagtcagagtctgaagactatctagaagatgactgtcagagtctgaagt 27940191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 10896411 - 10896465
Alignment:
Q  206 tagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttat 260  Q
    |||||| ||||||||||| ||||||||||  ||||||||||||||||||| ||||    
T  10896411 tagaatcctggagcaacggctatttcagaagaattagaaggcattggatgcttat 10896465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 22383581 - 22383527
Alignment:
Q  216 gagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||| |||||| |||| ||||||||||||||||||| ||||||||| ||||    
T  22383581 gagcaacggctattttagaggaattagaaggcattggatgcttatccactaaaga 22383527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 533
Target Start/End: Complemental strand, 27939924 - 27939771
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtg 478  Q
    |||||| || |||||||||||| |||||||| || |||||| | ||||||| |||||||| || |||||| |||| ||||   | ||| |||||| ||||    
T  27939924 caaggaatgattttcaaattattccttcctaggatattaattatatcaagcaacaaatcaatgttgattgatcaaacttctacaccgattctttgatgtg 27939825  T
Q  479 ctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttg 533  Q
     ||||||   | ||||| | | ||||||||| |||| |||| |||||||||||||    
T  27939824 ttgacacatctacaacgtc-tctttcataccactatataaaggaataaagacttg 27939771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 15668545 - 15668598
Alignment:
Q  217 agcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||| ||||||||||  ||||| ||||||||||||| ||||||||||||||    
T  15668545 agcaacggctatttcagatgaattaaaaggcattggatgcttatccactgaaga 15668598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 24844266 - 24844205
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatg 255  Q
    |||||||| || |||||  ||||||||||||||||||||||| | || ||||||||||||||    
T  24844266 ttgcagaaagaatagaagcctggagcaacgactatttcagaggagttggaaggcattggatg 24844205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14792779 - 14792847
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaa 69  Q
    ||||||||||||| ||||  ||||||| ||| ||||| |||| |||||||||  |||||||||||||||    
T  14792779 ctaaaatttataactcttaaaacaaggtattagttctgaaaggacaattgagtacaaaagaattttcaa 14792847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 19320199 - 19320287
Alignment:
Q  40 aagaacaattgagagcaaaagaattttcaagagaagctta-gtttcaaatctgagtctgaagaattcagagtctgaagaccatcagaag 127  Q
    |||||||| ||| ||||||||||| | |||   ||||||| ||| ||| ||  ||||||||||| ||||||||||||||||||||||||    
T  19320199 aagaacaaatgaaagcaaaagaatctacaaagaaagcttatgttgcaagtcaaagtctgaagaagtcagagtctgaagaccatcagaag 19320287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 20568264 - 20568200
Alignment:
Q  198 agaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatcc 262  Q
    ||||||| |||||  ||||||||||| |||||| | || ||||||||||||||||||| ||||||    
T  20568264 agaaggaatagaagcctggagcaacggctattttataggaattagaaggcattggatgcttatcc 20568200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 27640017 - 27640136
Alignment:
Q  2 taaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaaga 101  Q
    ||||| |||||||||||  ||| ||| |||||||||  | ||| || |||||| ||||| |||| |||| ||||||| ||| ||| || |||||| ||||    
T  27640017 taaaacttataagtcttgaaactaggtattggttctggaggaaaaaatgagagaaaaagtatttacaagggaagcttggttgcaagtcagagtct-aaga 27640115  T
Q  102 attcagagtctgaagaccatc 122  Q
      |||||||||||||||||||    
T  27640116 catcagagtctgaagaccatc 27640136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 369 - 472
Target Start/End: Complemental strand, 21846101 - 21845999
Alignment:
Q  369 attctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgact 468  Q
    |||||| ||||||||| ||  ||| ||||| | || ||||| |||| ||| |||||||||| ||| |||||||||||||  ||||||||||  |||||||    
T  21846101 attctctatacaaggaatgaatttgaaattgttccctcctaggacaataaccaaatcaagcaacagatcattggtgatt-atcaagcttcaacaacgact 21846003  T
Q  469 cttt 472  Q
    ||||    
T  21846002 cttt 21845999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 21846279 - 21846208
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccact 265  Q
    ||||||||||| | |||  || ||||||||||||||||| || |||||||||||||| ||||  ||||||||    
T  21846279 ttgcagaaggaatggaagcctagagcaacgactatttcaaaggaattagaaggcatttgatgcatatccact 21846208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 367 - 472
Target Start/End: Complemental strand, 20568091 - 20567985
Alignment:
Q  367 taattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtga-ttggtcaagcttcagtaacg 465  Q
    |||||||| ||||||||| | | ||| ||||| | ||||| || |||| ||| ||||| |||| ||| ||||||||||| ||| ||||||||||  ||||    
T  20568091 taattctctatacaaggaattgatttaaaattgttccttcttaggacaataaccaaataaagcaacagatcattggtgatttgatcaagcttcaacaacg 20567992  T
Q  466 actcttt 472  Q
    |||||||    
T  20567991 actcttt 20567985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 472
Target Start/End: Original strand, 10896581 - 10896685
Alignment:
Q  367 taattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacga 466  Q
    |||||||| ||| ||||| ||  ||| ||||| | || ||||| |||| ||| |||||||||| ||| |||||||||||||  ||||||||||  |||||    
T  10896581 taattctctataaaaggaatgaatttgaaattgttccatcctaggacaataaccaaatcaagcaacatatcattggtgatt-atcaagcttcaacaacga 10896679  T
Q  467 ctcttt 472  Q
    ||||||    
T  10896680 ctcttt 10896685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 7e-45; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 172 - 472
Target Start/End: Complemental strand, 26703714 - 26703411
Alignment:
Q  172 ttggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaa 271  Q
    ||||||||| ||| |||  ||||||||||||||  ||||  ||||| | | | ||||||||||||||||||||| ||||| ||| ||||||||||||||     
T  26703714 ttggttattggaagacacaagtttgcagaaggaacagaagcctggaacgatggctatttcagagaaattagaagacattgtatgcttatccactgaagag 26703615  T
Q  272 ggtcaagaaaggtcaatactccacttatacaaccaccactccactactacactat--tgtctgcgcctagtactgctacagctgtgtctctgctcgttaa 369  Q
     |   | |||||  |||||| || || ||||||||  ||||||||| | ||||||  ||||||| | ||||| |||||||| |||| ||   || |||||    
T  26703614 cgcagaaaaaggataatactacatttgtacaaccattactccactattccactatcatgtctgcacatagtattgctacagttgtgcctacactggttaa 26703515  T
Q  370 ttctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtga-ttggtcaagcttcagtaacgact 468  Q
    ||||||| ||||||| ||  ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||||||| |||||||||    
T  26703514 ttctccaaacaaggaatgaatttcaaattattccttcctatgacattaaccaaatcaagcaacaaatcattggtgatttgatcaagcttcggtaacgact 26703415  T
Q  469 cttt 472  Q
    ||||    
T  26703414 cttt 26703411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 23054503 - 23054427
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23054503 ttgcagaaggaatagaagcctggagcaacgactatttcagagaaattagaaggcattggatgtttatccaatgaaga 23054427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 344 - 482
Target Start/End: Complemental strand, 8698837 - 8698699
Alignment:
Q  344 gctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggt 443  Q
    |||||| ||||||||||||||  ||||||| ||||| || | |||||||||||| || |||||||| ||||||||  ||||||||| | | |||||||||    
T  8698837 gctacaactgtgtctctgctcactaattctacataccagaaatggttttcaaatcattccttcctaggacattaacaaaatcaagcaatagatcattggt 8698738  T
Q  444 gattggtcaagcttcagtaacgactctttgctgtgctga 482  Q
    ||||| |||| |||||  |||||||||||| || |||||    
T  8698737 gattgatcaaacttcaccaacgactctttgatgggctga 8698699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 344 - 558
Target Start/End: Complemental strand, 31359304 - 31359091
Alignment:
Q  344 gctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggt 443  Q
    |||||| |||||||||| |  ||||||||| |||||||||| || |||||||||||| |  ||||| || ||||| || ||||||| |||||||| || |    
T  31359304 gctacaactgtgtctctaccggttaattcttcatacaaggaatgattttcaaattattctctcctaagagattaaccatatcaagcaacaaatcaatgat 31359205  T
Q  444 gattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgca 543  Q
    ||||| |||||||||   || ||||||||| ||||||| ||||  | ||||| | | |||||||| ||||| |||| |||| |||||||| || || | |    
T  31359204 gattgatcaagcttctacaatgactctttgatgtgctggcacctctacaacgtc-tctttcatacatctatataaatgaatgaagacttgaagattagta 31359106  T
Q  544 tagactctacaacat 558  Q
     ||||||||||||||    
T  31359105 gagactctacaacat 31359091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 2819052 - 2819174
Alignment:
Q  4 aaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaagaat 103  Q
    |||||||||||||||  ||||||| |||||| ||   |||| |||||||| |||||||||||||||||||| ||| ||| ||| |||| |||||| ||      
T  2819052 aaatttataagtcttaaaacaaggtattggtcctggtagaataattgagaacaaaagaattttcaagagaaactttgttgcaagtctgggtctgaggaca 2819151  T
Q  104 tcagagtctgaagaccatcagaa 126  Q
    | |||||||||||||||||||||    
T  2819152 taagagtctgaagaccatcagaa 2819174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 21683115 - 21683213
Alignment:
Q  172 ttggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||| |||  || ||||||||||| |||||  ||| |||||||||||||||| || ||||||||||||||||||| ||||||| ||||||    
T  21683115 ttggttatttgaagacacaagattgcagaaggaatagaagtctgaagcaacgactatttcaaaggaattagaaggcattggatgcttatccagtgaaga 21683213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 16478691 - 16478747
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaag 269  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  16478691 ctggagcaacgactatttcagagaaattagaaggcattggatgcttatctactgaag 16478747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 25399725 - 25399625
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    |||||||||||| |||||  ||||| | |||||||||| |||||||| | |||||||| ||||||||||||||||| ||||| ||| || ||||||||||    
T  25399725 ctaaaatttatatgtcttaaaacaaagtattggttctataagaacaaattagagcaaatgaattttcaagagaagcctagttgcaagtcagagtctgaag 25399626  T
Q  101 a 101  Q
    |    
T  25399625 a 25399625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 345 - 567
Target Start/End: Original strand, 2819415 - 2819636
Alignment:
Q  345 ctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtg 444  Q
    |||||| | |||||||||| |||||||||||||||||||| |  |||||||||||  || || ||  ||||||| ||||| |||  | | ||||||||||    
T  2819415 ctacagttatgtctctgctggttaattctccatacaaggaataattttcaaattactccctcatagaacattaaccaaattaagtaaaagatcattggtg 2819514  T
Q  445 attggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcat 544  Q
    |||| |||| |||  ||||||||| |||| |||| |||||||  | ||||| | | |||||||||||||| ||||  ||| |||| ||| || || | ||    
T  2819515 attgatcaaacttttgtaacgactttttgatgtgatgacacccctacaacgtc-tctttcatacctctatataaagaaatgaagatttgaagattagtat 2819613  T
Q  545 agactctacaacatgtaaattgt 567  Q
    |||||||| |||||  |||||||    
T  2819614 agactctataacataaaaattgt 2819636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 14750876 - 14750977
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||| ||||  ||||| | ||||||||| ||||||||| | ||||||||||||||| |||  |||| || ||||||| ||||||| |||||    
T  14750876 ctaaaatttataaatcttgaaacaaagtattggttctgaaagaacaaataagagcaaaagaatttacaactgaagattggtttcaagtctgagtatgaag 14750975  T
Q  101 aa 102  Q
    ||    
T  14750976 aa 14750977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 26280007 - 26280079
Alignment:
Q  198 agaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||| |||||  ||||||||||||||||||||||  ||||||||| ||||||||| ||||||| ||||||    
T  26280007 agaaggaatagaagcctggagcaacgactatttcagatgaattagaagtcattggatgcttatccattgaaga 26280079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 18517117 - 18517175
Alignment:
Q  197 cagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatg 255  Q
    |||||||| |||||  |||||||||||||||||||| || |||||||||||||||||||    
T  18517117 cagaaggaatagaagcctggagcaacgactatttcaaaggaattagaaggcattggatg 18517175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 2819282 - 2819336
Alignment:
Q  206 tagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttat 260  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||| |||| ||||    
T  2819282 tagaagactggagcaacggctatttcagaggaattagaaggcattagatgcttat 2819336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 9346869 - 9346814
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||||||||||||| |  ||||||||||||||||||| ||||||||| ||||    
T  9346869 ctggagcaacgactatttcaaa--aattagaaggcattggatgcttatccactaaaga 9346814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 16478458 - 16478520
Alignment:
Q  3 aaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattt 65  Q
    |||||||||||||| || ||||||| |||||||||  |||||||| |||||||||| ||||||    
T  16478458 aaaatttataagtccttaaacaaggtattggttctggaagaacaaatgagagcaaatgaattt 16478520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 402 - 472
Target Start/End: Original strand, 18517316 - 18517385
Alignment:
Q  402 ccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactcttt 472  Q
    |||||||| |||| |||||| ||||||| ||||||||||||||| || ||||||||||  |||||||||||    
T  18517316 ccttcctaggacaataatcatatcaagcaacaaatcattggtga-tgatcaagcttcaacaacgactcttt 18517385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 473
Target Start/End: Complemental strand, 10153964 - 10153871
Alignment:
Q  380 aaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttg 473  Q
    ||||| ||||||||||||||| ||||| |   ||||||| |||||||||| |||||||| || || ||| ||||||||   |||||||||||||    
T  10153964 aaggaatggttttcaaattattccttctttgtacattaaccaaatcaagcaacaaatcaatgatgtttgatcaagcttttctaacgactctttg 10153871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 16870069 - 16870024
Alignment:
Q  225 ctatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  16870069 ctatttcagaggaattagaaggcattggatgcttatccactaaaga 16870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 18129994 - 18130039
Alignment:
Q  225 ctatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||    
T  18129994 ctatttcagaggaattagaaggtattggatgcttatccactgaaga 18130039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 501 - 558
Target Start/End: Original strand, 23935342 - 23935399
Alignment:
Q  501 tttcatacctctatttaaaagaataaagacttgtagttttgcatagactctacaacat 558  Q
    |||||||||||||| ||||||||| |||||||| || || ||||| ||||||||||||    
T  23935342 tttcatacctctatataaaagaatgaagacttgaagattagcatatactctacaacat 23935399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 31359612 - 31359551
Alignment:
Q  40 aagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaaga 101  Q
    |||||| | ||||||||||||| |||||||||||| ||||||| ||| || |||||||||||    
T  31359612 aagaacgaatgagagcaaaagatttttcaagagaaacttagttgcaagtcagagtctgaaga 31359551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 389 - 473
Target Start/End: Complemental strand, 25399305 - 25399221
Alignment:
Q  389 ttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttg 473  Q
    ||||||||||||   |||||| |||||||| |||||||||| |||||||| || |||||  |||||||||   ||||||||||||    
T  25399305 ttttcaaattattgattcctaggacattaaccaaatcaagcaacaaatcaatgttgattaatcaagcttctccaacgactctttg 25399221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 22640217 - 22640130
Alignment:
Q  386 tggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttg 473  Q
    ||||||||||||||| || || ||  ||||||| |||||||||| |||||||| || |||||| |||| |||| || ||| |||||||    
T  22640217 tggttttcaaattattccctcatagaacattaaccaaatcaagcaacaaatcaatgttgattgatcaaacttctgttacgcctctttg 22640130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 26280217 - 26280294
Alignment:
Q  407 ctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactc-tttgctgtgctgaca 484  Q
    |||||||||||| |||||||||| ||| ||||||||||| |  ||||||||||  |||||||| |||| ||||||||||    
T  26280217 ctatgacattaaccaaatcaagcaacatatcattggtga-taatcaagcttcaacaacgactcttttgatgtgctgaca 26280294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 5e-43; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 137 - 446
Target Start/End: Original strand, 19505406 - 19505716
Alignment:
Q  137 agagtctgaagtgaagaacctgaaagtcagttaaa-ttggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagag 235  Q
    |||||||||||| ||||||||| | || ||||||| ||||||||||||| |||  |||||||||||||| |||||| || |||||||| |||||||||||    
T  19505406 agagtctgaagtcaagaacctgga-gttagttaaagttggttatttgaagacacaagtttgcagaaggaatagaatcctcgagcaacggctatttcagag 19505504  T
Q  236 aaattagaaggcattggatgtttatccactgaagaaggtcaagaaaggtcaatactccacttatacaaccaccactccactactacac--tattgtctgc 333  Q
     ||||||||||||||| ||| ||| |||||  || || ||| |||||| ||||| | || || ||||||||| ||||||||||| |||  | ||||||||    
T  19505505 gaattagaaggcattgaatgcttacccactatag-agctcatgaaaggacaatagtacaattgtacaaccactactccactactccactttcttgtctgc 19505603  T
Q  334 gcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctaca 433  Q
       |||||||||||||| |||||||   || ||||||| | || ||||||| ||  ||| ||||||| || ||||| |||||||| |||||||||| |||    
T  19505604 atatagtactgctacagttgtgtctacactggttaattatgcaaacaaggaatgaatttaaaattattccctcctaggacattaaccaaatcaagcaaca 19505703  T
Q  434 aatcattggtgat 446  Q
     ||||||||||||    
T  19505704 gatcattggtgat 19505716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 137 - 563
Target Start/End: Complemental strand, 12541814 - 12541396
Alignment:
Q  137 agagtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagaga 236  Q
    |||||| ||||| |||||||| ||||||| ||||| ||||||||||||  ||  |||||||||||| | |||||  |||||| ||||||||||| ||||     
T  12541814 agagtcagaagtaaagaacct-aaagtcaattaaagtggttatttgaag-cacaagtttgcagaagaaatagaagcctggagaaacgactattttagagg 12541717  T
Q  237 aattagaaggcattggatgtttatccactgaagaaggtca-agaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgc 335  Q
    |||||||||||||||||| |||||||  ||||| || | | |||||||  |||| | || || ||||||||| |||||||||        ||||||||||    
T  12541716 aattagaaggcattggatttttatcctttgaaggagctaagagaaaggataatagtacaattgtacaaccactactccacta--------ttgtctgcgc 12541625  T
Q  336 ctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaa 435  Q
      | |||| ||| || |||||||||||| ||||||||| |||| ||||| ||  ||||||||||| ||||||||||  ||||| ||||| |||| ||| |    
T  12541624 agaatactactatagttgtgtctctgctggttaattctacatataaggaatgaatttcaaattattccttcctatgctattaaccaaataaagcaacaga 12541525  T
Q  436 tcattggtga-ttggtc-aagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttg 533  Q
    ||||| ||||  || || ||||||||| |||||||||||| |||||||||| |  ||||||||| | ||||| |||||||| |||| |||  ||||||||    
T  12541524 tcattagtgacatgatcaaagcttcagcaacgactctttgatgtgctgacaactctgcaacgcc-tctttcacacctctatataaaggaaagaagacttg 12541426  T
Q  534 tagttttgcatagactctacaacatgtaaa 563  Q
     || || | | |||||||||||||| ||||    
T  12541425 aagattagtagagactctacaacatttaaa 12541396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 1208453 - 1208709
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagctta-gtttcaaatctgagtctgaa 99  Q
    ||||||||||||||||||  || |||| | ||||| |  ||||| |  |||||||||   ||||| |||  |||||||| ||| ||| ||||||||||||    
T  1208453 ctaaaatttataagtcttaaaaaaaggtaatggttttggaagaatagatgagagcaatgaaatttacaaaggaagcttatgttgcaagtctgagtctgaa 1208552  T
Q  100 gaattcagagtctgaagaccatcagaagttgatagttagagtctgaagtgaagaacctgaaagtcagttaaa-ttggttatttgaatacatgagtttgca 198  Q
    ||| |||||||||||||| ||||||||| |||  |  |||||||||||| |||||||||  ||| ||||||| ||||||||||||| |||  |||||| |    
T  1208553 gaagtcagagtctgaagaacatcagaagctgactgccagagtctgaagtcaagaacctg-gagttagttaaatttggttatttgaagacacaagtttgta 1208651  T
Q  199 gaaggagtagaatactggag-caacgactatttcagagaaattagaaggcattggatg 255  Q
    |||||| |||||  |||| | ||||||||||||||||| |||| ||||||||||||||    
T  1208652 gaaggaatagaagcctggggccaacgactatttcagaggaatttgaaggcattggatg 1208709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 12541985 - 12541837
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagctt-agtttcaaatctgagtctgaa 99  Q
    ||||||||||||||||||| ||| | | | ||||||||||||||||| |||||||||| |||||| |||  ||||||| ||||  || || |||||||||    
T  12541985 ctaaaatttataagtctttaaactaagtactggttctaaaagaacaaatgagagcaaatgaatttacaaaggaagcttaagttgtaagtcagagtctgaa 12541886  T
Q  100 gaattcagagtctgaagaccatcagaagttgatagttagagtctgaagt 148  Q
    ||| |||||||||||||||||||||||| ||| | | ||||| ||||||    
T  12541885 gaaatcagagtctgaagaccatcagaagctgacaatcagagtatgaagt 12541837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 338 - 472
Target Start/End: Original strand, 1209918 - 1210051
Alignment:
Q  338 agtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatc 437  Q
    |||||||||||| ||||||||  ||| |||||||||||| |||| || ||  ||||||||||| || |||||||||||||| |||||||||  ||| |||    
T  1209918 agtactgctacaactgtgtctacgctggttaattctccaaacaatgaatgaatttcaaattattccctcctatgacattaaccaaatcaagaaacagatc 1210017  T
Q  438 attggtgattggtcaagcttcagtaacgactcttt 472  Q
    |||||||| || ||||||||||  |||||||||||    
T  1210018 attggtga-tgatcaagcttcaacaacgactcttt 1210051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 18558150 - 18558074
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| || ||  || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18558150 ttgcagaaggaatataagcctagagcaacgactatatcagagaaattagaaggcattggatgtttatccactgaaga 18558074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 17916845 - 17916921
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| | |||  |||||||||||||||||| |||| ||||||||||||||||| | ||||||||| ||||    
T  17916845 ttgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggaagcttatccactaaaga 17916921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 379 - 486
Target Start/End: Original strand, 24498323 - 24498431
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagc-ttcagtaacgactctttgctgt 477  Q
    |||||| ||| ||||||||||| ||||||||||||||||| || ||||||| |||||||| || |||||| | |||| ||   ||||||||||||| |||    
T  24498323 caaggaatgggtttcaaattattccttcctatgacattaagcatatcaagcaacaaatcaatgttgattgatgaagcattttctaacgactctttgatgt 24498422  T
Q  478 gctgacacc 486  Q
    | |||||||    
T  24498423 gatgacacc 24498431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 379 - 478
Target Start/End: Complemental strand, 17687917 - 17687818
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtg 478  Q
    |||||| ||||||||||||||| ||||||||  ||||||| || ||||||| | |||||| || |||||| |||||||||   |||||||||||| ||||    
T  17687917 caaggaatggttttcaaattattccttcctagaacattaaccatatcaagcaataaatcaatgatgattgatcaagcttctacaacgactctttgatgtg 17687818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 17689710 - 17689595
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    |||||||||||| |||||  ||||| | |||||||||  || ||||| | |||||||| ||||||||||| ||||||||||| ||| || || ||| |||    
T  17689710 ctaaaatttatatgtcttaaaacaaagtattggttctggaacaacaaattagagcaaaggaattttcaagggaagcttagttgcaagtcagaatctaaag 17689611  T
Q  101 aattcagagtctgaag 116  Q
    || ||||||| |||||    
T  17689610 aagtcagagtatgaag 17689595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 386 - 539
Target Start/End: Complemental strand, 27739810 - 27739658
Alignment:
Q  386 tggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtgctgacac 485  Q
    ||||||||||||||  |  ||||| |||||||| || ||||||| |||||||| || |||||| |||| ||||   |||||||||||| |||| ||||||    
T  27739810 tggttttcaaattactcactcctaagacattaaccatatcaagcaacaaatcaatgatgattgatcaaacttctacaacgactctttgatgtgatgacac 27739711  T
Q  486 cattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttt 539  Q
    |  | ||||| | | |||||||||||||| |||| |||| || ||||| |||||    
T  27739710 ctctacaacgtc-tatttcatacctctatataaaggaatgaaaacttgaagttt 27739658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 24635671 - 24635609
Alignment:
Q  60 gaattttcaagagaagcttagtttcaaatctgagtctgaagaattcagagtctgaagaccatc 122  Q
    |||||||||||||||||  |||| ||| || |||||||||||| || ||||||||||||||||    
T  24635671 gaattttcaagagaagccaagttgcaagtcggagtctgaagaagtcggagtctgaagaccatc 24635609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 472
Target Start/End: Complemental strand, 18557974 - 18557870
Alignment:
Q  367 taattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacga 466  Q
    ||||||||||| |||||| ||| ||| ||||| | || ||||| |||| ||| |||||||||| ||| |||||||||||||  |||||||| |  |||||    
T  18557974 taattctccattcaaggaatggatttgaaattgttccctcctaagacaataaccaaatcaagcaacagatcattggtgatt-atcaagctttaacaacga 18557876  T
Q  467 ctcttt 472  Q
    ||||||    
T  18557875 ctcttt 18557870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 27740159 - 27740110
Alignment:
Q  52 gagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaaga 101  Q
    ||||||||||||||||||||||| ||||||| ||| || |||||||||||    
T  27740159 gagcaaaagaattttcaagagaaacttagttgcaagtcagagtctgaaga 27740110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 380 - 458
Target Start/End: Complemental strand, 24635254 - 24635176
Alignment:
Q  380 aaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttc 458  Q
    ||||| ||||||| | ||||| ||||| ||||||||||| ||||| |||| |||||||| || || ||| |||||||||    
T  24635254 aaggaatggtttttagattattccttcatatgacattaaccaaattaagcaacaaatcaatgatgtttgatcaagcttc 24635176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 7e-36; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 134 - 472
Target Start/End: Complemental strand, 16472880 - 16472535
Alignment:
Q  134 gttagagtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcag-------aaggagtagaatactggagcaacgact 226  Q
    |||||||||||||||||||| |||||| || |||||||||||||||||||| | |  ||| | |||       ||||| ||||| ||||||| |||||||    
T  16472880 gttagagtctgaagtgaagagcctgaa-gttagttaaattggttatttgaagaaacaagtgttcagtgtgtataaggaatagaagactggagtaacgact 16472782  T
Q  227 atttcagagaaattagaaggcattggatgtttatccactgaagaaggtca-agaaaggtcaatactccacttatacaaccaccactccactactacacta 325  Q
     ||||| ||  |||||||||||||||||| ||||||||| ||| |   || ||||||| ||||| | || |||||||||||  ||||||||||| ||  |    
T  16472781 ttttcaaaggcattagaaggcattggatgcttatccactaaagga---cagagaaaggacaatagtacaattatacaaccaatactccactactccaaca 16472685  T
Q  326 ttgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctcc----atacaaggagtggttttcaaattataccttcctatgacattaatca 421  Q
    || ||||||| || || || || || |||||||||||| |||||||||||    ||| ||||| |||||| |||||||| |||||||| ||||| || ||    
T  16472684 ttttctgcgcataatattgttatagttgtgtctctgctggttaattctccatatatataaggaatggtttacaaattattccttcctaggacatgaacca 16472585  T
Q  422 aatcaagctacaaatcattggtgattggtcaagcttcagtaacgactcttt 472  Q
    |||||| | ||| ||||||||||| || ||||| |||||||| ||||||||    
T  16472584 aatcaaacaacagatcattggtga-tgatcaagtttcagtaaagactcttt 16472535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 248 - 472
Target Start/End: Complemental strand, 16412814 - 16412589
Alignment:
Q  248 attggatgtttatccactgaagaaggtcaa-gaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgcctagtactgct 346  Q
    |||||||| ||||||| ||||||| ||||  |||||| ||||| | || || ||||||||| ||||||||||| ||||||||||||||| |||| || ||    
T  16412814 attggatgcttatccattgaagaatgtcagtgaaaggacaatagtacaattgtacaaccacaactccactactccactattgtctgcgcgtagtgctact 16412715  T
Q  347 acagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgat 446  Q
    |||||| | |||| | | |||||||||||||||||||| ||  ||||| ||||| |||||||| || ||||| |||||||||  |||||||||| |||||    
T  16412714 acagctatctctcggttagttaattctccatacaaggaatgaatttcatattattccttcctaggaaattaaccaaatcaaggaacaaatcatttgtgat 16412615  T
Q  447 tggtcaagcttcagtaacgactcttt 472  Q
    ||   |||||||   |||||||||||    
T  16412614 tgagaaagcttctacaacgactcttt 16412589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 337 - 481
Target Start/End: Complemental strand, 23125924 - 23125781
Alignment:
Q  337 tagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaat 436  Q
    ||||||| ||||| ||||||||||||| ||||||| |||||||||||| |||||||||||| || | ||||||  ||||||| |||||||||| ||||||    
T  23125924 tagtactactacaactgtgtctctgctggttaattatccatacaaggaatggttttcaaat-attctttcctagaacattaaccaaatcaagcaacaaat 23125826  T
Q  437 cattggtgattggtcaagcttcagtaacgactctttgctgtgctg 481  Q
    |||||||||||| |||||||||   |||||||||||| |||||||    
T  23125825 cattggtgattgatcaagcttctacaacgactctttgatgtgctg 23125781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 137 - 486
Target Start/End: Complemental strand, 25807566 - 25807225
Alignment:
Q  137 agagtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagaga 236  Q
    ||||||| ||||||||||  ||||| |||||||| ||| ||||||||| |||  | | || ||||||| ||||| ||||| ||||||||||||||| ||     
T  25807566 agagtctaaagtgaagaatttgaaa-tcagttaa-ttgattatttgaagacacaattgtgtagaaggaatagaaaactggggcaacgactatttcaaagg 25807469  T
Q  237 aattagaaggcattggatgtttatccactgaagaaggtca-agaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgc 335  Q
    |       |||||||||| |||||||||||||||||| || || ||||  |||| | || || ||||||||| ||||||||||| ||  |||  ||| ||    
T  25807468 a-------ggcattggatatttatccactgaagaaggacagagcaaggataatagtacaattgtacaaccactactccactactccaacatttcctgagc 25807376  T
Q  336 ctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaa 435  Q
     ||||| || |||| |||||| ||  || |||||||||| | |||| || ||  ||||||||||| |||||||| |||||||| |||||||||  | | |    
T  25807375 atagtattgttacaactgtgtgtcaactggttaattctcgacacaacgaatgaatttcaaattattccttcctaggacattaaccaaatcaagtaaaaga 25807276  T
Q  436 tcattggtgattggtcaagcttcagtaacgactctttgctgtgctgacacc 486  Q
    |||||||||||||  ||||||||| ||||||||||||| |||| |||||||    
T  25807275 tcattggtgattgaacaagcttcaataacgactctttgatgtgttgacacc 25807225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 23126275 - 23126128
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  ||||||  ||||||||| | ||||||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||    
T  23126275 ctaaaatttataagtcttaaaacaagatattggttctgatagaacaattgagagcaaaagaatttacaagggaagcttagttgcaattctgagtctgaag 23126176  T
Q  101 aattcagagtctgaagaccatcagaagttgatagttagagtctgaagt 148  Q
       ||| ||| ||||||| |||||||| |||| || ||||||||||||    
T  23126175 gcatcaaagtttgaagacaatcagaagctgattgtcagagtctgaagt 23126128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 1878035 - 1878151
Alignment:
Q  2 taaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaaga 101  Q
    |||||||||||||||||  ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || || | |||| |    
T  1878035 taaaatttataagtcttaaaacaaagtattggttctgaaagaacaattgagagcaaaagaattttcaagagaagcttagttgcaagtcagaatttgaaaa 1878134  T
Q  102 attcagagtctgaagac 118  Q
    | |||||||||||||||    
T  1878135 agtcagagtctgaagac 1878151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 14114419 - 14114293
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||| ||  |||| |  |||||||||| |||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||    
T  14114419 ctaaaatttataagttttaaaacaggatattggttctagaagaacaattgagatcaaaagaattttcaagtgaagcttagttgcaagtctgagtctgaag 14114320  T
Q  101 aattcagagtctgaagaccatcagaag 127  Q
    |  | ||||||||||||||||| ||||    
T  14114319 acattagagtctgaagaccatcggaag 14114293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 14424069 - 14423943
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||| ||  |||| |  |||||||||| |||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||    
T  14424069 ctaaaatttataagttttaaaacaggatattggttctagaagaacaattgagatcaaaagaattttcaagtgaagcttagttgcaagtctgagtctgaag 14423970  T
Q  101 aattcagagtctgaagaccatcagaag 127  Q
    |  | ||||||||||||||||| ||||    
T  14423969 acattagagtctgaagaccatcggaag 14423943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 11572068 - 11572194
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  ||||||| ||||||| |  |||||||| ||||||||||||||||| |||||||||||||||| ||| || ||||||||||    
T  11572068 ctaaaatttataagtcttaaaacaaggtattggttatggaagaacaaatgagagcaaaagaatttacaagagaagcttagttgcaagtcagagtctgaag 11572167  T
Q  101 a-attcagagtctgaagaccatcagaag 127  Q
    | |||| |||| ||||||||||||||||    
T  11572168 acattc-gagtgtgaagaccatcagaag 11572194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 217 - 472
Target Start/End: Original strand, 18361629 - 18361878
Alignment:
Q  217 agcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaagaaaggtcaatactccacttatacaaccaccactccact 316  Q
    |||||| |||||||||||| |||||||||||||| |||| ||||||||| || |||  || |||||| ||||| | || || ||||||||| | ||||||    
T  18361629 agcaacaactatttcagaggaattagaaggcattagatgcttatccactaaa-aagcgcaggaaaggacaatagtacaattgtacaaccactattccact 18361727  T
Q  317 actacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacatt 416  Q
    |  |      ||  ||| | ||||||| |||||  |||||||  ||| || ||||||||| ||||||| ||| ||||||||||| || ||||| ||||||    
T  18361728 atca------tggttgcacgtagtactactacatttgtgtctacgctggtcaattctccaaacaaggaatggatttcaaattattccctcctaggacatt 18361821  T
Q  417 aatcaaatcaagctacaaatcattggtga-ttggtcaagcttcagtaacgactcttt 472  Q
    || |||||||||| ||| |||| | |||| ||| |||||||||||||||||||||||    
T  18361822 aaccaaatcaagcaacagatcactagtgatttgatcaagcttcagtaacgactcttt 18361878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 345 - 558
Target Start/End: Original strand, 11572380 - 11572592
Alignment:
Q  345 ctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtg 444  Q
    ||||| || ||||| |||| |||||||||| ||||||||| | ||||||||||||| || |||||  ||||||| || ||||||| |||||||| || ||    
T  11572380 ctacatctctgtctgtgctggttaattctcgatacaaggaatagttttcaaattattccctcctagtacattaaccatatcaagcaacaaatcaatgatg 11572479  T
Q  445 attggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcat 544  Q
    |||| |||||||||| |||||  |||||| |||| || ||||  | ||||| | | |||||||||||||| ||||  ||| ||| |||| || || | |     
T  11572480 attgatcaagcttcaataacgggtctttgatgtgttggcacctctacaacgtc-tctttcatacctctatataaagaaatgaagccttgaagattagtag 11572578  T
Q  545 agactctacaacat 558  Q
    ||||||||||||||    
T  11572579 agactctacaacat 11572592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 379 - 551
Target Start/End: Complemental strand, 9803117 - 9802946
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtg 478  Q
    |||||| ||||||||||||||| ||||| || ||||| || |||||||||| |||||||| || |||||| |||| ||||  ||||||||||||| ||||    
T  9803117 caaggaatggttttcaaattattccttcataggacatcaaccaaatcaagcgacaaatcaatgttgattgatcaatcttctctaacgactctttgatgtg 9803018  T
Q  479 ctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcatagactct 551  Q
    ||| ||||  | ||||| | |||||| ||||||||| |||| |||| |||| ||| || | |||| |||||||    
T  9803017 ctggcacctctacaacgtc-tttttcctacctctatataaaggaatgaagatttgaagatatgcagagactct 9802946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 379 - 551
Target Start/End: Complemental strand, 9805013 - 9804842
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtg 478  Q
    |||||| ||||||||||||||| ||||| || ||||| || |||||||||| |||||||| || |||||| |||| ||||  ||||||||||||| ||||    
T  9805013 caaggaatggttttcaaattattccttcataggacatcaaccaaatcaagcgacaaatcaatgttgattgatcaatcttctctaacgactctttgatgtg 9804914  T
Q  479 ctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcatagactct 551  Q
    ||||||||  | ||||  | |||||| ||||||||| |||| |||| |||| ||| || | |||| |||||||    
T  9804913 ctgacacctctacaacatc-tttttcctacctctatataaaggaatgaagatttgaagatatgcagagactct 9804842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 13172382 - 13172447
Alignment:
Q  200 aaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccact 265  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  13172382 aaggagtagaagcctggagcaacgactatttcagagtaattagaaggcattggatgcttatccact 13172447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 5035508 - 5035432
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| || ||  ||||| ||||| |||||||||| |||||||||||||||||||| ||||||||||||||    
T  5035508 ttgcagaaggaataaaagcctggaacaacgcctatttcagataaattagaaggcattggatgcttatccactgaaga 5035432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 379 - 551
Target Start/End: Complemental strand, 9762625 - 9762454
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtg 478  Q
    |||||| ||||||||||||||| ||||| || ||||| || |||||||||| |||||||| || |||||| |||| | ||  ||||||||||||| ||||    
T  9762625 caaggaatggttttcaaattattccttcataggacatcaaccaaatcaagcgacaaatcaatgttgattgatcaatcctctctaacgactctttgatgtg 9762526  T
Q  479 ctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcatagactct 551  Q
    ||| | ||  | ||||| | |||||| ||||||||| |||| |||| |||| ||| || | |||| |||||||    
T  9762525 ctggcgcctctacaacgtc-tttttcctacctctatataaaggaatgaagatttgaagatatgcagagactct 9762454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 270
Target Start/End: Original strand, 16104959 - 16105094
Alignment:
Q  135 ttagagtctgaagtgaagaacctgaaagtcagttaaatt-ggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcag 233  Q
    |||||||||||||| ||||||  ||| || ||||| ||| ||||||| ||| ||   |||||||||||||| || ||  |||||||||||||||||| |     
T  16104959 ttagagtctgaagtcaagaacacgaa-gttagttatatttggttattggaagacgcaagtttgcagaaggaatataagcctggagcaacgactattttat 16105057  T
Q  234 agaaattagaaggcattggatgtttatccactgaaga 270  Q
    || ||||||||||||||||||| ||||||| ||||||    
T  16105058 aggaattagaaggcattggatgcttatccattgaaga 16105094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 4550024 - 4549905
Alignment:
Q  3 aaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaagaa 102  Q
    |||||||||| |||||  | ||| | ||||||||| |||||||||  ||||||||||||||||||||| ||||||||||| ||| || |||||| ||| |    
T  4550024 aaaatttatatgtcttaaagcaaagtattggttctgaaagaacaaaagagagcaaaagaattttcaagggaagcttagttacaagtcagagtctcaagta 4549925  T
Q  103 ttcagagtctgaagaccatc 122  Q
     ||||| | || ||||||||    
T  4549924 atcagaatttgcagaccatc 4549905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 352 - 563
Target Start/End: Original strand, 15871271 - 15871481
Alignment:
Q  352 tgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtc 451  Q
    |||| |||| || |||||||||| |||||| || |  |||||||||||| || ||||| ||||||||||| ||||||| |||||||| || |||||| ||    
T  15871271 tgtgcctctactggttaattctctatacaaagaataattttcaaattattccctcctaggacattaatcatatcaagcaacaaatcaatgatgattgatc 15871370  T
Q  452 aagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcatagactct 551  Q
    ||||||    |||||||||||| |||| || ||||  | ||||  | | |||||||||||||| |||| ||||  ||||||| |  || | | |||||||    
T  15871371 aagcttttacaacgactctttgatgtgatggcacctctacaacatc-tctttcatacctctatataaaggaatggagacttgaatattagtagagactct 15871469  T
Q  552 acaacatgtaaa 563  Q
    ||||||| ||||    
T  15871470 acaacatttaaa 15871481  T

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Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 16307771 - 16307828
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||||    
T  16307771 ctggagcaacgactattttagatgaattagaaggcattggatgcttatccactgaaga 16307828  T

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Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 378 - 458
Target Start/End: Original strand, 10254541 - 10254621
Alignment:
Q  378 acaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttc 458  Q
    ||||||| ||||||||||||||| || || || |||||||| |||||||||| |||||||| || |||||| |||||||||    
T  10254541 acaaggaatggttttcaaattattccctcataggacattaaccaaatcaagcaacaaatcaatgttgattgatcaagcttc 10254621  T

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Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 9064218 - 9064275
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||||||||    
T  9064218 ctggagcaacgactatttatgaggaattagaaggcattgaatgcttatccactgaaga 9064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 3778358 - 3778446
Alignment:
Q  29 attggttctaaaagaacaattgagagcaaaa-gaattttcaagagaagcttagtttcaaatctgagtctgaagaattcagagtctgaag 116  Q
    ||||||||| |||||| |||| ||||||||| |||||||||||||||||  |||| ||| || || ||| ||||| |||||||||||||    
T  3778358 attggttctcaaagaataatttagagcaaaaagaattttcaagagaagccaagttgcaagtccgaatctaaagaagtcagagtctgaag 3778446  T

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Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 11015876 - 11015796
Alignment:
Q  404 ttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtgctgaca 484  Q
    |||||| |||||||| || ||||||| |||||||| || |||| | |||||||||  ||||||||||||| ||||||||||    
T  11015876 ttcctaggacattaaccatatcaagcaacaaatcaatgttgatcgatcaagcttctctaacgactctttgatgtgctgaca 11015796  T

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Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 264
Target Start/End: Original strand, 11572221 - 11572347
Alignment:
Q  136 tagagtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagag 235  Q
    ||||||||||||||||||||||||| || |||||||  | || |||||| |||  | | |||||||||| ||||| |||| ||||||   ||||||||||    
T  11572221 tagagtctgaagtgaagaacctgaa-gttagttaaacggatt-tttgaagacacaaatgtgcagaaggaatagaagactgaagcaacagatatttcagag 11572318  T
Q  236 aaattagaaggcattggatgtttatccac 264  Q
     ||||||||||||||| ||| ||| ||||    
T  11572319 gaattagaaggcattgtatgcttaaccac 11572347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 12222245 - 12222393
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    |||||||||||| |||||  || || | |||||||||  |||||||| | |||| ||| ||||||||||| |||| |||||| ||| || || | |||||    
T  12222245 ctaaaatttatatgtcttaaaaaaaagtattggttctggaagaacaagttagagaaaatgaattttcaagggaagattagttgcaagtcagaatttgaag 12222344  T
Q  101 aattcagagtctgaagaccat-cagaagttgatagttagagtctgaagt 148  Q
    || ||||||| ||||||| || || ||| |||  |||||||||||||||    
T  12222345 aagtcagagtttgaagactatccaaaagctgactgttagagtctgaagt 12222393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 16412108 - 16412061
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttat 260  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  16412108 ctggagcaacgactatttcagagaaattgaaaggcattggatgcttat 16412061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 473
Target Start/End: Original strand, 3779052 - 3779146
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttg 473  Q
    |||||| || |||||||||||| ||||| ||||| || || |||||||||| |||||||| || || ||| ||||| |||  |||||||||||||    
T  3779052 caaggaatgattttcaaattattccttcgtatgagatcaaccaaatcaagcaacaaatcaatgatgtttgatcaagtttctctaacgactctttg 3779146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 16422868 - 16422775
Alignment:
Q  29 attggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaagaattcagagtctgaagaccatca 123  Q
    ||||||||| ||||||||||| ||||||||| |||||||||| ||| ||| ||| | ||||  ||||| ||||  ||||||||| ||||||||||    
T  16422868 attggttctgaaagaacaattaagagcaaaataattttcaagggaatctttgttgc-aatcaaagtctcaagacatcagagtctaaagaccatca 16422775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 7487948 - 7488005
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||| ||||| ||||||| | || |||||||||||||| ||||||||||||||    
T  7487948 ctggagcaatgactaattcagaggattttgaaggcattggatgcttatccactgaaga 7488005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 14114166 - 14114101
Alignment:
Q  199 gaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccac 264  Q
    |||||| ||||| ||||||||||  |||||||||||  |||||||||||||| |||| ||||||||    
T  14114166 gaaggaatagaagactggagcaaaaactatttcagatgaattagaaggcattagatgcttatccac 14114101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 14423816 - 14423751
Alignment:
Q  199 gaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccac 264  Q
    |||||| ||||| ||||||||||  |||||||||||  |||||||||||||| |||| ||||||||    
T  14423816 gaaggaatagaagactggagcaaaaactatttcagatgaattagaaggcattagatgcttatccac 14423751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 15871121 - 15871190
Alignment:
Q  195 tgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccac 264  Q
    |||||||||| ||||| ||||||||||| | | |||| ||  ||||||||||||||||||| ||||||||    
T  15871121 tgcagaaggaatagaagactggagcaacaaatttttctgaagaattagaaggcattggatgcttatccac 15871190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18361412 - 18361468
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaa 57  Q
    ||||||||||||||||||  ||||| | |||||||||||||||||||  ||||||||    
T  18361412 ctaaaatttataagtcttgaaacaaagtattggttctaaaagaacaaaagagagcaa 18361468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 1878465 - 1878552
Alignment:
Q  386 tggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttg 473  Q
    ||||||||||||||| |  ||||| || ||||| || ||||||| |||||||| || |||||| |||||||||   ||||||||||||    
T  1878465 tggttttcaaattattctctcctacgatattaaccatatcaagcaacaaatcaatgttgattgatcaagcttctacaacgactctttg 1878552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 9396739 - 9396806
Alignment:
Q  51 agagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaagaattcagagtctgaagac 118  Q
    |||||||| ||||||||||| ||| ||||||| ||| |  || ||||||||| |||||||||||||||    
T  9396739 agagcaaaggaattttcaagggaaacttagttgcaagttagaatctgaagaagtcagagtctgaagac 9396806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9763035 - 9762968
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttca 68  Q
    ||||||||||||||||||  ||||| | ||| |||||| ||| |||||| |||||||| |||||||||    
T  9763035 ctaaaatttataagtcttaaaacaaagtatttgttctagaagtacaatttagagcaaaggaattttca 9762968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 472
Target Start/End: Original strand, 13172555 - 13172658
Alignment:
Q  370 ttctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtga-ttggtcaagcttcagtaacgact 468  Q
    ||||| ||||||||| ||| ||| ||||| | || ||||| |||| ||| |||||||| | ||| ||||||||||| ||| ||||||||||  |||||||    
T  13172555 ttctctatacaaggaatggatttgaaattgttccctcctaggacaataaccaaatcaaacaacatatcattggtgatttgatcaagcttcaacaacgact 13172654  T
Q  469 cttt 472  Q
    ||||    
T  13172655 cttt 13172658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 2501095 - 2501161
Alignment:
Q  198 agaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccac 264  Q
    ||||||| ||||| ||||||||||||| |||||| ||  ||||||||||||||| ||  ||||||||    
T  2501095 agaaggaatagaagactggagcaacgaatatttctgaagaattagaaggcattgaattcttatccac 2501161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15870892 - 15871009
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    |||| |||||||||||||  ||||| | ||| |||||  ||| |||| | |||||||| |||||| |||| ||||||||||| ||| || |||||| |||    
T  15870892 ctaatatttataagtcttaaaacaaagtatttgttctggaagtacaaattagagcaaaggaatttacaagggaagcttagttgcaagtcagagtctaaag 15870991  T
Q  101 aattcagagtctgaagac 118  Q
       ||||||| |||||||    
T  15870992 gcatcagagtgtgaagac 15871009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 7e-36; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 7 - 485
Target Start/End: Original strand, 20237192 - 20237675
Alignment:
Q  7 tttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaagaat-tc 105  Q
    ||||||||||||| ||||| | |||||||||  |||||||| |||||||||| || |||| || |||||||| ||| ||| ||||||||||||||   ||    
T  20237192 tttataagtctttaaacaaagtattggttctggaagaacaaatgagagcaaaggatttttaaaaagaagctt-gttgcaagtctgagtctgaagaccatc 20237290  T
Q  106 agagtctgaagaccatcagaagttgatagttagagtctgaagtga---agaacctgaaagtcagttaaattg-----gttat-----ttgaatacatgag 192  Q
    |||||||||||| ||||||||| |||  |  |||||||||||| |   |||  ||||| ||||   |||| |     |||||     ||||| |||| ||    
T  20237291 agagtctgaagaacatcagaagctgactgcgagagtctgaagtcacccagagtctgaa-gtcaagaaaatggagttagttatatttattgaagacataag 20237389  T
Q  193 tttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaagaaa--ggtcaatac 290  Q
    |||||| ||||| |||||  || |||||||||||||||||||| |||||||||||||| |||| |||||| || || ||| | | ||||  || |||||     
T  20237390 tttgcaaaaggaatagaagccttgagcaacgactatttcagaggaattagaaggcatttgatgcttatcctctaaa-aagctgaggaaatcggacaata- 20237487  T
Q  291 tccacttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggtt 390  Q
           |||||||||  ||||||||||| ||||  |||||||   ||||||||||| || ||||| |  ||| ||| |||||||||||||||| ||  |    
T  20237488 -------atacaaccattactccactactccactcatgtctgcatatagtactgctatagttgtgtttgcgctggttgattctccatacaaggaatgaat 20237580  T
Q  391 ttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactc-tttgctgtgctgacac 485  Q
    |||||||||| || ||||| || ||||| |||||||||| ||||||||||||||| || |||||||||||||||||||| |||| |||||||||||    
T  20237581 ttcaaattattccctcctaggatattaaccaaatcaagcaacaaatcattggtga-tgttcaagcttcagtaacgactcttttgatgtgctgacac 20237675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 160 - 458
Target Start/End: Original strand, 27276118 - 27276419
Alignment:
Q  160 aagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgttta 259  Q
    |||| |||||| ||||| ||||||| ||||  || |||||||||| |||||   || | |||| | |||||||||| ||||||||||||||| ||| |||    
T  27276118 aagttagttaatttggtcatttgaagacatatgtatgcagaaggaatagaagcgtgaaacaacaattatttcagaggaattagaaggcattgaatgctta 27276217  T
Q  260 tccactgaagaaggt-ca-agaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgcctagtact-gctacagctgtgt 356  Q
    |||||||||||| |  || ||||||| ||||| | || || |||||||||  |||||||||| | | ||||||||||  ||||||  ||||||  |||||    
T  27276218 tccactgaagaatgcacagagaaaggacaatagtacaattgtacaaccacttctccactactcctccattgtctgcgaatagtacaagctacaattgtgt 27276317  T
Q  357 ctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagct 456  Q
    ||||||| |||||||||||| ||||||| ||  || ||||||||||| | ||| ||||||||  ||||||||| ||||| |||||||||||| ||| |||    
T  27276318 ctctgctggttaattctccaaacaaggaatgtattacaaattatacccttctaagacattaactaaatcaagcaacaaaccattggtgattgatcacgct 27276417  T
Q  457 tc 458  Q
    ||    
T  27276418 tc 27276419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 195 - 478
Target Start/End: Original strand, 17262742 - 17263020
Alignment:
Q  195 tgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaag-aaaggtcaatactcc 293  Q
    |||| ||||| |||||  ||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||  | || | ||||| ||||| | |    
T  17262742 tgcaaaaggaatagaagcctggagcaatgactatttcagaggaatgagaaggcattggatgcttatccactgaagagcg-caggtaaaggacaatagtac 17262840  T
Q  294 acttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttc 393  Q
    | || ||||||||| ||||||||      ||  |||||||   |||||||||||||| |||||||    |  ||||||||||| ||||||| | | ||||    
T  17262841 aattgtacaaccactactccact------ctcatgtctgcatatagtactgctacagttgtgtctacattgattaattctccaaacaaggaattgatttc 17262934  T
Q  394 aaattataccttcctatgacattaatcaaatcaagctacaaatcattggtga-ttggtcaagcttcagtaacgactctttgctgtg 478  Q
    |||||||  ||||| | |||||||| |||||||||| ||| ||||||||||| ||| |||||||||||||| ||| ||||| ||||    
T  17262935 aaattatttcttccaaggacattaaccaaatcaagcaacagatcattggtgatttgatcaagcttcagtaatgacactttgatgtg 17263020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 337 - 529
Target Start/End: Complemental strand, 34637547 - 34637356
Alignment:
Q  337 tagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaat 436  Q
    ||||||||||||| || ||||||| || ||||||||| |||||||  | ||| ||| ||| ||| || ||||| |||||||| |||||||||| ||| ||    
T  34637547 tagtactgctacaactatgtctctactggttaattctgcatacaataaatggattttaaactattccctcctaagacattaaccaaatcaagcaacagat 34637448  T
Q  437 cattggtgattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaaga 529  Q
    ||||||   ||| |||||||||||||||||||||||| || | |||||||  | ||||| | | |||||||||||||| |||| |||| ||||    
T  34637447 cattggcatttgatcaagcttcagtaacgactctttgatgcgatgacacctctacaacgtc-tctttcatacctctatataaaggaatgaaga 34637356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 337 - 473
Target Start/End: Original strand, 22586146 - 22586283
Alignment:
Q  337 tagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaat 436  Q
    ||||||||||| || |||||||  | | |||||||||||| ||||||| ||  ||||||||||  || |||||  ||||||| |||||||||| ||| ||    
T  22586146 tagtactgctatagatgtgtctacgttggttaattctccaaacaaggaatgaatttcaaattactccctcctagaacattaaacaaatcaagcaacagat 22586245  T
Q  437 cattggtga-ttggtcaagcttcagtaacgactctttg 473  Q
    ||||||||| ||| |||||||||| |||||||||||||    
T  22586246 cattggtgatttgatcaagcttcattaacgactctttg 22586283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 352 - 446
Target Start/End: Original strand, 26055697 - 26055791
Alignment:
Q  352 tgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgat 446  Q
    ||||||| || | |||||||||||||||||||| ||||||||||||| | || ||||| |||||||| |||||||||| | | ||||||||||||    
T  26055697 tgtgtctatgttggttaattctccatacaaggaatggttttcaaatttttccgtcctaggacattaaccaaatcaagcaatagatcattggtgat 26055791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 23589827 - 23589770
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  23589827 ctggagcaacgactatttcagaggaattagaaggcattggatggttatccactaaaga 23589770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 26119852 - 26119909
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||    
T  26119852 ctggagcaacgactattttagaggaattagaaggcattggatgcttatccactgaaga 26119909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 27057448 - 27057372
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| || || ||| |||||| ||||||||||||| |||||||||||||||||||  |||||||||||||    
T  27057448 ttgcagaaggaataaaagactagagcaatgactatttcagaggaattagaaggcattggatgactatccactgaaga 27057372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 39798890 - 39798966
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| || ||  |||||||||||||||||||||||||||||||| |||||||||| |||| |||| ||||    
T  39798890 ttgcagaaggaataaaaggctggagcaacgactatttcagagaaattagaaagcattggatgcttattcacttaaga 39798966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 405 - 483
Target Start/End: Complemental strand, 24021638 - 24021559
Alignment:
Q  405 tcctatgacattaatcaaatcaagctacaaatcattggtgattgg-tcaagcttcagtaacgactctttgctgtgctgac 483  Q
    ||||| |||||||| ||||||||||  || ||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  24021638 tcctaggacattaaccaaatcaagcatcagatcattggtgatttgatcaagcttcagtaacgactctttgatgtgctgac 24021559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 26118403 - 26118514
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    |||||||||||| |||||  ||||| | |||||||||  |||||||||| ||||||||||||||||||||| ||||  |||| ||| ||  | |||||||    
T  26118403 ctaaaatttatatgtcttaaaacaaagtattggttctggaagaacaatttagagcaaaagaattttcaagaaaagccaagttgcaagtcataatctgaag 26118502  T
Q  101 aattcagagtct 112  Q
    || |||||||||    
T  26118503 aagtcagagtct 26118514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 34637652 - 34637578
Alignment:
Q  191 agtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccact 265  Q
    |||||||||||||| |||||| || |||| |||||||||| |||| ||||| ||||||||||||| |||||||||    
T  34637652 agtttgcagaaggaatagaatcctagagcgacgactattttagaggaattaaaaggcattggatgcttatccact 34637578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 34638583 - 34638505
Alignment:
Q  192 gtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||| ||||| | |||  ||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||    
T  34638583 gtttgcataaggaatggaagcctggagcaacggctaattcagaggaatttgaaggcattggatgtttatccactgaaga 34638505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 473
Target Start/End: Original strand, 26118811 - 26118905
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttg 473  Q
    |||||| ||||||| ||||| | | |||||| ||||| ||||||||||||| |||||||| || |||||| |||||||||  |||||| ||||||    
T  26118811 caaggaatggttttgaaatttttctttcctaggacatcaatcaaatcaagcaacaaatcaatgttgattgatcaagcttctctaacgaatctttg 26118905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 20567936 - 20567863
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactga 267  Q
    ||||||||||| |  ||| ||||||||||||||| ||||||| |||| |||||||||||||| ||||| |||||    
T  20567936 ttgcagaaggaatgcaatcctggagcaacgactacttcagaggaatttgaaggcattggatgcttatcgactga 20567863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 31589021 - 31589098
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaa 271  Q
    ||||||||||| |||||  ||||||||||  ||| ||||||| ||||| |||||||||||||  ||||||||||||||    
T  31589021 ttgcagaaggaatagaagcctggagcaacagctaattcagaggaattaaaaggcattggatgcgtatccactgaagaa 31589098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 34639032 - 34638983
Alignment:
Q  30 ttggttctaaaagaacaattgagagcaaaagaattttcaagagaagctta 79  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||| ||||    
T  34639032 ttggttctgaaagaataattgagagcaaaagaattttcaagggaaactta 34638983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 13692551 - 13692475
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| |||||  || |||||| |||||||| |||| ||||||||| ||||| ||| |||||||| |||||    
T  13692551 ttgcagaaggaatagaagcctcgagcaatgactattttagaggaattagaagacattgaatgcttatccacagaaga 13692475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 20969305 - 20969254
Alignment:
Q  219 caacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||||| |||| |||||||| |||||||||| ||||||||| ||||    
T  20969305 caacgactatttaagaggaattagaaagcattggatgcttatccacttaaga 20969254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 18672492 - 18672546
Alignment:
Q  3 aaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaa 57  Q
    ||||||||||||||||| |  |||| ||||||||| ||||||||| |||||||||    
T  18672492 aaaatttataagtctttaattaaggaattggttctgaaagaacaaatgagagcaa 18672546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 22586011 - 22586085
Alignment:
Q  196 gcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||| |||||  |||||||||||||||||| |||  | | ||||||||||| ||| ||||||||| ||||    
T  22586011 gcagaaggaatagaagcctggagcaacgactattttagaagactaagaaggcattgaatgcttatccactaaaga 22586085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 370 - 472
Target Start/End: Original strand, 39799059 - 39799160
Alignment:
Q  370 ttctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactc 469  Q
    ||||||| ||||||| ||  ||||||||| | || ||||| |||| ||| ||||| |||| ||| ||||||||||| || ||||||||||  ||||||||    
T  39799059 ttctccaaacaaggaatgaatttcaaattgttccctcctaagacaataaccaaattaagcaacagatcattggtga-tgatcaagcttcaacaacgactc 39799157  T
Q  470 ttt 472  Q
    |||    
T  39799158 ttt 39799160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 137 - 472
Target Start/End: Complemental strand, 4463 - 4127
Alignment:
Q  137 agagtctgaagtgaagaacctgaaagtcagttaaa-ttggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagag 235  Q
    |||||||||||| ||||| ||| | || ||||||| ||||||||||||| |||  || || |||||||| || ||  |||||||||||||||||||||||    
T  4463 agagtctgaagtcaagaagctgga-gttagttaaagttggttatttgaaaacacaagatttcagaaggaataaaagcctggagcaacgactatttcagag 4365  T
Q  236 aaattagaaggcattggatgtttatccactgaagaaggtcaag-aaaggtcaatactccacttatacaaccaccactccactact--acactattgtctg 332  Q
     |||||||||||||| |||| ||||||||||||||| | || | ||| | ||||| | || || ||||||||| |||||||||||  || || || ||||    
T  4364 gaattagaaggcatttgatgcttatccactgaagaacg-caggaaaatgacaatagtacaattgtacaaccactactccactactccactctcttatctg 4266  T
Q  333 cgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctac 432  Q
    |   |||||||| || || ||||||| |||| |||||||||||| ||||||| ||| ||||| ||||| || ||||| ||| |||| ||||| |||| ||    
T  4265 catatagtactgttatagttgtgtctatgctggttaattctccaaacaaggaatggatttcagattattccctcctaggactttaaacaaataaagcaac 4166  T
Q  433 aaatcattggtgattggtcaagcttcagtaacgactcttt 472  Q
    |  |||||||||| || ||||||||||  || ||||||||    
T  4165 aggtcattggtga-tgatcaagcttcaacaatgactcttt 4127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 4635 - 4534
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagctta-gtttcaaatctgagtctgaa 99  Q
    ||||||||||||||||||  ||||||| ||||||||| ||| ||||| |||||||||  ||| || |||  |||||||| ||| ||| ||||| ||||||    
T  4635 ctaaaatttataagtcttaaaacaaggtattggttctgaaaaaacaaatgagagcaatggaaattacaaaggaagcttatgttgcaagtctgaatctgaa 4536  T
Q  100 ga 101  Q
    ||    
T  4535 ga 4534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 3e-35; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 193 - 456
Target Start/End: Original strand, 17812275 - 17812532
Alignment:
Q  193 tttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtca-agaaaggtcaatact 291  Q
    |||||||||| | |||||   |||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||| ||  || ||||||| ||||| |    
T  17812275 tttgcagaagaaatagaagtttggagcaacggctatttcagaggaattagaaggcattggatgcttatccgctgaaggagaacagagaaaggacaatagt 17812374  T
Q  292 ccacttatacaaccaccactccactactacactattgtctgcgcctagtact-gctacagctgtgtctctgctcgttaattctccatacaaggagtggtt 390  Q
      | || ||||||||| |||||||||        |||||||||| ||||||  ||||||| |||||||||||| |||||||||||||||||||| |||||    
T  17812375 aaagttgtacaaccactactccacta--------ttgtctgcgcatagtacaagctacagttgtgtctctgctggttaattctccatacaaggaatggtt 17812466  T
Q  391 ttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagct 456  Q
    ||||||||||  |||| || || ||||| |||||||| | |   |||||||||||||| |||||||    
T  17812467 ttcaaattatttcttcataagatattaaccaaatcaaacaattgatcattggtgattgatcaagct 17812532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 191 - 472
Target Start/End: Complemental strand, 18394668 - 18394386
Alignment:
Q  191 agtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtca-agaaaggtc-aat 288  Q
    |||||||| ||||| |||||  ||||||||||||| ||||||||| ||||| |||||||| || | ||||||||||||| ||  || ||||||| | |||    
T  18394668 agtttgcataaggaatagaagtctggagcaacgaccatttcagaggaattataaggcatttgaggcttatccactgaaggagcgcagagaaaggacaaat 18394569  T
Q  289 actccacttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtgg 388  Q
    | | || || ||||||||| ||||||  ||| ||||  |||||| || ||||||| |||||| |||| ||||| | |||||||||||||||||||| ||     
T  18394568 agtacaattgtacaaccactactccatgactccactcatgtctgtgcatagtactactacagttgtgcctctgttggttaattctccatacaaggaatga 18394469  T
Q  389 ttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactcttt 472  Q
     |||||||||||  | || |  ||||  || |||||||||| ||||||||||  ||| || ||||||||||  |||||||||||    
T  18394468 atttcaaattatttcctcatgggacacaaaccaaatcaagcaacaaatcattattga-tgatcaagcttcaacaacgactcttt 18394386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 353 - 458
Target Start/End: Original strand, 17526530 - 17526635
Alignment:
Q  353 gtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtca 452  Q
    |||| |||||| |||||||||||||||||||| |||||||||||||||||| ||||| |||||||| || ||||||| |||||||| || |||||| |||    
T  17526530 gtgtttctgctggttaattctccatacaaggaatggttttcaaattataccctcctaggacattaaccatatcaagcaacaaatcaatgttgattgatca 17526629  T
Q  453 agcttc 458  Q
    ||||||    
T  17526630 agcttc 17526635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 17526231 - 17526362
Alignment:
Q  29 attggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaagaattcagagtctgaagaccatcagaagt 128  Q
    |||||||||  |||||||| ||||||||||    ||| |||||||||||||||| ||| || |||||||||||  ||||||| ||||| ||||||||||     
T  17526231 attggttctggaagaacaaatgagagcaaatttttttacaagagaagcttagttgcaagtcagagtctgaagacatcagagtttgaaggccatcagaagc 17526330  T
Q  129 tgatagttagagtctgaagtgaagaacctgaa 160  Q
    |||| || ||||||||||||||||||||||||    
T  17526331 tgattgtcagagtctgaagtgaagaacctgaa 17526362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 379 - 555
Target Start/End: Complemental strand, 23087628 - 23087453
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtg 478  Q
    |||||| || |||||||||||| |||||||| |||||||| || ||||||| |||||||| || |||||| |||||||||  ||||||||||||| ||||    
T  23087628 caaggaatgattttcaaattattccttcctaggacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttctctaacgactctttgatgtg 23087529  T
Q  479 ctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcatagactctacaa 555  Q
     |||||||  | ||||| | | ||| |||||||||| |||| |||| |||||||| || || | | |||||||||||    
T  23087528 ttgacacctctacaacgtc-tctttgatacctctatataaaggaatgaagacttgaagattagtagagactctacaa 23087453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 13027909 - 13027833
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| | |||  ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  13027909 ttgcagaaggaatggaagcctggagcaacggctatttcagaggaattagaaggcattggatgcttatccactgaaga 13027833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 347 - 558
Target Start/End: Complemental strand, 18474001 - 18473791
Alignment:
Q  347 acagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtga- 445  Q
    ||||||||||||  ||  |||||||||| | ||||||| ||  ||||||||||| || || || |||||| | |||||||||  ||| |||||||||||     
T  18474001 acagctgtgtctacgccggttaattctctaaacaaggaatgtatttcaaattattccctcataggacattgaccaaatcaagtaacagatcattggtgat 18473902  T
Q  446 ttggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcata 545  Q
    ||| |||||||||||||||||||||||| | ||||| || | |  ||||| | ||||||| |||||||| ||||||| |||| ||||| || |||  | |    
T  18473901 ttgatcaagcttcagtaacgactctttgatttgctggcaac-tctcaacgtc-tttttcacacctctatataaaagagtaaatacttgaagatttataga 18473804  T
Q  546 gactctacaacat 558  Q
    |||||||||||||    
T  18473803 gactctacaacat 18473791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 20570985 - 20571057
Alignment:
Q  198 agaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||| |||||  ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  20570985 agaaggaatagaagtctggagcaacgactatttcagaggaattagaaggcatttgatgcttatccactgaaga 20571057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 152 - 481
Target Start/End: Complemental strand, 20577457 - 20577127
Alignment:
Q  152 gaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattg 251  Q
    |||||||||||||| || | || ||| |||||| |||  ||| |||||||| | |||||  ||| ||||| | |||||||||||||||||||||||||||    
T  20577457 gaacctgaaagtcaatttattttgttttttgaagacacaagtctgcagaagaaatagaagcctgaagcaatggctatttcagagaaattagaaggcattg 20577358  T
Q  252 gatgtttatccactgaagaaggtcaagaaaggtcaatactccacttatacaaccaccactccactact--acactattgtctgcgcctagtactgctaca 349  Q
    |||  ||||||| ||||||  |     || ||  |||| | || ||  |||||||| |||||||||||  || || |||| ||| | ||||| ||  |||    
T  20577357 gattcttatccaatgaagagtgcggtaaatgggaaatagtacaattgcacaaccactactccactactccactctcttgtatgcacatagtaatgtcaca 20577258  T
Q  350 gctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattgg 449  Q
     |||||||   ||| |||| ||||||| |||| || ||| ||||||||||| || |||||  ||||||| |||||||||| | | ||||||||||| ||     
T  20577257 actgtgtccacgctggttatttctccaaacaatgaatggatttcaaattattccctcctagaacattaaccaaatcaagcaatatatcattggtga-tga 20577159  T
Q  450 tcaagcttcagtaacgactctttgctgtgctg 481  Q
    |||||||||  ||| ||||||| | |||||||    
T  20577158 tcaagcttctataaagactcttggatgtgctg 20577127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 379 - 558
Target Start/End: Complemental strand, 24619589 - 24619411
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtg 478  Q
    |||||| ||||||||||||||| |  ||||| ||| |||| || ||||||| |||||||| || |||||| |||||||||   |||||||||||| ||||    
T  24619589 caaggaatggttttcaaattattcactcctaggacgttaaccatatcaagcaacaaatcaatgttgattgatcaagcttctccaacgactctttgttgtg 24619490  T
Q  479 ctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttttgcatagactctacaacat 558  Q
     ||| |||  | ||||| | | |||||||||||||| |||| |||| |||||||| || || |   ||||||||||||||    
T  24619489 ttgaaacctctacaacgtc-tctttcatacctctatataaatgaatgaagacttgaagattagtggagactctacaacat 24619411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 2651909 - 2651853
Alignment:
Q  214 tggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  2651909 tggagtaacgactatttcagaggaattagaaggcattgaatgcttatccactgaaga 2651853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 14357113 - 14357189
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||| ||||| |||||  ||||||||| | ||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  14357113 ttgcaaaaggaatagaagcctggagcaatgtctatttcagaggaattagaaggcattggatggttatccactaaaga 14357189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 379 - 458
Target Start/End: Original strand, 10328550 - 10328629
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttc 458  Q
    |||||| ||||||||||||||| |||| ||| |||||||| |||||||||| |||||| | || |||||| |||||||||    
T  10328550 caaggaatggttttcaaattattccttactaggacattaaccaaatcaagcaacaaattaatgatgattgatcaagcttc 10328629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 17812122 - 17812222
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  ||||| | |||||||||  |||| ||||||||||||| | ||||| ||||||||| || ||| ||| ||  |||||||||    
T  17812122 ctaaaatttataagtcttaaaacaatgtattggttctggaagagcaattgagagcaacataatttacaagagaagttttgttgcaagtcatagtctgaag 17812221  T
Q  101 a 101  Q
    |    
T  17812222 a 17812222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 16324523 - 16324574
Alignment:
Q  219 caacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||    
T  16324523 caacgactatttcagaggaattagaaggcattgtatgcttatccattgaaga 16324574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 14902441 - 14902517
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| |||||   ||||||||||||||||| |||| |||||||||||| || ||| || |||||| ||||    
T  14902441 ttgcagaaggaatagaagcttggagcaacgactattttagaggaattagaaggcagtgaatgcttctccactaaaga 14902517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 346 - 481
Target Start/End: Original strand, 2447 - 2582
Alignment:
Q  346 tacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtga 445  Q
    ||||| |||||||||||| ||||||||| |||||||||| || |||||||||||| |  ||||| ||||||| ||||||||||| ||| |||||||||||    
T  2447 tacagttgtgtctctgctggttaattcttcatacaaggaatgattttcaaattattctctcctaggacattactcaaatcaagcaacatatcattggtga 2546  T
Q  446 ttggtcaagcttcagtaacgactctttgctgtgctg 481  Q
    ||| |||||||| ||||||||||||||| |||||||    
T  2547 ttgatcaagctttagtaacgactctttgatgtgctg 2582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 2339 - 2444
Alignment:
Q  199 gaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtca-agaaaggtcaatactccactt 297  Q
    |||||| || || |||| |||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||| | || ||||||| ||||| | || ||    
T  2339 gaaggaatataagactgaagcaacgactattttagaggaattagaaggcattggatgcttacccactgaagaatgacagagaaaggacaatagtacaatt 2438  T
Q  298 atacaa 303  Q
    ||||||    
T  2439 atacaa 2444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 346 - 481
Target Start/End: Original strand, 16507 - 16642
Alignment:
Q  346 tacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtga 445  Q
    ||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||  |  ||||| ||||||| ||||||||||| ||| |||||||||||    
T  16507 tacagttgtgtctctgctggttaattcttcatacaaggaatggttttcaaattactctctcctaggacattactcaaatcaagcaacatatcattggtga 16606  T
Q  446 ttggtcaagcttcagtaacgactctttgctgtgctg 481  Q
    ||| |||||||| ||||||||||||||| |||||||    
T  16607 ttgatcaagctttagtaacgactctttgatgtgctg 16642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 16400 - 16471
Alignment:
Q  200 aaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaa 271  Q
    ||||| ||||| |||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  16400 aaggaatagaagactgaagcaacgactattttagagaaattagaaggcattggatgcttacccactgaagaa 16471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 248 - 472
Target Start/End: Complemental strand, 1526 - 1301
Alignment:
Q  248 attggatgtttatccactgaagaaggtcaa-gaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgcctagtactgct 346  Q
    |||||||| ||||||| ||||||| ||||  |||||| ||||| | || || ||||||||| ||||||||||| ||||||||||||||| |||| || ||    
T  1526 attggatgcttatccattgaagaatgtcagtgaaaggacaatagtacaattgtacaaccacaactccactactccactattgtctgcgcgtagtgctact 1427  T
Q  347 acagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgat 446  Q
    |||||| | |||| | | |||||||||||||||||||| ||  ||||| ||||| |||||||| || ||||| |||||||||  |||||||||| |||||    
T  1426 acagctatctctcggttagttaattctccatacaaggaatgaatttcatattattccttcctaggaaattaaccaaatcaaggaacaaatcatttgtgat 1327  T
Q  447 tggtcaagcttcagtaacgactcttt 472  Q
    ||   |||||||   |||||||||||    
T  1326 tgagaaagcttctacaacgactcttt 1301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 429
Target Start/End: Original strand, 416023 - 416252
Alignment:
Q  193 tttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaagaaaggtcaatactc 292  Q
    |||| ||||||| |||||  |||||||||||||||||||| |  ||||||||||||||||| | ||||| ||| |||| |  || |||||| ||||| |     
T  416023 tttgaagaaggaatagaagcctggagcaacgactatttcaaatgaattagaaggcattggacggttatctactaaaga-gcacatgaaaggacaatagt- 416120  T
Q  293 cacttatacaaccaccactccactactacactat--tgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggtt 390  Q
           |||||||| ||||||||  | ||||||  || |||| | |||||||||||||| |||||||  ||| |||||||||||| ||||||| ||  |    
T  416121 -------acaaccactactccacttttccactatgttggctgcacatagtactgctacagatgtgtctaagctggttaattctccaaacaaggaatgaat 416213  T
Q  391 ttcaaattataccttcctatgacattaatcaaatcaagc 429  Q
    |||||||| | || ||||| |||||||| ||||||||||    
T  416214 ttcaaattgttccctcctaagacattaaccaaatcaagc 416252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 820 - 773
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttat 260  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  820 ctggagcaacgactatttcagagaaattgaaaggcattggatgcttat 773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 11580 - 11487
Alignment:
Q  29 attggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaagaattcagagtctgaagaccatca 123  Q
    ||||||||| ||||||||||| ||||||||| |||||||||| ||| ||| ||| | ||||  ||||| ||||  ||||||||| ||||||||||    
T  11580 attggttctgaaagaacaattaagagcaaaataattttcaagggaatctttgttgc-aatcaaagtctcaagacatcagagtctaaagaccatca 11487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 139 - 307
Target Start/End: Original strand, 18026724 - 18026892
Alignment:
Q  139 agtctgaagtgaagaacctgaaagtcagttaaattggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaa 238  Q
    |||||||||| ||||| ||||| || | |||||||||||||||||| ||   ||||||||||||||||||||  |||||||||| |||||||||||| ||    
T  18026724 agtctgaagtaaagaatctgaa-gttaattaaattggttatttgaagactaaagtttgcagaaggagtagaagcctggagcaacaactatttcagaggaa 18026822  T
Q  239 ttagaaggcattggatgtttatccactgaagaaggtc-aagaaaggtcaatactccacttatacaaccac 307  Q
    ||||||||||||||||| |||||||||||||| || | |||||||| ||||| | || || |||||||||    
T  18026823 ttagaaggcattggatgcttatccactgaagatggacaaagaaaggacaatagtacaattgtacaaccac 18026892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 172 - 473
Target Start/End: Complemental strand, 26185870 - 26185567
Alignment:
Q  172 ttggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaa 271  Q
    ||||||||||||| ||| | | || || ||||| |||||  ||||| ||||| ||||||||||  |||||||||||||| |||| ||||||||| ||||     
T  26185870 ttggttatttgaagacacgtgattacaaaaggaatagaaatctggaacaacggctatttcagatgaattagaaggcattagatgcttatccactaaagag 26185771  T
Q  272 ggtcaagaaaggtcaatactccacttatacaaccaccactccactactacactat--tgtctgcgcctagtactgctacagctgtgtctctgctcgttaa 369  Q
     |   | ||||| ||||| | || || ||||||||| | ||||||| | |||||   ||||||| | || |||||||| || |||||||  ||| |||||    
T  26185770 tgcagaaaaaggacaatagtaca-ttgtacaaccactattccactattccactaccatgtctgcacataatactgctatagttgtgtctacgctggttaa 26185672  T
Q  370 ttctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtga-ttggtcaagcttcagtaacgact 468  Q
    ||||||| ||||| | | | |||||||||||  | ||||| |||||||| |||||||||| ||| ||||||||||| ||| |||||||||| ||||||||    
T  26185671 ttctccaaacaagtaattgatttcaaattatttcctcctaggacattaaccaaatcaagcaacagatcattggtgatttgatcaagcttcaataacgact 26185572  T
Q  469 ctttg 473  Q
    |||||    
T  26185571 ctttg 26185567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 20462278 - 20462152
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaag 100  Q
    ||||||||||||||||||  || |||| ||| |||||  |||||||| |||||| |||||||||| |||| ||||||||||| ||| |||||||||||||    
T  20462278 ctaaaatttataagtcttaaaagaaggtatttgttctggaagaacaaatgagagaaaaagaatttacaagggaagcttagttgcaagtctgagtctgaag 20462179  T
Q  101 aattcagagtctgaagaccatcagaag 127  Q
    |  ||| ||||||||||||||||||||    
T  20462178 acatcaaagtctgaagaccatcagaag 20462152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 344 - 558
Target Start/End: Original strand, 15477948 - 15478165
Alignment:
Q  344 gctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattataccttcctatgacattaa----tcaaatcaagctacaaatcat 439  Q
    |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||     || ||||||| ||||||||     
T  15477948 gctacaactgtgtctctgctggttaattctccatacaaggaatggttttcaaattattccctcctatgacattaaccatgcatatcaagcaacaaatcaa 15478047  T
Q  440 tggtgattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaagaataaagacttgtagttt 539  Q
    || |||||| |||||||||   ||||| |||||| |||| || ||||  | ||||  | | |||||||||||||| |||| |||| |||||||| || ||    
T  15478048 tgatgattgatcaagcttctacaacgaatctttgatgtgttggcacctctacaacatc-tctttcatacctctatataaaggaatgaagacttgaagatt 15478146  T
Q  540 tgcatagactctacaacat 558  Q
     | |  |||||||||||||    
T  15478147 agaagtgactctacaacat 15478165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 15477595 - 15477741
Alignment:
Q  2 taaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaaga 101  Q
    |||||||||||||||||  ||||| | |||||||||  |||||||| | ||| |||| |||||||||||||||||||| || ||| || |||||||||||    
T  15477595 taaaatttataagtcttaaaacaaagtattggttctggaagaacaagttagaacaaaggaattttcaagagaagcttatttgcaagtcagagtctgaaga 15477694  T
Q  102 attcagagtctgaagaccatcagaagttgatagttagagtctgaagt 148  Q
    | | | |||||||||||||||| ||| |||  || ||||||||||||    
T  15477695 aattaaagtctgaagaccatcataagctgactgtcagagtctgaagt 15477741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 194 - 430
Target Start/End: Original strand, 31127354 - 31127591
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaagaaaggtcaatactcc 293  Q
    ||||| ||||| |||||  ||||| |||||  |||||||||| ||||| ||||||||||||| ||| ||||||||||  | || |||||  ||||| |      
T  31127354 ttgcaaaaggaatagaagcctggaacaacgtatatttcagaggaattataaggcattggatgcttaaccactgaagagcg-catgaaagaacaatagtat 31127452  T
Q  294 acttatacaaccaccactccactactacactat--tgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttt 391  Q
    | || |||||||||   ||||||| | ||||||  ||| ||| | ||||||||||  |||||||||| |||| |||||||||||| ||||||| ||| ||    
T  31127453 aattgtacaaccactgttccactattccactatcatgtatgcacatagtactgctctagctgtgtctatgctggttaattctccaaacaaggaatggatt 31127552  T
Q  392 tcaaattataccttcctatgacattaatcaaatcaagct 430  Q
    |||||||||  | ||||| || ||||| |||||||||||    
T  31127553 tcaaattatttcctcctaggatattaaccaaatcaagct 31127591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 365 - 486
Target Start/End: Original strand, 18026912 - 18027032
Alignment:
Q  365 gttaattctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaac 464  Q
    |||||||||| ||||||||| | ||||||||||||| |||||||| |||||||| |||||||||| |   ||||||||||| || ||||  |||| ||||    
T  18026912 gttaattctctatacaaggaatagttttcaaattattccttcctaagacattaaccaaatcaagcaatggatcattggtga-tgatcaaaattcaataac 18027010  T
Q  465 gactctttgctgtgctgacacc 486  Q
    ||||||||| |||| |||||||    
T  18027011 gactctttgatgtgttgacacc 18027032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 226 - 532
Target Start/End: Complemental strand, 15552083 - 15551782
Alignment:
Q  226 tatttcagagaaattagaaggcattggatgtttatccactgaagaa-ggtca-agaaaggtcaatactccacttatacaaccaccactccactactacac 323  Q
    |||||||||| ||||| ||| |||||||||||||||||||||| || ||||| |||||   ||||| | || || ||||||||| ||||||||    ||     
T  15552083 tatttcagaggaattaaaagacattggatgtttatccactgaaaaatggtcagagaaatcgcaatagtacaattgtacaaccactactccact----ca- 15551989  T
Q  324 tattgtctgcgcctagtact-gctacagctgtgtctctgctcgttaattctccatacaa-ggagtggttttcaaattataccttcctatgacattaatca 421  Q
       ||||||||| ||||||  ||||||  |||||||  ||| |||||||||||| | || ||| ||  ||||||||||| || || || |||| ||| ||    
T  15551988 ---tgtctgcgcatagtacaagctacatatgtgtctacgctggttaattctccaaaaaaaggaatgaatttcaaattattccctcttaggacaataacca 15551892  T
Q  422 aatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttgctgtgctgacaccattgcaacgccttttttcatacctctatttaaaag 521  Q
    ||||||||  |  |||||||||||||| |||||||||   |||||||||||| |||||||||||   | ||||| | | |||||||||||||| |||| |    
T  15551891 aatcaagcatcggatcattggtgattgatcaagcttctacaacgactctttgatgtgctgacacttctacaacgtc-tctttcatacctctatataaagg 15551793  T
Q  522 aataaagactt 532  Q
    ||| |||||||    
T  15551792 aatgaagactt 15551782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 24398795 - 24398722
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactga 267  Q
    ||||||||||  |||||  |||||||||||||||||| | || ||||||||||||||||||| |||||||||||    
T  24398795 ttgcagaaggtatagaagcctggagcaacgactattttaaaggaattagaaggcattggatgcttatccactga 24398722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 473
Target Start/End: Complemental strand, 14758246 - 14758152
Alignment:
Q  379 caaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactctttg 473  Q
    |||||| ||| ||||||||||| ||||| || |||||||| || ||||||| |||||||| || |||||| |||||||||   ||||||||||||    
T  14758246 caaggaatggatttcaaattattccttcataagacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttctacaacgactctttg 14758152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 14758643 - 14758522
Alignment:
Q  27 gcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatctgagtctgaagaattcagagtctgaagaccat-caga 125  Q
    |||||||||||  |||||||| | |||| ||| ||||||  ||||||||||||||||||  || || ||||| ||| ||||||||||||| | || ||||    
T  14758643 gcattggttctggaagaacaaattagaggaaaggaatttagaagagaagcttagtttcatgtcagaatctgatgaagtcagagtctgaagtctatccaga 14758544  T
Q  126 agttgatagttagagtctgaag 147  Q
    || | | |||||||||||||||    
T  14758543 agctaacagttagagtctgaag 14758522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 24728598 - 24728643
Alignment:
Q  225 ctatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  24728598 ctatttcagaggaattagaaggcattggatgcttatccactgaaga 24728643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 13145269 - 13145193
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| |||||  |||  |||||||||||||||||  ||||||||||||||| ||| ||||||||| ||||    
T  13145269 ttgcagaaggaatagaagcctgatgcaacgactatttcagatgaattagaaggcattgaatgcttatccactaaaga 13145193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 23231287 - 23231243
Alignment:
Q  226 tatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||||||||||||||||||||||| |||||||| |||||    
T  23231287 tatttcagagaaattagaaggcattggatgcttatccacggaaga 23231243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 32335958 - 32335882
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| | |||  ||||||||||||||||||||||  |||| ||||| ||| |||| ||||||||||||||    
T  32335958 ttgcagaaggaatggaagcctggagcaacgactatttcagaagaatttgaagggattagatgcttatccactgaaga 32335882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 23006094 - 23006144
Alignment:
Q  220 aacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||||||||| |||||||||||||| |||| ||||||| ||||||    
T  23006094 aacgactatttcagaggaattagaaggcattagatgcttatccattgaaga 23006144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 23782272 - 23782222
Alignment:
Q  220 aacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||||||||| |||||||||||||| |||| ||||||| ||||||    
T  23782272 aacgactatttcagaggaattagaaggcattagatgcttatccattgaaga 23782222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 31127140 - 31127258
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagctta-gtttcaaatctgagtctgaa 99  Q
    ||||||||||||||||||  ||||||| ||||||||| |||||||||  ||||||||  |||||| | |  |||||||| ||| ||| | ||||||||||    
T  31127140 ctaaaatttataagtcttaaaacaaggtattggttctgaaagaacaaaagagagcaattgaatttactaaggaagcttatgttgcaagtttgagtctgaa 31127239  T
Q  100 ga-attcagagtctgaaga 117  Q
    ||   ||||||||||||||    
T  31127240 gaccatcagagtctgaaga 31127258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 17445689 - 17445746
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||| | |||| |||||||    
T  17445689 ctggagcaacgactatttcagaggaattagaagacattgaatgctgatccgctgaaga 17445746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 25596021 - 25595957
Alignment:
Q  191 agtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatg 255  Q
    |||||||| ||||| |||||  |||||||||||||||||||| || |||||||| ||||| ||||    
T  25596021 agtttgcataaggaatagaagtctggagcaacgactatttcaaaggaattagaatgcatttgatg 25595957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 30451579 - 30451623
Alignment:
Q  226 tatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||| ||||||| |||||||||||||| ||||||||||||||    
T  30451579 tatttcatagaaatttgaaggcattggatgcttatccactgaaga 30451623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 370 - 458
Target Start/End: Original strand, 30451726 - 30451814
Alignment:
Q  370 ttctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttc 458  Q
    ||||| ||||| ||| ||| ||| ||||| | ||||| || |||| |||||||||||||  ||| |||||||||||||| |||||||||    
T  30451726 ttctctatacatggaatggatttgaaattgttccttcataggacaataatcaaatcaagaaacagatcattggtgattgatcaagcttc 30451814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 15552313 - 15552190
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagctta-gtttcaaatctgagtctgaa 99  Q
    ||||||||||||||||||  ||||||| || ||||||  |||||||  |  ||||||||||||||||||  |||||  | ||| ||| || |||| ||||    
T  15552313 ctaaaatttataagtcttaaaacaaggtatcggttctggaagaacatataggagcaaaagaattttcaaaggaagcaaatgttgcaagtcagagtttgaa 15552214  T
Q  100 gaattcagagtctgaagaccatca 123  Q
    ||| ||||||||| ||||| ||||    
T  15552213 gaagtcagagtcttaagacaatca 15552190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 472
Target Start/End: Original strand, 16462841 - 16462944
Alignment:
Q  370 ttctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtga-ttggtcaagcttcagtaacgact 468  Q
    ||||| ||||||||| ||| ||| ||||| | || | ||| |||| ||| |||||||||| ||| ||||||||||| ||| ||||||||||  |||||||    
T  16462841 ttctctatacaaggaatggatttgaaattgttcccttctaggacaataaccaaatcaagcaacatatcattggtgatttgatcaagcttcaacaacgact 16462940  T
Q  469 cttt 472  Q
    ||||    
T  16462941 cttt 16462944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 18172067 - 18172121
Alignment:
Q  216 gagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||||||||||||| ||||||||| ||||  ||| ||||||| ||||||    
T  18172067 gagcaacgactatttcagaggaattagaagacattaaatgcttatccattgaaga 18172121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 25930612 - 25930546
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttat 260  Q
    ||||||||||| |||||  ||||||||||| ||| ||||||| |||| |||| ||||||||| ||||    
T  25930612 ttgcagaaggaatagaagcctggagcaacggctaattcagaggaatttgaagtcattggatgcttat 25930546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 16462665 - 16462734
Alignment:
Q  197 cagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactg 266  Q
    |||||||| |||||  |||||| |||| |||  |||||| |||| |||||||||||||| ||||||||||    
T  16462665 cagaaggaatagaagcctggagaaacggctaaatcagaggaatttgaaggcattggatgcttatccactg 16462734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 17867658 - 17867625
Alignment:
Q  237 aattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||||| ||||||||||||||    
T  17867658 aattagaaggcattggatgcttatccactgaaga 17867625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 17877441 - 17877408
Alignment:
Q  237 aattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||||| ||||||||||||||    
T  17877441 aattagaaggcattggatgcttatccactgaaga 17877408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 24718797 - 24718830
Alignment:
Q  237 aattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||||| ||||||||||||||    
T  24718797 aattagaaggcattggatgcttatccactgaaga 24718830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 10402 - 10454
Alignment:
Q  216 gagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaa 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10402 gagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaa 10454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 107 - 472
Target Start/End: Original strand, 1725 - 2083
Alignment:
Q  107 gagtctgaagaccatcagaagttgatagttagagtctgaagtgaagaacctgaaagtcagttaaatt-ggttatttgaatacatgagtttgcagaaggag 205  Q
    ||||||||||| |||||||||||||  | ||||||||||||| ||||||||| | || ||||| ||| ||||||||||  | || ||| ||||||||||     
T  1725 gagtctgaagatcatcagaagttgaatgctagagtctgaagtcaagaacctgga-gttagttatatttggttatttgaggaaataagtctgcagaaggaa 1823  T
Q  206 tagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaagaaa-ggtcaatactccacttatacaac 304  Q
    || ||  ||  || || ||||||||||||| || ||||||||||| |||  ||||||||| ||||  | || |||| || || || | || || || |||    
T  1824 taaaagcctaaagaaatgactatttcagaggaaatagaaggcattagatacttatccactaaagagcg-catgaaaaggacactagtacatttgtataac 1922  T
Q  305 caccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaaattatacct 404  Q
    ||| |||||||| |       |||||| |   ||||| || ||||| |||||||  ||| |||||||||||| ||||||| ||| ||||||||||| |      
T  1923 cactactccactccc------ttgtctacatatagtattgttacagttgtgtctacgctagttaattctccaaacaaggaatggatttcaaattattcgc 2016  T
Q  405 tcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactcttt 472  Q
    ||||| |||||||| |||||||||| ||| ||||||||||| || ||||||||||  |||||||||||    
T  2017 tcctaggacattaaccaaatcaagcaacagatcattggtga-tgatcaagcttcaacaacgactcttt 2083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 172 - 446
Target Start/End: Complemental strand, 534 - 269
Alignment:
Q  172 ttggttatttgaatacatgagtttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaa 271  Q
    |||||||||| || |||| |||||| ||||||| || ||  || |||||||||| ||||||||| ||||||||||||||| ||  |||| |||| ||||     
T  534 ttggttattttaagacataagtttggagaaggaataaaagcctagagcaacgacaatttcagaggaattagaaggcattgaatacttattcactaaagag 435  T
Q  272 ggtcaagaaaggtcaatactccacttatacaaccaccactccactactacactattgtctgcgcctagtactgctacagctgtgtctctgctcgttaatt 371  Q
     |   | ||||| ||||        | ||||||||| |||||||| ||  ||| |||||||| | ||||||  ||||| ||||||||   ||  ||||||    
T  434 cgcataaaaaggacaat--------tgtacaaccactactccact-cttgactcttgtctgcacatagtacaactacaactgtgtctacactgtttaatt 344  T
Q  372 ctccatacaaggagtggttttcaaattataccttcctatgacattaatcaaatcaagctacaaatcattggtgat 446  Q
    ||||| ||||||| ||| ||||||||||| || ||||| |||||||| |||||||||| | | ||||||||||||    
T  343 ctccaaacaaggaatggatttcaaattattccctcctaggacattaaccaaatcaagcaatagatcattggtgat 269  T

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Target: scaffold0074 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 31760 - 31684
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| |||||  |||||||||||||||||| | || |||||||||| |||||||| ||||||||||||||    
T  31760 ttgcagaaggaatagaagcctggagcaacgactattttaaaggaattagaaggaattggatgcttatccactgaaga 31684  T

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Target: scaffold0622 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 472
Target Start/End: Original strand, 3381 - 3655
Alignment:
Q  198 agaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaagaaggtcaagaaaggtcaatactccactt 297  Q
    ||||||| |||||  || |||||| | ||||||||||| |||||||||||||| |||| ||||||||| |||  |  || |||| |   ||| | || ||    
T  3381 agaaggaatagaagcctagagcaatggctatttcagaggaattagaaggcattcgatgcttatccactaaagg-gaacaggaaaagaacatagtacaatt 3479  T
Q  298 atacaaccaccactccactactacacta--ttgtctgcgcctagtactgctacagctgtgtctctgctcgttaattctccatacaaggagtggttttcaa 395  Q
     ||||||||| ||||||||| | |||||  |||  ||| | |||||||||||||||||||| | |||| || | || | || ||||||| ||| ||||||    
T  3480 gtacaaccactactccactattccactaccttggttgcacatagtactgctacagctgtgtatgtgctggtgatttgtgcaaacaaggaatggatttcaa 3579  T
Q  396 attataccttcctatgacattaatcaaatcaagctacaaatcattggtgattggtcaagcttcagtaacgactcttt 472  Q
     |||| |  ||||| |||||||| |||||||||| ||| ||| ||||||| || ||||||||||  | |||||||||    
T  3580 gttattctctcctaggacattaaccaaatcaagcaacagatccttggtga-tgatcaagcttcaacagcgactcttt 3655  T

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Target: scaffold0622; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 2777 - 2736
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggat 254  Q
    |||||||||||||||||| |||| |||| |||||||||||||    
T  2777 ctggagcaacgactattttagaggaattggaaggcattggat 2736  T

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Target: scaffold0011 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 59675 - 59618
Alignment:
Q  213 ctggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    |||||||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||    
T  59675 ctggagcaacgactattttagaggaattagaaggcattggatggttatccaatgaaga 59618  T

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Target: scaffold0772 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 874 - 930
Alignment:
Q  214 tggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||| |||||||||||| | ||||||| ||||||||| ||||||||||||||    
T  874 tggagcaacaactatttcagaggatttagaagacattggatgcttatccactgaaga 930  T

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Target: scaffold0772; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 1068 - 1110
Alignment:
Q  405 tcctatgacattaatcaaatcaagctacaaatcattggtgatt 447  Q
    ||||| |||| |||||||||||||| |||||||||||||||||    
T  1068 tcctaggacaataatcaaatcaagcaacaaatcattggtgatt 1110  T

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Target: scaffold0311 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 20204 - 20128
Alignment:
Q  194 ttgcagaaggagtagaatactggagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||| | |||  || |||||||||||||||||||  |||||||| |||||||||| ||||||| ||||||    
T  20204 ttgcagaaggaatggaagcctagagcaacgactatttcagaagaattagaaagcattggatgcttatccattgaaga 20128  T

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Target: scaffold0031 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 105208 - 105121
Alignment:
Q  1 ctaaaatttataagtctttgaacaaggcattggttctaaaagaacaattgagagcaaaagaattttcaagagaagcttagtttcaaatc 89  Q
    |||||||||||| |||||  | ||| | ||||||| | | | ||||| ||||||||||||||||| |||||||||||||||| ||||||    
T  105208 ctaaaatttatatgtcttaaagcaaagtattggttttgatataacaaatgagagcaaaagaattt-caagagaagcttagttgcaaatc 105121  T

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Target: scaffold0522 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 4266 - 4317
Alignment:
Q  219 caacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||  |||||||| |||||||||| ||||||| ||||||    
T  4266 caacgactatttcagaagaattagaaagcattggatgcttatccattgaaga 4317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 11549 - 11600
Alignment:
Q  219 caacgactatttcagagaaattagaaggcattggatgtttatccactgaaga 270  Q
    ||||||||||||||||  |||||||| |||||||||| ||||||| ||||||    
T  11549 caacgactatttcagaagaattagaaagcattggatgcttatccattgaaga 11600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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