View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17972_high_11 (Length: 462)

Name: NF17972_high_11
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17972_high_11
NF17972_high_11
[»] chr2 (3 HSPs)
chr2 (291-447)||(26661490-26661646)
chr2 (14-192)||(26661745-26661923)
chr2 (299-429)||(6049912-6050043)
[»] chr6 (3 HSPs)
chr6 (291-447)||(21481408-21481564)
chr6 (16-191)||(21481663-21481840)
chr6 (291-427)||(19701161-19701298)
[»] chr7 (2 HSPs)
chr7 (305-428)||(13331531-13331654)
chr7 (305-428)||(13342446-13342569)
[»] chr5 (1 HSPs)
chr5 (305-428)||(5672002-5672125)
[»] scaffold0586 (1 HSPs)
scaffold0586 (291-427)||(9594-9731)
[»] chr8 (2 HSPs)
chr8 (291-435)||(32717808-32717953)
chr8 (291-435)||(10637641-10637786)
[»] chr1 (2 HSPs)
chr1 (291-435)||(22893796-22893941)
chr1 (299-429)||(44306129-44306259)
[»] chr4 (1 HSPs)
chr4 (299-412)||(13893697-13893810)
[»] chr3 (1 HSPs)
chr3 (305-423)||(15761973-15762091)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 9e-74; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 291 - 447
Target Start/End: Complemental strand, 26661646 - 26661490
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||    
T  26661646 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa 26661547  T
Q  391 ttgacaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatc 447  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661546 ttggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatc 26661490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 26661923 - 26661745
Alignment:
Q  14 aggcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattaacatattttgggaaaagttagaagaaggtggg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||     
T  26661923 aggcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgttatggttattagcatattttggaaaaagttagaagaaggtggt 26661824  T
Q  114 ttaataaaaacaagttgtctctaaccnnnnnnngcattgattcatgattgggaaaaaacaagaattgccaaacagtggg 192  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  26661823 ttaataaaaacaagttgtctctaaccttttttttcattgattcatgattgggaaaaaacaagaattgccaaacagtggg 26661745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 299 - 429
Target Start/End: Complemental strand, 6050043 - 6049912
Alignment:
Q  299 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaag 398  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||||||||||||  |||||||||||||| | |||| || |  ||||    
T  6050043 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 6049944  T
Q  399 cagttgatgcaca-cacaaagatcatgggttt 429  Q
    ||||||||| ||| ||||||||| ||||||||    
T  6049943 cagttgatgaacaccacaaagatgatgggttt 6049912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 291 - 447
Target Start/End: Complemental strand, 21481564 - 21481408
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||| ||    
T  21481564 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaa 21481465  T
Q  391 ttgacaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatc 447  Q
    ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481464 ttggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatc 21481408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 21481840 - 21481663
Alignment:
Q  16 gcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattaacatattttgggaaaagttagaagaaggtgggtt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21481840 gcttattggttattactagcacatgctgaagttttacgaacaaagaattcagcgtcatggttattagcatattttgggaaaagttagaagaaggtgggtt 21481741  T
Q  116 aataaaaacaagttgtctct-aaccnnnnnnngcattgattcatgattggg-aaaaaacaagaattgccaaacagtgg 191  Q
    |||||||||||||||||||| |||        ||||||||||||||||||| ||||||||||||||||||||||||||    
T  21481740 aataaaaacaagttgtctctaaacttttttttgcattgattcatgattgggaaaaaaacaagaattgccaaacagtgg 21481663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 291 - 427
Target Start/End: Complemental strand, 19701298 - 19701161
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||| ||||||||| |||||  ||    
T  19701298 cagagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaa 19701199  T
Q  391 ttgacaagcagttgatgcacac-acaaagatcatgggt 427  Q
     |  ||||||||||||| |||| |||||||||||||||    
T  19701198 atagcaagcagttgatgaacactacaaagatcatgggt 19701161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 305 - 428
Target Start/End: Original strand, 13331531 - 13331654
Alignment:
Q  305 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaagcagttg 404  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||  ||||||||||||||||||||  |||   ||||||||||    
T  13331531 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13331630  T
Q  405 atgcacacacaaagatcatgggtt 428  Q
    ||| ||||||||||||||||||||    
T  13331631 atgaacacacaaagatcatgggtt 13331654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 305 - 428
Target Start/End: Original strand, 13342446 - 13342569
Alignment:
Q  305 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaagcagttg 404  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||  ||||||||||||||||||||  |||   ||||||||||    
T  13342446 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13342545  T
Q  405 atgcacacacaaagatcatgggtt 428  Q
    ||| ||||||||||||||||||||    
T  13342546 atgaacacacaaagatcatgggtt 13342569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 305 - 428
Target Start/End: Original strand, 5672002 - 5672125
Alignment:
Q  305 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaagcagttg 404  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||  ||||||||||||||||||||  |||   ||||||||||    
T  5672002 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 5672101  T
Q  405 atgcacacacaaagatcatgggtt 428  Q
    ||| ||||||||||||||||||||    
T  5672102 atgaacacacaaagatcatgggtt 5672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 291 - 427
Target Start/End: Complemental strand, 9731 - 9594
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||| |||||  ||    
T  9731 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 9632  T
Q  391 ttgacaagcagttgatgcacac-acaaagatcatgggt 427  Q
       |||||||||||||| |||| |||||||||||||||    
T  9631 acaacaagcagttgatgaacactacaaagatcatgggt 9594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 291 - 435
Target Start/End: Original strand, 32717808 - 32717953
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||| |||||  ||    
T  32717808 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa 32717907  T
Q  391 ttgacaagcagttgatgcacac-acaaagatcatgggtttcttttt 435  Q
        ||||||||||||| |||| |||||||| ||||||||||||||    
T  32717908 acagcaagcagttgatgaacactacaaagataatgggtttcttttt 32717953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 10637786 - 10637641
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||  |||||||||||||| |||||  ||    
T  10637786 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaa 10637687  T
Q  391 ttgacaagcagttgatgcacac-acaaagatcatgggtttcttttt 435  Q
        ||||||||||||| |||| |||||||| ||||||||||||||    
T  10637686 acagcaagcagttgatgaacactacaaagataatgggtttcttttt 10637641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 22893941 - 22893796
Alignment:
Q  291 cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaa 390  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||  |||||||||||||| |||||  ||    
T  22893941 cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaa 22893842  T
Q  391 ttgacaagcagttgatgcacac-acaaagatcatgggtttcttttt 435  Q
        ||||||||||||| |||| |||||||||||||||||| ||||    
T  22893841 acagcaagcagttgatgaacactacaaagatcatgggtttcctttt 22893796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 429
Target Start/End: Complemental strand, 44306259 - 44306129
Alignment:
Q  299 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaag 398  Q
    |||||||||| ||||||||||||||||||||||||||||||   | | |||| |||||||||||||  |||||||||||||| | |||| || |  ||||    
T  44306259 tgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 44306161  T
Q  399 cagttgatgcaca-cacaaagatcatgggttt 429  Q
    ||||||||| ||| ||||||||| ||||||||    
T  44306160 cagttgatgaacaccacaaagatgatgggttt 44306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 299 - 412
Target Start/End: Original strand, 13893697 - 13893810
Alignment:
Q  299 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaag 398  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||||||||||||  |||||||||||||| | |||| || | |||||    
T  13893697 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaag 13893796  T
Q  399 cagttgatgcacac 412  Q
    ||||||||| ||||    
T  13893797 cagttgatgaacac 13893810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 305 - 423
Target Start/End: Original strand, 15761973 - 15762091
Alignment:
Q  305 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatggtaccttgagcagaagagtgaaatcaaaaacctaattgacaagcagttg 404  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||  |||| ||||||||||||| || ||||  |||  |||||    
T  15761973 caatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttg 15762072  T
Q  405 atgcacacacaaagatcat 423  Q
    ||| ||| |||||||||||    
T  15762073 atgaacatacaaagatcat 15762091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University