View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_high_13 (Length: 433)
Name: NF17972_high_13
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 1586746 - 1586332
Alignment:
| Q |
1 |
tgttaaggattacaaaactggaagagaggagatggagttcacgtgaggttgattgtgaaaggtagtggtcactgaccacactagtttagccttggttgcc |
100 |
Q |
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| T |
1586746 |
tgttaaggattacaaaactggaagagaggagatggagttcacgtgaggttgattgtgaaaggtagtggtcactgaccacactagtttagccttggttgcc |
1586647 |
T |
|
| Q |
101 |
atgtgcttcttgtagaatctaaactttgtgaaaacgaaaacctcagccattaggctcacagaattggattttctttttggctttggccccatcaataatt |
200 |
Q |
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| T |
1586646 |
atgtgcttcttgtagaatctaaactttgtgaaaacgaaaacctcagccattagcctcacagaattggattttctttttggctttggccccatcaataatt |
1586547 |
T |
|
| Q |
201 |
tcgtgaaagattgttcctttgatttgaaagaaataaaataaaacaataactaagttttttattttatcctgttgttctgtctgtgtgtccatataaagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1586546 |
tcgtgaaagattgttcctttgatttgaaagaaataaaataaaacaataactaagttttttattttatcctgttgttctgtctgtgtgtccatataaagat |
1586447 |
T |
|
| Q |
301 |
gaaatttgtctatatttcactacactttgaaaatgtatttatttagaaccacgttttttagtcaaaacatattttcttttataaaacaggttgattcaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1586446 |
gaaatttgtctatatttcactacactttgaaaatgtatttatttagaaccacgttttttagtcaaaacatattttcttttataaaacaggttgattcagt |
1586347 |
T |
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| Q |
401 |
aactcggggaggaat |
415 |
Q |
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| T |
1586346 |
aactcggggaggaat |
1586332 |
T |
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