View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_high_26 (Length: 380)
Name: NF17972_high_26
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 373
Target Start/End: Original strand, 40841728 - 40842086
Alignment:
| Q |
15 |
caagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttgccactgatattattatttcttctttaagcttcttatcatatac |
114 |
Q |
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| T |
40841728 |
caagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttgccactgatattattatttcttctttaagcttcttatcatatac |
40841827 |
T |
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| Q |
115 |
aaaccaattggactgaactcttcaaattgcttgttgaacaattttagcttttctttcaatatatcttctgcaacatcaccattgagtactgcacagtcat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
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| T |
40841828 |
aaaccaattggactgaactcttcaaattgcttgttgaacaattttagcttttctttcaatatatcttctgcaacatcaccattcagtgccgcacagtcat |
40841927 |
T |
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| Q |
215 |
tgtcgtccaacttcaaaaattccaacactttattccatgcatacctttgataaagatcaaggtcttgttggaatttcgcttgatttctttggaaccaatc |
314 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841928 |
tgttgtccaacttcaaaaattccaacactttattccatgaatacctttgataaagatcaaggtcttgttggaatttcgcttgatttctttggaaccaatc |
40842027 |
T |
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| Q |
315 |
attaccaaatatggtttccaagtccaagcttttaatcatagcttctatgtgcctcctat |
373 |
Q |
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| T |
40842028 |
attaccaaatatggtttccaagtccaagcttttaatcatagcttctatgtgcctcctat |
40842086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 373
Target Start/End: Original strand, 31474158 - 31474526
Alignment:
| Q |
15 |
caagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttgccactgatattattatttcttctttaagcttcttatcatatac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31474158 |
caagacaatcacggaacctcccaataaagattccatatactggcagcaaggtatttcccactgatattattatttcttccttaagcttcttatcatatac |
31474257 |
T |
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| Q |
115 |
aaaccaattggactgaa----------ctcttcaaattgcttgttgaacaattttagcttttctttcaatatatcttctgcaacatcaccattgagtact |
204 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
31474258 |
aaaccaattggactgaactctgtacatctcttcaaattgcttgttgaacaattttagcttttctttcaatatatcttctgcaacatcgtcattgagtgcc |
31474357 |
T |
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| Q |
205 |
gcacagtcattgtcgtccaacttcaaaaattccaacactttattccatgcatacctttgataaagatcaaggtcttgttggaatttcgcttgatttcttt |
304 |
Q |
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||| ||||||||| ||||||||||||||| || |||| | |||| | | || ||||||||||||||||||||||||||| ||||||||| | | |
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| T |
31474358 |
gcatagtcattgttgtccaacttcaaaaactcagacaccatgatccaggatttttttatataaagatcaaggtcttgttggaattttgcttgatttttct |
31474457 |
T |
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| Q |
305 |
ggaaccaatcattaccaaatatggtttccaagtccaagcttttaatcatagcttctatgtgcctcctat |
373 |
Q |
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|||||||||| || ||||||| ||||||||| ||| | ||||||| | | |||||||||||||||||| |
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| T |
31474458 |
ggaaccaatcgttgccaaatacggtttccaaatcccaccttttaagtaaatcttctatgtgcctcctat |
31474526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 31405549 - 31405625
Alignment:
| Q |
259 |
ctttgataaagatcaaggtcttgttggaatttcgcttgatttctttggaaccaatcattaccaaatatggtttccaa |
335 |
Q |
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|||| |||||||||||||| |||||||| ||| |||| || |||||||||||||||||||||| ||||||||||| |
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| T |
31405549 |
cttttataaagatcaaggttttgttggatttttgctttgttattttggaaccaatcattaccaaaaatggtttccaa |
31405625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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