View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17972_high_28 (Length: 368)
Name: NF17972_high_28
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 26733729 - 26733384
Alignment:
| Q |
10 |
agtgagatgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctttcctttcattgannnnnnnagctttagcaacgcatcaag |
109 |
Q |
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| T |
26733729 |
agtgagctgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctctcctttcattgatttttttagctttagcaacgcatcaag |
26733630 |
T |
|
| Q |
110 |
atcattatttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctcagttttgtaccta |
209 |
Q |
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| T |
26733629 |
atcattatttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgtttttcatctttctcttttgctcagttttgtaccta |
26733530 |
T |
|
| Q |
210 |
tgaattggtttgcaatgtttgcattgggtgtatttaatttctctttttggtaccaca-----ctcacactacatgcagtgattgcattctgtatttataa |
304 |
Q |
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| T |
26733529 |
tgaattggtttgcaatgtttgcattgggtgtatttaatttctctttttggtaccacaccactctcacactacatgcagtgattgcattctgtatttataa |
26733430 |
T |
|
| Q |
305 |
taagtacaattatagttaatttaattgatgttatcttattggttaa |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26733429 |
taagtacaattatagttaatttaattgatgttatcttattggttaa |
26733384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 26725408 - 26725081
Alignment:
| Q |
17 |
tgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctttcctttcattgannnnnnnagctttagcaacgcatcaagatcatta |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
26725408 |
tgaagcagaagttgaaaatttccagtctttgagtgcatcatctttggctttctctcctttcattgatttttttagctttagcaacgcatcaagatcatta |
26725309 |
T |
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| Q |
117 |
tttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctcagttttgtacctatgaattg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26725308 |
tttaatgaataacacgttgtaaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctaagttttgtacctatgaattg |
26725209 |
T |
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| Q |
217 |
gtttgcaatgtttgcattgggtgtatttaatttctctttttggtaccacactcacactacatgcagtgattgcattctgtatttataataagtacaatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26725208 |
gtttgcaatgtttgcattgggtgtatttaatttctctttttggtaccacactcacactacatgcagtgattgcattctatatttataataagtacaatta |
26725109 |
T |
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| Q |
317 |
tagttaatttaattgatgttatcttatt |
344 |
Q |
| |
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||||||||||||||||| |||||||||| |
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| T |
26725108 |
tagttaatttaattgatattatcttatt |
26725081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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