View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17972_high_29 (Length: 359)

Name: NF17972_high_29
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17972_high_29
NF17972_high_29
[»] chr4 (5 HSPs)
chr4 (25-359)||(54641401-54641739)
chr4 (25-240)||(54641741-54641955)
chr4 (29-240)||(54938227-54938440)
chr4 (245-359)||(54641280-54641399)
chr4 (239-359)||(54938097-54938221)
[»] chr7 (2 HSPs)
chr7 (25-240)||(13078070-13078286)
chr7 (239-350)||(13078297-13078413)
[»] chr3 (2 HSPs)
chr3 (25-240)||(39984198-39984414)
chr3 (239-350)||(39984071-39984187)
[»] chr2 (6 HSPs)
chr2 (25-240)||(14685096-14685312)
chr2 (25-240)||(21306952-21307168)
chr2 (25-240)||(40421920-40422136)
chr2 (239-350)||(14685323-14685439)
chr2 (239-350)||(40422147-40422263)
chr2 (252-350)||(21307179-21307282)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 54641401 - 54641739
Alignment:
Q  25 tacaggatgattgatgtcgtggtgcccatagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatccgttt-gc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  54641401 tacaggatgattgatgtcgtggtgcccatagtagttccccttatctctgaccccattctcatttctttattgcaaagaagtttgcacaaatccgttttgc 54641500  T
Q  124 tctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctctattttccccatttctacatcttcccagcctttctcttctcc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  54641501 tctcttgttccatttccacaatcatgacatgcatatgggcattttctacat--ctctctattttccccatttctacatcttcccagcctttctcttctcc 54641598  T
Q  224 tatcgcggtgggatttgaagtataacaaaagtgtccaccagggtcccata-----aagtataatgatagagcgatgtgtgaatcatgcaaacttatgcct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||||||||||||||||||||||||    
T  54641599 tatcgcggtgggatttgaagtataacaaaagtgtccaccagggtcccataacttgaagtataatgatagagcgatatgtgaatcatgcaaacttatgcct 54641698  T
Q  319 tgatcatatactctgtttgtagtgatatttttgataaaaaa 359  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  54641699 tgatcatatactctgtttgtagtgatatttttgataaaaaa 54641739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 54641741 - 54641955
Alignment:
Q  25 tacaggatgattgatgtcgtggtgcccatagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatccg-tttgc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  54641741 tacaggatgattgatgtcgtggtgcccatagtagttccccttatctctgaccccatactcatttctctattgcaaagaagtttgcacaaatccgttttgc 54641840  T
Q  124 tctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctctattttccccatttctacatcttcccagcctttctcttctcc 223  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  54641841 tctcctgttccatttccacaatcatgacatgcatacgggcattttctaca--tctctctattttccccatttgtacatcttcccagcctttctcttctcc 54641938  T
Q  224 tatcgcggtgggatttg 240  Q
    |||||||||||||||||    
T  54641939 tatcgcggtgggatttg 54641955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 54938227 - 54938440
Alignment:
Q  29 ggatgattgatgtcgtggtgcccatagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatccg-tttgctctc 127  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  54938227 ggatgattgatgttgtggtgcccatagtagtcccccttatctctgaccccatactcatttctttattgcaattaagtttgcacaaatccgttttgctctc 54938326  T
Q  128 ttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctctattttccccatttctacat-cttcccagcctttctcttctcctat 226  Q
     ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| | |||||||||||||||||    
T  54938327 ctgttccatttccataatcatgacatgcatatgggcattttctacatatctctctattttccccatttcttcatccttccaaacctttctcttctcctat 54938426  T
Q  227 cgcggtgggatttg 240  Q
    ||||||||||||||    
T  54938427 cgcggtgggatttg 54938440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 245 - 359
Target Start/End: Original strand, 54641280 - 54641399
Alignment:
Q  245 ataacaaaagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctgtttgta 339  Q
    |||||| |||||||||||||||||||||||     |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641280 ataacagaagtgtccaccagggtcccataacttgaagtataatgacagggtgatgtgtgaatcatgcaaacttatgccttgatcatatactctgtttgta 54641379  T
Q  340 gtgatatttttgataaaaaa 359  Q
    ||||||||||||||||||||    
T  54641380 gtgatatttttgataaaaaa 54641399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 239 - 359
Target Start/End: Original strand, 54938097 - 54938221
Alignment:
Q  239 tgaagtataacaaaagtgtccaccagggtcccataa----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctgt 334  Q
    ||||| ||| || ||||||||||| |||||||||||    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54938097 tgaaggatatcataagtgtccacctgggtcccataactgaagtataatgacagagcgatgtgtgaatcatgcaaacttatgccctgatcatatactctgt 54938196  T
Q  335 ttgtagtgatatttttgataaaaaa 359  Q
    |||||||||||||||||| ||||||    
T  54938197 ttgtagtgatatttttgagaaaaaa 54938221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 13078286 - 13078070
Alignment:
Q  25 tacaggatgattgatgtcgtggtgcccatagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatccgttt-gc 123  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  13078286 tacaggatgattgatgtcgtggtgcccacagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatctgttttgc 13078187  T
Q  124 tctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctctattttccccatttctacatcttcccagcctttctcttctcc 223  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13078186 tctcctgtcccatttccacaatcatgacatgcatatggacattttctacatctctctctattttccccatttctacatcttcccaacctttctcttctcc 13078087  T
Q  224 tatcgcggtgggatttg 240  Q
    |||||||||||||||||    
T  13078086 tatcgcggtgggatttg 13078070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 350
Target Start/End: Complemental strand, 13078413 - 13078297
Alignment:
Q  239 tgaagtataacaaaagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctg 333  Q
    ||||| ||| || ||||||||||| |||||||||||     |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||    
T  13078413 tgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaacttatgccttgatcatataccctg 13078314  T
Q  334 tttgtagtgatattttt 350  Q
    ||||| |||||||||||    
T  13078313 tttgtggtgatattttt 13078297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 39984198 - 39984414
Alignment:
Q  25 tacaggatgattgatgtcgtggtgcccatagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatccgttt-gc 123  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  39984198 tacaggatgattgatgtcgtggtgcccacagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatctgttttgc 39984297  T
Q  124 tctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctctattttccccatttctacatcttcccagcctttctcttctcc 223  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39984298 tctcctgtcccatttccacaatcatgacatgcatatggacattttctacatctctctctattttccccatttctacatcttcccaacctttctcttctcc 39984397  T
Q  224 tatcgcggtgggatttg 240  Q
    |||||||||||||||||    
T  39984398 tatcgcggtgggatttg 39984414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 350
Target Start/End: Original strand, 39984071 - 39984187
Alignment:
Q  239 tgaagtataacaaaagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctg 333  Q
    ||||| ||| || ||||||||||| |||||||||||     |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||    
T  39984071 tgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaacttatgccttgatcatataccctg 39984170  T
Q  334 tttgtagtgatattttt 350  Q
    ||||| |||||||||||    
T  39984171 tttgtggtgatattttt 39984187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 14685312 - 14685096
Alignment:
Q  25 tacaggatgattgatgtcgtggtgcccatagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatccgttt-gc 123  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  14685312 tacaggatgattgatgtcgtggtgcccacagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatctgttttgc 14685213  T
Q  124 tctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctctattttccccatttctacatcttcccagcctttctcttctcc 223  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14685212 tctcctgtcccatttccacaatcatgacatgcatatggacattttctacatctctctctattttccccatttctacatcttcccaacctttctcttctcc 14685113  T
Q  224 tatcgcggtgggatttg 240  Q
    |||||||||||||||||    
T  14685112 tatcgcggtgggatttg 14685096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 21307168 - 21306952
Alignment:
Q  25 tacaggatgattgatgtcgtggtgcccatagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatccgttt-gc 123  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  21307168 tacaggatgattgatgtcgtggtgcccacagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatctgttttgc 21307069  T
Q  124 tctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctctattttccccatttctacatcttcccagcctttctcttctcc 223  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21307068 tctcctgtcccatttccacaatcatgacatgcatatggacattttctacatctctctctattttccccatttctacatcttcccaacctttctcttctcc 21306969  T
Q  224 tatcgcggtgggatttg 240  Q
    |||||||||||||||||    
T  21306968 tatcgcggtgggatttg 21306952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 40422136 - 40421920
Alignment:
Q  25 tacaggatgattgatgtcgtggtgcccatagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatccgttt-gc 123  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  40422136 tacaggatgattgatgtcgtggtgcccacagtagttccccttatctctgaccccatactcatttctttattgcaaagaagtttgcacaaatctgttttgc 40422037  T
Q  124 tctcttgttccatttccacaatcatgacatgcatatgggcattttctacatttctctctattttccccatttctacatcttcccagcctttctcttctcc 223  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40422036 tctcctgtcccatttccacaatcatgacatgcatatggacattttctacatctctctctattttccccatttctacatcttcccaacctttctcttctcc 40421937  T
Q  224 tatcgcggtgggatttg 240  Q
    |||||||||||||||||    
T  40421936 tatcgcggtgggatttg 40421920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 350
Target Start/End: Complemental strand, 14685439 - 14685323
Alignment:
Q  239 tgaagtataacaaaagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctg 333  Q
    ||||| ||| || ||||||||||| |||||||||||     |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||    
T  14685439 tgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaacttatgccttgatcatataccctg 14685340  T
Q  334 tttgtagtgatattttt 350  Q
    ||||| |||||||||||    
T  14685339 tttgtggtgatattttt 14685323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 350
Target Start/End: Complemental strand, 40422263 - 40422147
Alignment:
Q  239 tgaagtataacaaaagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctg 333  Q
    ||||| ||| || ||||||||||| |||||||||||     |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||    
T  40422263 tgaaggatatcataagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaacttatgccttgatcatataccctg 40422164  T
Q  334 tttgtagtgatattttt 350  Q
    ||||| |||||||||||    
T  40422163 tttgtggtgatattttt 40422147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 21307282 - 21307179
Alignment:
Q  252 aagtgtccaccagggtcccataa-----agtataatgatagagcgatgtgtgaatcatgcaaacttatgccttgatcatatactctgtttgtagtgatat 346  Q
    ||||||||||| |||||||||||     |||||||||| |||||  ||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  21307282 aagtgtccacctgggtcccataacttgaagtataatgacagagcactgtgtgaatcatgcaaacttatgccttgatcatataccctgtttgtggtgatat 21307183  T
Q  347 tttt 350  Q
    ||||    
T  21307182 tttt 21307179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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