View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17972_high_3 (Length: 650)
Name: NF17972_high_3
Description: NF17972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17972_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 371 - 635
Target Start/End: Original strand, 2504653 - 2504917
Alignment:
| Q |
371 |
ctcataactaattaatattaatattccttacatttcagtcccttaactaatgcttctgtcaaccaacttggtcctagtatagtatttgctatatcaatat |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2504653 |
ctcataactaattaatattaatattccttacatttcagtcccttaactaatgcttctgtcaaccaacttggtcctagtatagtatttgctatatcaatat |
2504752 |
T |
|
| Q |
471 |
tttctacttcactagggtttaaactgtaaccttttaacttcttcaacttcttctttaacacttgattcgaaccatttgagttatcctatccgtgctagtc |
570 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2504753 |
tttctacttcactagggtttaaactctaaccttttaacttcttcaacttcttctttaacacttgattcgaaccatttgagttatcctatccttgctagtc |
2504852 |
T |
|
| Q |
571 |
ttctacttttgattcttatatatcgtcttttcatatattgcatacatttgatgaaacattctctg |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2504853 |
ttctacttttgattcttatatatcgtcttttcatatattgcatacatttgatgaaccattctctg |
2504917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 2504306 - 2504587
Alignment:
| Q |
18 |
acctacgcggaacagtaatgatagagtctaggggaaacaattatggtggaaaagtgggcattagattattgttttactataataatcagatagagacaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
2504306 |
acctacgcggaacagtaatgatagagtctaggg-aaacaattatggtggaaaagtgggcattagatcattggtttactataataatcagatagagacaag |
2504404 |
T |
|
| Q |
118 |
ccatgctgattagtggttactaatccatcacaaataaggaggaagaggtagtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2504405 |
ccatgctgattagtggttactaatccatcacaaataaggaggaagaggtagtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttg |
2504504 |
T |
|
| Q |
218 |
ctagatttggaaactgtcttttttaataatgactagtgttgatcatgtactattattgtactgtataaggcactttgatcttgtac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
2504505 |
ctagatttggaaactgtcttttttaataatgactagtgttgatcctgtac---tattgtactgcataaggcactttgatcttgtac |
2504587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University